Wall clock time and date at job start Tue Mar 31 2020 20:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.46856 * 89.99940 * 6 5 4 8 8 O 1.21274 * 120.00346 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99649 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00177 * 359.97438 * 9 7 6 11 11 C 1.46501 * 119.99947 * 180.02562 * 9 7 6 12 12 C 1.53001 * 109.47107 * 89.99639 * 11 9 7 13 13 C 1.53005 * 109.47345 * 179.97438 * 12 11 9 14 14 N 1.46900 * 109.47293 * 179.97438 * 13 12 11 15 15 C 1.46904 * 110.99869 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46878 * 180.02562 * 15 14 13 17 17 O 1.21289 * 120.00391 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99614 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99769 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00082 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00228 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99522 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00383 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47030 * 59.99917 * 23 21 19 25 25 H 1.48503 * 109.47263 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47188 * 300.00062 * 23 21 19 27 27 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 28 28 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 29 29 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 30 30 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 31 31 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 32 32 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 34 34 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 35 35 H 1.09004 * 109.47297 * 90.00354 * 10 9 7 36 36 H 1.09005 * 109.47276 * 209.99824 * 10 9 7 37 37 H 1.09001 * 109.47304 * 330.00461 * 10 9 7 38 38 H 1.08995 * 109.47287 * 209.99769 * 11 9 7 39 39 H 1.09003 * 109.47372 * 330.00403 * 11 9 7 40 40 H 1.08999 * 109.47603 * 300.00376 * 12 11 9 41 41 H 1.09002 * 109.47097 * 60.00361 * 12 11 9 42 42 H 1.08999 * 109.47271 * 300.00817 * 13 12 11 43 43 H 1.09002 * 109.46534 * 60.00254 * 13 12 11 44 44 H 1.00900 * 110.99871 * 56.05266 * 14 13 12 45 45 H 1.09007 * 109.46607 * 299.99997 * 15 14 13 46 46 H 1.08999 * 109.47396 * 59.99553 * 15 14 13 47 47 H 0.96995 * 120.00311 * 0.02562 * 18 16 15 48 48 H 0.97003 * 119.99698 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 6 5.1607 -1.9432 1.4396 8 8 4.5351 -1.4567 2.3576 9 7 6.2055 -2.7561 1.6923 10 6 6.9616 -3.3435 0.5835 11 6 6.5845 -3.0534 3.0759 12 6 5.8309 -4.2955 3.5555 13 6 6.2272 -4.6064 5.0003 14 7 5.5032 -5.7987 5.4609 15 6 5.8591 -6.1275 6.8478 16 6 5.0990 -7.3534 7.2841 17 8 4.3356 -7.8992 6.5157 18 7 5.2676 -7.8434 8.5284 19 6 4.5758 -8.9583 8.9256 20 1 3.8960 -9.4443 8.2413 21 6 4.7491 -9.4631 10.2085 22 7 5.5766 -8.8721 11.0408 23 14 3.8070 -10.9827 10.7494 24 1 4.1569 -12.1230 9.8649 25 1 4.1672 -11.3155 12.1512 26 1 2.3483 -10.7180 10.6621 27 8 2.2923 -1.0895 0.0044 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9666 2.1203 -0.0045 32 1 4.5212 1.2433 0.0076 33 1 4.5127 -2.5646 -0.4964 34 1 5.6061 -1.1601 -0.4949 35 1 7.7801 -2.6780 0.3090 36 1 7.3652 -4.3086 0.8898 37 1 6.3021 -3.4808 -0.2735 38 1 7.6577 -3.2371 3.1272 39 1 6.3301 -2.2059 3.7124 40 1 4.7578 -4.1119 3.5042 41 1 6.0853 -5.1431 2.9190 42 1 7.3004 -4.7902 5.0512 43 1 5.9732 -3.7589 5.6369 44 1 5.6712 -6.5828 4.8486 45 1 6.9297 -6.3223 6.9117 46 1 5.6027 -5.2903 7.4970 47 1 5.8778 -7.4067 9.1430 48 1 5.6979 -9.2247 11.9363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754375119.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:28 Heat of formation + Delta-G solvation = -86.386232 kcal Electronic energy + Delta-G solvation = -27642.327735 eV Core-core repulsion = 23504.816534 eV Total energy + Delta-G solvation = -4137.511201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.56343 -40.92797 -40.17902 -37.68859 -36.51707 -35.86912 -34.25278 -34.05254 -33.33042 -32.79363 -30.82125 -28.82471 -27.57604 -26.77650 -25.79247 -24.41683 -22.79019 -22.56563 -21.29140 -21.07280 -20.22085 -19.91775 -18.32691 -17.95907 -17.73238 -17.19292 -17.02975 -16.73745 -16.57092 -16.48195 -15.96393 -15.64526 -15.30580 -15.16054 -14.88943 -14.59950 -14.36885 -14.15190 -13.95236 -13.76170 -13.74213 -13.57785 -13.54864 -13.38183 -13.20859 -13.10203 -12.94689 -12.81098 -12.73602 -12.49657 -12.45096 -12.43299 -12.12812 -11.69799 -11.52205 -11.02857 -10.79974 -10.38928 -10.03948 -9.69997 -9.34034 -9.22099 -8.48103 -5.97359 0.68689 1.38893 1.40724 1.51987 1.54320 1.60812 1.90192 2.02459 2.17599 2.28615 2.92561 3.18741 3.48966 3.52101 3.68714 3.96348 3.98306 4.11264 4.12262 4.20776 4.24650 4.32045 4.37692 4.43385 4.45164 4.51410 4.56221 4.56499 4.61946 4.68301 4.71950 4.81855 4.84580 4.89461 5.01161 5.04826 5.14091 5.19240 5.28224 5.38947 5.54466 5.63883 5.87398 6.09084 6.20830 6.33703 6.39993 6.58158 7.10304 7.12093 7.53503 8.08988 8.69001 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.001620 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.834365 B =17284.763103 C =18423.500054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.030 4.030 3 C -0.226 4.226 4 C -0.204 4.204 5 C -0.021 4.021 6 C -0.051 4.051 7 C 0.504 3.496 8 O -0.582 6.582 9 N -0.613 5.613 10 C 0.064 3.936 11 C 0.121 3.879 12 C -0.120 4.120 13 C 0.066 3.934 14 N -0.691 5.691 15 C 0.066 3.934 16 C 0.435 3.565 17 O -0.625 6.625 18 N -0.572 5.572 19 C -0.338 4.338 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.995 3.005 24 H -0.270 1.270 25 H -0.269 1.269 26 H -0.273 1.273 27 O -0.197 6.197 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.167 0.833 32 H 0.163 0.837 33 H 0.132 0.868 34 H 0.161 0.839 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.345 0.655 45 H 0.072 0.928 46 H 0.100 0.900 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.029 19.698 -26.284 33.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C -0.245 4.245 4 C -0.224 4.224 5 C -0.070 4.070 6 C -0.090 4.090 7 C 0.293 3.707 8 O -0.462 6.462 9 N -0.345 5.345 10 C -0.077 4.077 11 C -0.002 4.002 12 C -0.159 4.159 13 C -0.063 4.063 14 N -0.324 5.324 15 C -0.066 4.066 16 C 0.223 3.777 17 O -0.512 6.512 18 N -0.209 5.209 19 C -0.467 4.467 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.818 3.182 24 H -0.196 1.196 25 H -0.193 1.193 26 H -0.199 1.199 27 O -0.095 6.095 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.184 0.816 32 H 0.180 0.820 33 H 0.150 0.850 34 H 0.179 0.821 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.130 0.870 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.164 0.836 45 H 0.090 0.910 46 H 0.118 0.882 47 H 0.231 0.769 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.627 19.595 -25.937 32.709 hybrid contribution 0.596 -0.762 0.948 1.355 sum 4.222 18.833 -24.989 31.575 Atomic orbital electron populations 1.20472 0.82995 1.04797 1.04743 1.23170 0.95516 0.83933 1.05322 1.21893 0.92733 1.00300 1.09598 1.21836 0.99094 0.93882 1.07541 1.22051 0.82986 0.94870 1.07139 1.20293 0.93726 1.00920 0.94095 1.21035 0.79711 0.78208 0.91730 1.90745 1.53663 1.53445 1.48349 1.47954 1.31139 1.47143 1.08248 1.22220 0.97082 0.99860 0.88538 1.21404 1.00243 0.96618 0.81981 1.21765 1.00006 0.98633 0.95523 1.21907 0.96208 0.92416 0.95743 1.60008 1.61820 1.08611 1.01955 1.21526 0.97790 0.95438 0.91890 1.20903 0.86225 0.87985 0.82593 1.90484 1.42388 1.63795 1.54536 1.41922 1.40270 1.26409 1.12277 1.19647 1.23164 1.05494 0.98404 0.90377 1.26069 0.97933 1.02091 0.95169 1.69670 1.36553 1.42033 1.07720 0.84966 0.78218 0.77440 0.77557 1.19553 1.19304 1.19874 1.83918 1.17174 1.36393 1.71985 0.88290 0.90932 0.87673 0.81587 0.81955 0.85018 0.82118 0.89891 0.89701 0.89067 0.87041 0.91729 0.94372 0.90784 0.92622 0.91313 0.83626 0.90997 0.88210 0.76902 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.42 71.23 0.74 -0.23 16 2 C -0.03 -0.63 7.32 24.83 0.18 -0.45 16 3 C -0.23 -4.48 10.81 22.19 0.24 -4.24 16 4 C -0.20 -4.12 10.81 22.19 0.24 -3.88 16 5 C -0.02 -0.44 5.81 24.84 0.14 -0.30 16 6 C -0.05 -0.70 4.79 29.10 0.14 -0.56 16 7 C 0.50 10.67 7.67 87.66 0.67 11.34 16 8 O -0.58 -19.12 15.61 -3.01 -0.05 -19.16 16 9 N -0.61 -9.32 2.87 -846.77 -2.43 -11.75 16 10 C 0.06 0.34 10.24 127.77 1.31 1.65 16 11 C 0.12 2.09 5.41 86.38 0.47 2.56 16 12 C -0.12 -2.69 5.80 30.60 0.18 -2.51 16 13 C 0.07 1.62 5.69 86.30 0.49 2.11 16 14 N -0.69 -23.36 6.13 -517.91 -3.17 -26.53 16 15 C 0.07 2.37 6.17 85.56 0.53 2.90 16 16 C 0.44 21.59 7.82 87.66 0.69 22.28 16 17 O -0.63 -36.14 15.78 -3.06 -0.05 -36.19 16 18 N -0.57 -30.22 5.29 -306.99 -1.62 -31.84 16 19 C -0.34 -19.66 9.68 84.04 0.81 -18.84 16 20 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 21 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 22 N -0.92 -50.25 13.05 21.66 0.28 -49.97 16 23 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 27 O -0.20 -5.03 10.65 -2.45 -0.03 -5.06 16 28 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 32 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.13 1.21 7.40 -2.39 -0.02 1.19 16 34 H 0.16 0.81 8.11 -2.39 -0.02 0.79 16 35 H 0.08 0.12 8.14 -2.38 -0.02 0.10 16 36 H 0.08 0.37 8.07 -2.38 -0.02 0.35 16 37 H 0.09 0.18 6.44 -2.39 -0.02 0.16 16 38 H 0.11 1.20 8.07 -2.39 -0.02 1.18 16 39 H 0.06 1.43 7.42 -2.39 -0.02 1.41 16 40 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.35 11.87 8.43 -89.69 -0.76 11.11 16 45 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 46 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 47 H 0.40 19.82 7.90 -92.71 -0.73 19.08 16 48 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -85.34 409.02 1.75 -83.59 By element: Atomic # 1 Polarization: 40.18 SS G_CDS: -0.51 Total: 39.67 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 7.30 Total: 11.61 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -6.95 Total: -120.10 kcal Atomic # 8 Polarization: -60.29 SS G_CDS: -0.12 Total: -60.41 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -85.34 1.75 -83.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754375119.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.792 kcal (2) G-P(sol) polarization free energy of solvation -85.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds