Wall clock time and date at job start Tue Mar 31 2020 20:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 110.45650 * 2 1 4 4 O 1.21284 * 120.00019 * 238.91791 * 3 2 1 5 5 N 1.34781 * 119.99906 * 58.92247 * 3 2 1 6 6 C 1.47863 * 126.92593 * 185.36083 * 5 3 2 7 7 C 1.56018 * 105.10954 * 181.93769 * 6 5 3 8 8 H 1.09001 * 116.90475 * 159.22976 * 7 6 5 9 9 C 1.57078 * 99.60051 * 32.80691 * 7 6 5 10 10 C 1.49277 * 126.92511 * 5.36398 * 5 3 2 11 11 H 1.09001 * 116.75881 * 16.46258 * 10 5 3 12 12 C 1.56010 * 104.12822 * 246.89004 * 10 5 3 13 13 N 1.48290 * 105.06575 * 288.80057 * 12 10 5 14 14 C 1.46897 * 111.00080 * 122.54539 * 13 12 10 15 15 C 1.50700 * 109.47384 * 76.51283 * 14 13 12 16 16 O 1.21297 * 119.99996 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00211 * 180.02562 * 15 14 13 18 18 C 1.37092 * 119.99850 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00089 * 359.97438 * 18 17 15 20 20 C 1.38960 * 119.99655 * 179.72632 * 18 17 15 21 21 N 1.31407 * 120.00194 * 0.27063 * 20 18 17 22 22 Si 1.86799 * 119.99702 * 180.27132 * 20 18 17 23 23 H 1.48498 * 109.47489 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.46992 * 119.99978 * 22 20 18 25 25 H 1.48496 * 109.47390 * 239.99542 * 22 20 18 26 26 C 1.54512 * 110.62792 * 237.31822 * 2 1 3 27 27 C 1.54480 * 104.06346 * 241.30193 * 26 2 1 28 28 O 1.44426 * 104.79896 * 336.01981 * 27 26 2 29 29 C 1.44418 * 105.27862 * 40.51607 * 28 27 26 30 30 H 1.09005 * 109.46994 * 53.74355 * 1 2 3 31 31 H 1.08998 * 109.47254 * 173.74469 * 1 2 3 32 32 H 1.09002 * 109.47108 * 293.74746 * 1 2 3 33 33 H 1.09003 * 110.31553 * 63.02837 * 6 5 3 34 34 H 1.09003 * 110.39816 * 300.88935 * 6 5 3 35 35 H 1.09004 * 112.35939 * 191.74551 * 9 7 6 36 36 H 1.09000 * 112.43703 * 64.35932 * 9 7 6 37 37 H 1.08996 * 110.32624 * 169.90370 * 12 10 5 38 38 H 1.08992 * 110.40814 * 47.73409 * 12 10 5 39 39 H 1.09000 * 109.47156 * 316.51017 * 14 13 12 40 40 H 1.09005 * 109.47488 * 196.51336 * 14 13 12 41 41 H 0.97002 * 119.99469 * 359.97438 * 17 15 14 42 42 H 0.96994 * 120.00334 * 180.02562 * 21 20 18 43 43 H 1.09011 * 110.50943 * 359.94042 * 26 2 1 44 44 H 1.08992 * 110.51285 * 122.65347 * 26 2 1 45 45 H 1.08997 * 110.37184 * 217.18845 * 27 26 2 46 46 H 1.09001 * 110.47176 * 94.89626 * 27 26 2 47 47 H 1.09002 * 110.37613 * 200.65896 * 29 28 27 48 48 H 1.08997 * 110.37502 * 78.31541 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4119 0.0000 4 8 2.7767 1.7906 -0.8996 5 7 1.7277 2.2539 0.9997 6 6 2.0630 3.6907 1.0977 7 6 1.4823 4.1511 2.4706 8 1 1.9018 5.0590 2.9040 9 6 1.6744 2.8271 3.2936 10 6 0.9514 1.9238 2.2313 11 1 0.8508 0.8673 2.4796 12 6 -0.3785 2.7232 2.0688 13 7 0.0001 4.1442 2.2599 14 6 -0.3689 4.9495 1.0881 15 6 -1.8535 5.2080 1.1035 16 8 -2.5370 4.7646 2.0021 17 7 -2.4219 5.9311 0.1183 18 6 -3.7724 6.1667 0.1327 19 1 -4.3808 5.7726 0.9332 20 6 -4.3575 6.9170 -0.8800 21 7 -3.6173 7.3962 -1.8543 22 14 -6.1964 7.2445 -0.8564 23 1 -6.7988 6.5995 0.3379 24 1 -6.4378 8.7088 -0.8035 25 1 -6.8147 6.6851 -2.0852 26 6 2.0744 -0.7808 -1.2171 27 6 2.8801 -1.9400 -0.5897 28 8 3.2417 -1.4679 0.7264 29 6 2.0713 -0.7798 1.2188 30 1 -0.3633 0.6078 -0.8287 31 1 -0.3633 -1.0215 -0.1120 32 1 -0.3633 0.4139 0.9407 33 1 1.5952 4.2448 0.2839 34 1 3.1438 3.8308 1.0778 35 1 1.1455 2.8508 4.2465 36 1 2.7246 2.5626 3.4169 37 1 -1.0988 2.4181 2.8278 38 1 -0.7930 2.5728 1.0721 39 1 -0.1034 4.4105 0.1786 40 1 0.1656 5.8991 1.1168 41 1 -1.8753 6.2854 -0.6005 42 1 -4.0256 7.9203 -2.5610 43 1 1.2534 -1.1690 -1.8202 44 1 2.7244 -0.1457 -1.8187 45 1 3.7743 -2.1431 -1.1789 46 1 2.2639 -2.8361 -0.5153 47 1 2.3442 -0.0915 2.0188 48 1 1.3295 -1.4967 1.5705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753424924.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:22 Heat of formation + Delta-G solvation = -62.270770 kcal Electronic energy + Delta-G solvation = -31099.594123 eV Core-core repulsion = 26963.128647 eV Total energy + Delta-G solvation = -4136.465476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65796 -40.15048 -38.22713 -37.77546 -34.41584 -33.99165 -33.46202 -31.34269 -30.81188 -30.51205 -29.42509 -26.89705 -26.55735 -25.46967 -24.25892 -23.39426 -22.21788 -21.51359 -20.15322 -19.47255 -18.59994 -17.81947 -17.29386 -17.03950 -16.35725 -16.21749 -15.81003 -15.48031 -15.16881 -15.03946 -14.62464 -14.44313 -13.88248 -13.86009 -13.63515 -13.40130 -13.21258 -13.08854 -12.81118 -12.50582 -12.46117 -12.19760 -12.11023 -11.83830 -11.78232 -11.60332 -11.53012 -11.45574 -11.30317 -11.22191 -11.14153 -10.92626 -10.87206 -10.35400 -10.28413 -10.23116 -9.76823 -9.51776 -8.90568 -8.46836 -7.98203 -7.94218 -6.42036 -3.82977 2.44149 2.63675 3.15415 3.25986 3.32758 3.61049 3.74583 3.89850 3.96545 4.09088 4.15287 4.23172 4.37797 4.46475 4.63412 4.68898 4.72928 4.83364 4.91682 5.01526 5.12638 5.17421 5.18996 5.23103 5.32022 5.37880 5.39029 5.42688 5.47924 5.54376 5.60792 5.63094 5.68261 5.74830 5.79645 5.84157 5.87716 5.94052 6.00877 6.13092 6.25627 6.40775 6.90779 7.06799 7.33858 7.54614 7.99241 8.05547 8.61192 9.17817 9.54104 10.05818 10.75817 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.002994 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.577437 B = 9349.773057 C =10051.436590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C 0.547 3.453 4 O -0.535 6.535 5 N -0.615 5.615 6 C 0.069 3.931 7 C 0.053 3.947 8 H 0.137 0.863 9 C -0.132 4.132 10 C 0.089 3.911 11 H 0.126 0.874 12 C 0.041 3.959 13 N -0.486 5.486 14 C 0.033 3.967 15 C 0.445 3.555 16 O -0.576 6.576 17 N -0.566 5.566 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C -0.144 4.144 27 C 0.046 3.954 28 O -0.371 6.371 29 C 0.054 3.946 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.061 0.939 47 H 0.095 0.905 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.093 -15.407 5.415 20.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C 0.336 3.664 4 O -0.412 6.412 5 N -0.350 5.350 6 C -0.054 4.054 7 C -0.056 4.056 8 H 0.154 0.846 9 C -0.170 4.170 10 C -0.014 4.014 11 H 0.144 0.856 12 C -0.088 4.088 13 N -0.209 5.209 14 C -0.098 4.098 15 C 0.230 3.770 16 O -0.460 6.460 17 N -0.203 5.203 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.182 4.182 27 C -0.030 4.030 28 O -0.289 6.289 29 C -0.023 4.023 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.118 0.882 45 H 0.112 0.888 46 H 0.079 0.921 47 H 0.114 0.886 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.889 -15.234 5.826 20.787 hybrid contribution -0.438 0.287 -1.541 1.628 sum 12.450 -14.946 4.285 19.919 Atomic orbital electron populations 1.21986 0.90872 1.03312 1.03850 1.22103 0.98157 0.93062 0.98106 1.19849 0.79729 0.86269 0.80590 1.90675 1.36938 1.77242 1.36297 1.49137 1.54989 1.10140 1.20716 1.23232 1.01221 0.81142 0.99847 1.24792 0.88814 0.98876 0.93105 0.84579 1.23933 1.00915 0.93944 0.98214 1.24415 0.92823 1.00022 0.84172 0.85631 1.23706 0.95050 0.87543 1.02489 1.64627 1.10373 1.08355 1.37570 1.22155 0.97061 0.98611 0.91987 1.19695 0.88307 0.84309 0.84672 1.90515 1.63731 1.54636 1.37093 1.41873 1.08938 1.46798 1.22699 1.19730 0.83175 1.30561 1.09254 0.87896 1.25261 1.00414 0.96854 0.95459 1.69617 1.36288 1.36045 1.12363 0.85814 0.82250 0.78075 0.78287 1.19220 1.20743 1.20803 1.23082 1.01070 0.97093 0.96967 1.23449 0.99744 0.95979 0.83851 1.89151 1.34819 1.73627 1.31322 1.23658 0.88493 0.94932 0.95222 0.91343 0.90944 0.90998 0.90144 0.91004 0.88192 0.89821 0.88746 0.91851 0.92867 0.89285 0.77583 0.91930 0.89682 0.88224 0.88839 0.92050 0.88646 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.02 37.16 0.30 -1.03 16 2 C -0.11 -1.16 0.69 -154.09 -0.11 -1.26 16 3 C 0.55 7.50 6.60 -10.99 -0.07 7.43 16 4 O -0.54 -9.28 15.69 5.55 0.09 -9.19 16 5 N -0.62 -7.48 2.89 -156.80 -0.45 -7.94 16 6 C 0.07 0.84 5.99 -1.68 -0.01 0.83 16 7 C 0.05 0.58 5.21 -62.32 -0.32 0.26 16 8 H 0.14 1.27 8.14 -51.93 -0.42 0.85 16 9 C -0.13 -1.19 6.80 -22.31 -0.15 -1.34 16 10 C 0.09 0.90 2.99 -62.57 -0.19 0.71 16 11 H 0.13 0.96 5.09 -51.93 -0.26 0.70 16 12 C 0.04 0.56 4.77 -1.45 -0.01 0.55 16 13 N -0.49 -7.29 4.84 -218.18 -1.06 -8.34 16 14 C 0.03 0.58 4.13 -4.98 -0.02 0.56 16 15 C 0.45 10.30 7.63 -10.98 -0.08 10.21 16 16 O -0.58 -15.19 15.47 5.54 0.09 -15.10 16 17 N -0.57 -14.26 5.29 -10.96 -0.06 -14.32 16 18 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 19 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 22 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.14 -1.44 6.32 -25.16 -0.16 -1.60 16 27 C 0.05 0.41 7.63 37.93 0.29 0.70 16 28 O -0.37 -4.17 11.65 -35.23 -0.41 -4.58 16 29 C 0.05 0.49 5.63 37.93 0.21 0.71 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.65 4.81 -51.93 -0.25 0.40 16 33 H 0.08 1.11 5.54 -51.93 -0.29 0.83 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.06 0.99 7.04 -51.93 -0.37 0.62 16 39 H 0.05 0.90 6.11 -51.93 -0.32 0.59 16 40 H 0.09 1.39 8.03 -51.93 -0.42 0.98 16 41 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.08 0.70 7.74 -51.92 -0.40 0.30 16 44 H 0.10 1.22 6.50 -51.93 -0.34 0.89 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 0.84 5.90 -51.93 -0.31 0.53 16 48 H 0.07 0.52 7.87 -51.93 -0.41 0.11 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -34.27 368.63 -8.11 -42.38 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -6.99 Total: 10.65 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -0.56 Total: 8.82 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.84 Total: -54.48 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.24 Total: -28.87 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.27 -8.11 -42.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753424924.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.893 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds