Wall clock time and date at job start Tue Mar 31 2020 20:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35135 * 125.61235 * 2 1 4 4 C 1.40365 * 107.11428 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.64518 * 180.02562 * 4 3 2 6 6 C 1.36545 * 106.70878 * 359.97438 * 4 3 2 7 7 C 1.46655 * 125.98729 * 179.97438 * 6 4 3 8 8 O 1.21688 * 120.00228 * 6.33358 * 7 6 4 9 9 N 1.34782 * 119.99884 * 186.33252 * 7 6 4 10 10 C 1.46504 * 119.99884 * 5.35063 * 9 7 6 11 11 C 1.46498 * 119.99946 * 185.34699 * 9 7 6 12 12 H 1.09000 * 109.47211 * 0.02562 * 11 9 7 13 13 C 1.53003 * 109.47205 * 240.00225 * 11 9 7 14 14 C 1.53003 * 109.46922 * 120.00110 * 11 9 7 15 15 N 1.46898 * 109.47091 * 305.00413 * 14 11 9 16 16 C 1.46902 * 110.99983 * 180.02562 * 15 14 11 17 17 C 1.50696 * 109.47075 * 179.97438 * 16 15 14 18 18 O 1.21285 * 120.00202 * 359.97438 * 17 16 15 19 19 N 1.34785 * 119.99776 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99740 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00334 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99646 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00137 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99707 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47236 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47237 * 119.99890 * 24 22 20 27 27 H 1.48499 * 109.47050 * 239.99899 * 24 22 20 28 28 O 1.33923 * 125.61945 * 180.32324 * 2 1 3 29 29 H 1.08998 * 109.47290 * 90.00296 * 1 2 3 30 30 H 1.09006 * 109.46406 * 210.00001 * 1 2 3 31 31 H 1.08994 * 109.47389 * 329.99720 * 1 2 3 32 32 H 1.07994 * 126.44251 * 0.02973 * 3 2 1 33 33 H 1.09001 * 109.47091 * 269.97007 * 5 4 3 34 34 H 1.08997 * 109.47423 * 29.96978 * 5 4 3 35 35 H 1.08995 * 109.47155 * 149.97006 * 5 4 3 36 36 H 1.08994 * 109.47265 * 275.30240 * 10 9 7 37 37 H 1.08998 * 109.47218 * 155.30176 * 10 9 7 38 38 H 1.09002 * 109.46977 * 35.30606 * 10 9 7 39 39 H 1.08995 * 109.46938 * 180.02562 * 13 11 9 40 40 H 1.09000 * 109.47060 * 300.00122 * 13 11 9 41 41 H 1.08994 * 109.46882 * 60.00367 * 13 11 9 42 42 H 1.09001 * 109.46892 * 64.99950 * 14 11 9 43 43 H 1.08995 * 109.47109 * 184.99618 * 14 11 9 44 44 H 1.00893 * 111.00284 * 56.04496 * 15 14 11 45 45 H 1.09001 * 109.46600 * 299.99561 * 16 15 14 46 46 H 1.09003 * 109.47468 * 59.99431 * 16 15 14 47 47 H 0.96999 * 119.99586 * 359.97438 * 19 17 16 48 48 H 0.97001 * 119.99938 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6533 -0.0006 5 6 4.8616 1.5146 -0.0003 6 6 3.5824 -0.7115 -0.0004 7 6 4.7416 -1.6099 -0.0013 8 8 5.8643 -1.1548 0.1138 9 7 4.5634 -2.9397 -0.1297 10 6 3.2251 -3.4781 -0.3856 11 6 5.7080 -3.8467 -0.0135 12 1 6.6122 -3.2682 0.1759 13 6 5.8691 -4.6341 -1.3154 14 6 5.4730 -4.8185 1.1447 15 7 5.1995 -4.0600 2.3726 16 6 4.9689 -4.9625 3.5085 17 6 4.6929 -4.1503 4.7474 18 8 4.6892 -2.9388 4.6900 19 7 4.4503 -4.7701 5.9194 20 6 4.1987 -4.0312 7.0465 21 1 4.1953 -2.9524 6.9953 22 6 3.9490 -4.6702 8.2548 23 7 3.9536 -5.9828 8.3172 24 14 3.6069 -3.6633 9.7906 25 1 3.6581 -2.2173 9.4561 26 1 2.2594 -4.0022 10.3147 27 1 4.6306 -3.9700 10.8217 28 8 2.2870 -1.0886 -0.0061 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3632 -0.8901 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.9612 2.1260 0.0005 33 1 5.1599 1.7225 -1.0279 34 1 4.6512 2.4524 0.5137 35 1 5.6684 0.9918 0.5135 36 1 2.6954 -3.5991 0.5593 37 1 3.3112 -4.4455 -0.8803 38 1 2.6732 -2.7903 -1.0261 39 1 6.7204 -5.3092 -1.2287 40 1 4.9648 -5.2126 -1.5044 41 1 6.0366 -3.9417 -2.1403 42 1 4.6205 -5.4579 0.9151 43 1 6.3608 -5.4344 1.2880 44 1 4.4194 -3.4332 2.2442 45 1 4.1131 -5.6032 3.2955 46 1 5.8535 -5.5791 3.6682 47 1 4.4529 -5.7390 5.9652 48 1 3.7789 -6.4289 9.1606 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753686248.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:21 Heat of formation + Delta-G solvation = -53.640201 kcal Electronic energy + Delta-G solvation = -29886.691198 eV Core-core repulsion = 25750.599971 eV Total energy + Delta-G solvation = -4136.091226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.83014 -39.89908 -38.23363 -36.95599 -34.75773 -34.05991 -33.71154 -32.70697 -31.65277 -31.15183 -28.07534 -27.57974 -27.41784 -26.84503 -24.95754 -23.28509 -22.40145 -21.55806 -20.09299 -19.35278 -19.11106 -17.85970 -17.70655 -16.75632 -16.55223 -16.23213 -15.53829 -15.31529 -15.00479 -14.50104 -14.31901 -14.12163 -13.94012 -13.72330 -13.55168 -13.40234 -13.32443 -13.18739 -13.08051 -12.93748 -12.86849 -12.60076 -12.45232 -12.35883 -12.06921 -11.84563 -11.70726 -11.60099 -11.56823 -11.39177 -11.06561 -10.91891 -10.31970 -10.19499 -10.00650 -9.70044 -9.48893 -8.86769 -8.46392 -8.36432 -8.00274 -7.92026 -6.38921 -3.79304 1.01706 2.22530 2.49582 2.97188 3.18321 3.19721 3.28549 3.36517 3.94738 4.09762 4.28712 4.39019 4.62669 4.72084 4.86117 4.97310 5.00363 5.07660 5.14877 5.15176 5.20633 5.27739 5.28851 5.36812 5.41985 5.43774 5.50294 5.53417 5.60786 5.65625 5.68589 5.77881 5.81449 5.89346 6.00571 6.03090 6.04158 6.14481 6.30123 6.38345 6.48782 6.82885 7.24888 7.26969 7.58400 7.69543 8.06217 8.10095 8.65172 9.21483 9.57819 10.10022 10.79073 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.003078 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.219733 B = 9094.554388 C =10568.397546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.015 3.985 3 C -0.223 4.223 4 C -0.082 4.082 5 C -0.097 4.097 6 C -0.082 4.082 7 C 0.610 3.390 8 O -0.510 6.510 9 N -0.604 5.604 10 C 0.076 3.924 11 C 0.138 3.862 12 H 0.113 0.887 13 C -0.159 4.159 14 C 0.050 3.950 15 N -0.665 5.665 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.580 6.580 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 O -0.157 6.157 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.153 0.847 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.029 0.971 43 H 0.084 0.916 44 H 0.348 0.652 45 H 0.041 0.959 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.063 4.646 -22.589 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.037 4.037 3 C -0.242 4.242 4 C -0.085 4.085 5 C -0.153 4.153 6 C -0.134 4.134 7 C 0.399 3.601 8 O -0.387 6.387 9 N -0.338 5.338 10 C -0.067 4.067 11 C 0.035 3.965 12 H 0.131 0.869 13 C -0.217 4.217 14 C -0.081 4.081 15 N -0.298 5.298 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.463 6.463 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 O -0.053 6.053 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.171 0.829 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.047 0.953 43 H 0.103 0.897 44 H 0.168 0.832 45 H 0.059 0.941 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.917 5.355 -22.244 23.212 hybrid contribution -1.281 -0.536 0.781 1.593 sum -5.199 4.819 -21.463 22.603 Atomic orbital electron populations 1.20396 0.84715 1.04653 1.03626 1.22786 0.94292 0.84495 1.02122 1.21447 0.91913 0.99710 1.11139 1.20591 0.96334 0.92222 0.99382 1.20448 0.94222 0.98155 1.02492 1.21729 0.81894 0.94010 1.15748 1.16523 0.86034 0.81079 0.76512 1.90827 1.22496 1.75263 1.50096 1.47701 1.09228 1.05566 1.71257 1.21880 0.83030 1.00021 1.01788 1.21242 0.90203 0.90901 0.94106 0.86933 1.22110 1.02359 1.00359 0.96911 1.22348 1.00936 0.94963 0.89836 1.59994 1.48340 1.19286 1.02166 1.21679 1.00533 0.94627 0.91327 1.19829 0.84296 0.88687 0.84575 1.90542 1.56345 1.13993 1.85437 1.41862 1.61984 1.09290 1.07080 1.19759 1.44371 0.92980 0.85558 0.87927 1.25249 0.97551 0.95846 0.99336 1.69621 1.49959 1.07444 1.27441 0.85810 0.77810 0.79916 0.80880 1.19223 1.20799 1.20723 1.84182 1.15923 1.34130 1.71106 0.89804 0.90077 0.89029 0.82941 0.91139 0.91461 0.89060 0.92374 0.90563 0.90490 0.90951 0.92314 0.91975 0.95322 0.89750 0.83192 0.94095 0.89523 0.77510 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.41 36.01 0.37 -0.14 16 2 C 0.02 0.17 7.31 -35.41 -0.26 -0.09 16 3 C -0.22 -2.55 10.73 -39.89 -0.43 -2.98 16 4 C -0.08 -1.14 6.20 -104.43 -0.65 -1.78 16 5 C -0.10 -1.21 9.89 36.00 0.36 -0.85 16 6 C -0.08 -1.22 6.70 -36.80 -0.25 -1.46 16 7 C 0.61 9.57 7.63 -12.86 -0.10 9.48 16 8 O -0.51 -9.25 14.06 5.20 0.07 -9.18 16 9 N -0.60 -7.82 1.83 -175.48 -0.32 -8.14 16 10 C 0.08 0.78 8.43 59.85 0.50 1.28 16 11 C 0.14 1.68 2.94 -67.93 -0.20 1.48 16 12 H 0.11 1.63 6.91 -51.93 -0.36 1.27 16 13 C -0.16 -1.37 9.18 37.16 0.34 -1.03 16 14 C 0.05 0.64 5.03 -3.82 -0.02 0.62 16 15 N -0.66 -11.78 6.12 -115.06 -0.70 -12.49 16 16 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 17 C 0.44 10.93 7.82 -10.98 -0.09 10.85 16 18 O -0.58 -16.70 15.78 5.55 0.09 -16.61 16 19 N -0.57 -14.78 5.29 -10.96 -0.06 -14.84 16 20 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 21 H 0.10 3.11 7.16 -52.49 -0.38 2.74 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.96 13.05 55.50 0.72 -24.24 16 24 Si 0.93 21.49 29.55 -169.99 -5.02 16.46 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 O -0.16 -2.03 7.53 5.00 0.04 -1.99 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.35 6.34 -51.93 -0.33 1.02 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.60 6.44 -51.93 -0.33 0.27 16 38 H 0.08 0.76 5.97 -51.93 -0.31 0.45 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.44 6.67 -51.93 -0.35 0.09 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.03 0.33 7.84 -51.93 -0.41 -0.08 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.35 6.70 7.56 -39.30 -0.30 6.40 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 47 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 396.84 15.07 5.98 5.98 Total: -1.00 -35.25 396.84 -7.17 -42.42 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -7.29 Total: 14.52 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -0.68 Total: 8.11 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.36 Total: -59.71 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: 0.20 Total: -27.78 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.25 -7.17 -42.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753686248.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.219 kcal (2) G-P(sol) polarization free energy of solvation -35.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds