Wall clock time and date at job start Tue Mar 31 2020 20:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41382 * 126.58161 * 2 1 4 4 C 1.34505 * 106.84567 * 179.97438 * 3 2 1 5 5 O 1.34307 * 108.42111 * 359.73124 * 4 3 2 6 6 C 1.34304 * 109.47132 * 0.43938 * 5 4 3 7 7 C 1.50700 * 125.78579 * 179.82898 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.68837 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46506 * 120.00264 * 0.28128 * 10 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 13 13 C 1.53002 * 109.47088 * 89.99979 * 12 10 8 14 14 N 1.46902 * 109.47307 * 180.02562 * 13 12 10 15 15 C 1.46893 * 110.99915 * 66.04661 * 14 13 12 16 16 C 1.46903 * 111.00065 * 190.00288 * 14 13 12 17 17 C 1.50693 * 109.46907 * 170.00018 * 16 14 13 18 18 O 1.21290 * 120.00443 * 359.97438 * 17 16 14 19 19 N 1.34784 * 119.99856 * 180.02562 * 17 16 14 20 20 C 1.37092 * 119.99888 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00369 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99634 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99610 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00246 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46861 * 89.99832 * 24 22 20 26 26 H 1.48491 * 109.47133 * 210.00019 * 24 22 20 27 27 H 1.48501 * 109.46959 * 330.00332 * 24 22 20 28 28 H 1.08998 * 109.47554 * 270.04736 * 1 2 3 29 29 H 1.08995 * 109.46894 * 30.05613 * 1 2 3 30 30 H 1.09001 * 109.46766 * 150.04953 * 1 2 3 31 31 H 1.08007 * 126.57476 * 359.96955 * 3 2 1 32 32 H 1.07999 * 125.79214 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.47210 * 149.69130 * 7 6 5 34 34 H 1.08994 * 109.47551 * 29.68783 * 7 6 5 35 35 H 1.08998 * 109.46921 * 89.99095 * 11 10 8 36 36 H 1.08994 * 109.46996 * 209.99677 * 11 10 8 37 37 H 1.09001 * 109.46578 * 329.99540 * 11 10 8 38 38 H 1.09001 * 109.47567 * 210.00057 * 12 10 8 39 39 H 1.09005 * 109.47076 * 330.00563 * 12 10 8 40 40 H 1.08999 * 109.47707 * 300.00330 * 13 12 10 41 41 H 1.09005 * 109.46685 * 60.00344 * 13 12 10 42 42 H 1.09003 * 109.47310 * 60.00347 * 15 14 13 43 43 H 1.08998 * 109.47321 * 179.97438 * 15 14 13 44 44 H 1.08993 * 109.47569 * 300.00315 * 15 14 13 45 45 H 1.09002 * 109.46958 * 290.00294 * 16 14 13 46 46 H 1.09001 * 109.46996 * 49.99846 * 16 14 13 47 47 H 0.97002 * 119.99496 * 359.97438 * 19 17 16 48 48 H 0.96998 * 119.99965 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6156 0.6811 0.0006 5 8 3.5848 -0.6616 0.0069 6 6 2.3087 -1.0801 0.0007 7 6 1.8523 -2.5164 0.0011 8 6 1.7006 -2.9956 -1.4196 9 8 1.9401 -2.2450 -2.3417 10 7 1.3048 -4.2602 -1.6656 11 6 1.0160 -5.1672 -0.5519 12 6 1.1632 -4.7280 -3.0467 13 6 2.4903 -5.3226 -3.5224 14 7 2.3485 -5.7911 -4.9074 15 6 2.1217 -4.6652 -5.8233 16 6 3.5188 -6.5776 -5.3196 17 6 3.2366 -7.2426 -6.6421 18 8 2.1658 -7.0779 -7.1875 19 7 4.1737 -8.0211 -7.2185 20 6 3.9172 -8.6257 -8.4219 21 1 2.9641 -8.4784 -8.9079 22 6 4.8836 -9.4279 -9.0163 23 7 4.6376 -10.0077 -10.1696 24 14 6.5325 -9.6821 -8.1760 25 1 6.4554 -10.8657 -7.2824 26 1 7.5821 -9.9044 -9.2026 27 1 6.8706 -8.4783 -7.3749 28 1 -0.3634 0.0008 1.0276 29 1 -0.3633 0.8894 -0.5147 30 1 -0.3633 -0.8905 -0.5131 31 1 2.0366 2.1690 -0.0005 32 1 4.5060 1.2924 0.0011 33 1 0.8938 -2.5930 0.5146 34 1 2.5902 -3.1320 0.5154 35 1 -0.0361 -5.0844 -0.2794 36 1 1.2341 -6.1921 -0.8520 37 1 1.6353 -4.8998 0.3043 38 1 0.3857 -5.4904 -3.0942 39 1 0.8900 -3.8899 -3.6879 40 1 3.2679 -4.5603 -3.4749 41 1 2.7634 -6.1607 -2.8811 42 1 2.9668 -3.9787 -5.7714 43 1 2.0208 -5.0401 -6.8418 44 1 1.2100 -4.1414 -5.5365 45 1 4.3817 -5.9194 -5.4206 46 1 3.7282 -7.3385 -4.5677 47 1 5.0299 -8.1531 -6.7821 48 1 5.3123 -10.5675 -10.5847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320041021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:51 Heat of formation + Delta-G solvation = -34.963397 kcal Electronic energy + Delta-G solvation = -28791.917947 eV Core-core repulsion = 24656.636608 eV Total energy + Delta-G solvation = -4135.281339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.86425 -40.16794 -38.73566 -36.86662 -35.53043 -34.56695 -33.88270 -32.58425 -31.65708 -30.25592 -28.99409 -27.82509 -27.07335 -26.45750 -25.12412 -23.73742 -21.80350 -21.28745 -20.26097 -19.37925 -19.23274 -18.22370 -17.60131 -17.31755 -16.59449 -16.17164 -15.99312 -15.81881 -15.25248 -14.97407 -14.74492 -14.49136 -14.06308 -14.02058 -13.71626 -13.45475 -13.34660 -13.34205 -13.07540 -13.01096 -12.90980 -12.75724 -12.61616 -12.50098 -12.38535 -12.08707 -11.89215 -11.71291 -11.43437 -11.28773 -11.00296 -10.81726 -10.58254 -10.16413 -9.95983 -9.84898 -9.51891 -9.03709 -8.61528 -8.52033 -8.15989 -7.94563 -6.29241 -3.80344 1.42146 2.27810 2.31043 2.58166 2.86702 3.04126 3.07969 3.16144 3.76320 4.03418 4.12085 4.16626 4.30673 4.53747 4.62965 4.70591 4.77650 4.81318 4.88653 4.92397 5.00425 5.17500 5.19201 5.24457 5.30221 5.31651 5.46072 5.48684 5.54604 5.56023 5.69066 5.71438 5.75260 5.85476 5.88716 5.92329 5.97208 6.01713 6.21805 6.29123 6.57201 6.88558 7.03063 7.17787 7.31690 7.60738 7.86931 8.16818 8.62555 8.97439 9.44675 9.86062 10.83933 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.021128 B = 0.001942 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.933223 B =14416.183068 C =14784.742461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.164 4.164 3 C -0.211 4.211 4 C -0.035 4.035 5 O -0.172 6.172 6 C 0.000 4.000 7 C -0.058 4.058 8 C 0.511 3.489 9 O -0.521 6.521 10 N -0.616 5.616 11 C 0.073 3.927 12 C 0.118 3.882 13 C 0.041 3.959 14 N -0.516 5.516 15 C 0.020 3.980 16 C 0.044 3.956 17 C 0.454 3.546 18 O -0.558 6.558 19 N -0.592 5.592 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.147 0.853 32 H 0.202 0.798 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.016 0.984 43 H 0.096 0.904 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.274 16.821 28.085 33.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.165 4.165 3 C -0.230 4.230 4 C -0.102 4.102 5 O -0.067 6.067 6 C -0.050 4.050 7 C -0.098 4.098 8 C 0.298 3.702 9 O -0.396 6.396 10 N -0.350 5.350 11 C -0.070 4.070 12 C -0.004 4.004 13 C -0.088 4.088 14 N -0.240 5.240 15 C -0.128 4.128 16 C -0.087 4.087 17 C 0.240 3.760 18 O -0.440 6.440 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.165 0.835 32 H 0.219 0.781 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.035 0.965 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.202 0.798 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.983 16.684 27.001 32.129 hybrid contribution 2.192 0.329 0.620 2.301 sum -2.792 17.014 27.621 32.561 Atomic orbital electron populations 1.20175 0.89301 1.02808 1.01714 1.20161 0.97036 0.92035 1.07314 1.21680 0.92614 0.99759 1.08968 1.23960 0.99782 0.80477 1.06019 1.83984 1.28555 1.22897 1.71313 1.21232 0.81304 0.94917 1.07568 1.20110 1.03956 0.89744 0.95979 1.20423 0.77153 0.81633 0.90956 1.90769 1.48474 1.54378 1.46019 1.47845 1.67963 1.11512 1.07700 1.21905 1.01210 0.94796 0.89107 1.21497 0.97715 1.00342 0.80846 1.22436 0.96975 0.98798 0.90594 1.61525 1.38571 1.23044 1.00873 1.22590 0.99442 0.91254 0.99485 1.21890 0.91732 0.97555 0.97572 1.19625 0.85701 0.83655 0.87054 1.90525 1.24531 1.63867 1.65046 1.42216 1.14766 1.44908 1.21280 1.19426 1.03981 1.24630 0.95151 0.86252 1.25038 0.98262 0.96891 0.96039 1.69620 1.35115 1.31430 1.16045 0.86674 0.84098 0.78832 0.79802 1.19620 1.20213 1.19552 0.91484 0.91364 0.91889 0.83506 0.78099 0.86075 0.87082 0.92079 0.90264 0.91015 0.89185 0.89442 0.94757 0.90943 0.96517 0.88531 0.91862 0.93371 0.89348 0.79751 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 9.99 36.01 0.36 -0.27 16 2 C -0.16 -1.64 6.16 -104.74 -0.65 -2.29 16 3 C -0.21 -1.95 10.87 -39.71 -0.43 -2.38 16 4 C -0.03 -0.31 12.09 29.41 0.36 0.04 16 5 O -0.17 -1.94 10.65 5.70 0.06 -1.88 16 6 C 0.00 0.00 5.81 -35.62 -0.21 -0.21 16 7 C -0.06 -0.44 4.41 -29.03 -0.13 -0.57 16 8 C 0.51 5.61 7.67 -10.98 -0.08 5.52 16 9 O -0.52 -8.19 15.61 5.55 0.09 -8.11 16 10 N -0.62 -5.66 2.87 -181.57 -0.52 -6.18 16 11 C 0.07 0.36 10.25 59.85 0.61 0.97 16 12 C 0.12 1.36 5.33 -4.04 -0.02 1.34 16 13 C 0.04 0.54 5.28 -3.82 -0.02 0.52 16 14 N -0.52 -8.58 4.50 -244.38 -1.10 -9.68 16 15 C 0.02 0.34 8.96 60.06 0.54 0.88 16 16 C 0.04 0.77 5.45 -4.98 -0.03 0.74 16 17 C 0.45 10.47 7.47 -10.99 -0.08 10.39 16 18 O -0.56 -14.98 13.91 5.55 0.08 -14.90 16 19 N -0.59 -14.29 5.09 -10.96 -0.06 -14.34 16 20 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 21 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.93 13.96 55.50 0.77 -25.16 16 24 Si 0.88 19.56 27.74 -169.99 -4.71 14.84 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 27 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.48 7.78 -51.93 -0.40 0.08 16 31 H 0.15 1.03 8.06 -52.48 -0.42 0.60 16 32 H 0.20 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 0.56 7.73 -51.93 -0.40 0.16 16 34 H 0.11 0.60 7.40 -51.93 -0.38 0.22 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 37 H 0.07 0.21 6.43 -51.93 -0.33 -0.13 16 38 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16 39 H 0.09 1.18 5.83 -51.93 -0.30 0.88 16 40 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 41 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 42 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.10 1.96 5.82 -51.93 -0.30 1.66 16 44 H 0.06 0.98 6.47 -51.93 -0.34 0.64 16 45 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 46 H 0.09 1.32 7.93 -51.93 -0.41 0.91 16 47 H 0.37 7.86 5.76 -40.82 -0.24 7.63 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 396.32 15.07 5.97 5.97 Total: -1.00 -37.30 396.32 -6.75 -44.05 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.30 Total: 8.45 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -0.03 Total: 6.94 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.90 Total: -55.36 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.22 Total: -24.89 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.71 Total: 14.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.30 -6.75 -44.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320041021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.085 kcal (2) G-P(sol) polarization free energy of solvation -37.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds