Wall clock time and date at job start Tue Mar 31 2020 20:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35135 * 125.61235 * 2 1 4 4 C 1.40365 * 107.11428 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.64518 * 180.02562 * 4 3 2 6 6 C 1.36545 * 106.70878 * 359.97438 * 4 3 2 7 7 C 1.46655 * 125.98729 * 179.97438 * 6 4 3 8 8 O 1.21688 * 120.00228 * 6.33358 * 7 6 4 9 9 N 1.34782 * 119.99884 * 186.33252 * 7 6 4 10 10 C 1.46504 * 119.99884 * 5.35063 * 9 7 6 11 11 C 1.46498 * 119.99946 * 185.34699 * 9 7 6 12 12 H 1.09000 * 109.47211 * 0.02562 * 11 9 7 13 13 C 1.53003 * 109.47205 * 240.00225 * 11 9 7 14 14 C 1.53003 * 109.46922 * 120.00110 * 11 9 7 15 15 N 1.46898 * 109.47091 * 305.00413 * 14 11 9 16 16 C 1.46902 * 110.99983 * 180.02562 * 15 14 11 17 17 C 1.50696 * 109.47075 * 179.97438 * 16 15 14 18 18 O 1.21285 * 120.00202 * 359.97438 * 17 16 15 19 19 N 1.34785 * 119.99776 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99740 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00334 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99646 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00137 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99707 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47236 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47237 * 119.99890 * 24 22 20 27 27 H 1.48499 * 109.47050 * 239.99899 * 24 22 20 28 28 O 1.33923 * 125.61945 * 180.32324 * 2 1 3 29 29 H 1.08998 * 109.47290 * 90.00296 * 1 2 3 30 30 H 1.09006 * 109.46406 * 210.00001 * 1 2 3 31 31 H 1.08994 * 109.47389 * 329.99720 * 1 2 3 32 32 H 1.07994 * 126.44251 * 0.02973 * 3 2 1 33 33 H 1.09001 * 109.47091 * 269.97007 * 5 4 3 34 34 H 1.08997 * 109.47423 * 29.96978 * 5 4 3 35 35 H 1.08995 * 109.47155 * 149.97006 * 5 4 3 36 36 H 1.08994 * 109.47265 * 275.30240 * 10 9 7 37 37 H 1.08998 * 109.47218 * 155.30176 * 10 9 7 38 38 H 1.09002 * 109.46977 * 35.30606 * 10 9 7 39 39 H 1.08995 * 109.46938 * 180.02562 * 13 11 9 40 40 H 1.09000 * 109.47060 * 300.00122 * 13 11 9 41 41 H 1.08994 * 109.46882 * 60.00367 * 13 11 9 42 42 H 1.09001 * 109.46892 * 64.99950 * 14 11 9 43 43 H 1.08995 * 109.47109 * 184.99618 * 14 11 9 44 44 H 1.00893 * 111.00284 * 56.04496 * 15 14 11 45 45 H 1.09001 * 109.46600 * 299.99561 * 16 15 14 46 46 H 1.09003 * 109.47468 * 59.99431 * 16 15 14 47 47 H 0.96999 * 119.99586 * 359.97438 * 19 17 16 48 48 H 0.97001 * 119.99938 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6533 -0.0006 5 6 4.8616 1.5146 -0.0003 6 6 3.5824 -0.7115 -0.0004 7 6 4.7416 -1.6099 -0.0013 8 8 5.8643 -1.1548 0.1138 9 7 4.5634 -2.9397 -0.1297 10 6 3.2251 -3.4781 -0.3856 11 6 5.7080 -3.8467 -0.0135 12 1 6.6122 -3.2682 0.1759 13 6 5.8691 -4.6341 -1.3154 14 6 5.4730 -4.8185 1.1447 15 7 5.1995 -4.0600 2.3726 16 6 4.9689 -4.9625 3.5085 17 6 4.6929 -4.1503 4.7474 18 8 4.6892 -2.9388 4.6900 19 7 4.4503 -4.7701 5.9194 20 6 4.1987 -4.0312 7.0465 21 1 4.1953 -2.9524 6.9953 22 6 3.9490 -4.6702 8.2548 23 7 3.9536 -5.9828 8.3172 24 14 3.6069 -3.6633 9.7906 25 1 3.6581 -2.2173 9.4561 26 1 2.2594 -4.0022 10.3147 27 1 4.6306 -3.9700 10.8217 28 8 2.2870 -1.0886 -0.0061 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3632 -0.8901 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.9612 2.1260 0.0005 33 1 5.1599 1.7225 -1.0279 34 1 4.6512 2.4524 0.5137 35 1 5.6684 0.9918 0.5135 36 1 2.6954 -3.5991 0.5593 37 1 3.3112 -4.4455 -0.8803 38 1 2.6732 -2.7903 -1.0261 39 1 6.7204 -5.3092 -1.2287 40 1 4.9648 -5.2126 -1.5044 41 1 6.0366 -3.9417 -2.1403 42 1 4.6205 -5.4579 0.9151 43 1 6.3608 -5.4344 1.2880 44 1 4.4194 -3.4332 2.2442 45 1 4.1131 -5.6032 3.2955 46 1 5.8535 -5.5791 3.6682 47 1 4.4529 -5.7390 5.9652 48 1 3.7789 -6.4289 9.1606 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753686248.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:20 Heat of formation + Delta-G solvation = -78.833146 kcal Electronic energy + Delta-G solvation = -29887.783646 eV Core-core repulsion = 25750.599971 eV Total energy + Delta-G solvation = -4137.183674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.77294 -40.98773 -40.14452 -38.14985 -36.23322 -35.66352 -34.99778 -33.59397 -33.28656 -32.53478 -29.02085 -28.97074 -28.31573 -27.75011 -26.69196 -24.68304 -23.42851 -22.45833 -21.28295 -20.88527 -20.29585 -19.92842 -18.72611 -17.97137 -17.74528 -17.50841 -17.08025 -16.46606 -16.24550 -16.19217 -15.89070 -15.43632 -15.18117 -15.03253 -14.67989 -14.45047 -14.30025 -14.14323 -14.05715 -13.95269 -13.79790 -13.67360 -13.56120 -13.32045 -13.25382 -13.12514 -13.00504 -12.88167 -12.79993 -12.60427 -12.51343 -12.42375 -12.13836 -11.88300 -11.54923 -11.13911 -10.65027 -10.41875 -10.04639 -9.87102 -9.39573 -9.31190 -8.49653 -5.98549 0.00013 1.30882 1.34166 1.39453 1.53906 1.54326 2.01117 2.03704 2.09622 2.27151 2.87578 3.17123 3.41953 3.50667 3.74575 3.77958 3.89786 4.13817 4.17231 4.21351 4.30700 4.43713 4.44707 4.46167 4.50780 4.52739 4.57462 4.64853 4.65736 4.69666 4.71571 4.71977 4.83130 4.86371 4.95826 5.05163 5.14351 5.24402 5.26858 5.38015 5.45373 5.55269 5.85614 5.88452 6.07982 6.21882 6.30091 6.57414 6.96365 7.09812 7.52210 8.08795 8.67978 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.003078 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.219733 B = 9094.554388 C =10568.397546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.020 3.980 3 C -0.234 4.234 4 C -0.097 4.097 5 C -0.094 4.094 6 C -0.118 4.118 7 C 0.598 3.402 8 O -0.552 6.552 9 N -0.600 5.600 10 C 0.076 3.924 11 C 0.136 3.864 12 H 0.080 0.920 13 C -0.147 4.147 14 C 0.052 3.948 15 N -0.688 5.688 16 C 0.067 3.933 17 C 0.434 3.566 18 O -0.627 6.627 19 N -0.570 5.570 20 C -0.336 4.336 21 H 0.074 0.926 22 C -0.010 4.010 23 N -0.918 5.918 24 Si 0.992 3.008 25 H -0.277 1.277 26 H -0.267 1.267 27 H -0.269 1.269 28 O -0.161 6.161 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.180 0.820 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.100 0.900 44 H 0.336 0.664 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.397 0.603 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.782 3.418 -23.343 24.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.032 4.032 3 C -0.253 4.253 4 C -0.100 4.100 5 C -0.150 4.150 6 C -0.169 4.169 7 C 0.388 3.612 8 O -0.432 6.432 9 N -0.332 5.332 10 C -0.066 4.066 11 C 0.034 3.966 12 H 0.099 0.901 13 C -0.206 4.206 14 C -0.077 4.077 15 N -0.320 5.320 16 C -0.066 4.066 17 C 0.221 3.779 18 O -0.514 6.514 19 N -0.207 5.207 20 C -0.465 4.465 21 H 0.092 0.908 22 C -0.210 4.210 23 N -0.559 5.559 24 Si 0.816 3.184 25 H -0.201 1.201 26 H -0.192 1.192 27 H -0.194 1.194 28 O -0.058 6.058 29 H 0.127 0.873 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.197 0.803 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.118 0.882 44 H 0.154 0.846 45 H 0.087 0.913 46 H 0.126 0.874 47 H 0.232 0.768 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.646 4.047 -23.018 24.043 hybrid contribution -0.799 -0.145 0.995 1.284 sum -6.445 3.902 -22.022 23.276 Atomic orbital electron populations 1.20641 0.81418 1.05663 1.05495 1.23717 0.96037 0.83868 0.99620 1.21781 0.90762 1.01282 1.11477 1.20997 0.97794 0.92344 0.98865 1.20416 0.93090 0.98344 1.03144 1.21690 0.82459 0.94395 1.18328 1.16836 0.85945 0.82151 0.76307 1.90786 1.23960 1.76178 1.52323 1.47819 1.10497 1.04852 1.70001 1.22015 0.81563 1.01457 1.01560 1.21302 0.88805 0.90583 0.95941 0.90133 1.22035 1.04098 1.00096 0.94328 1.22480 1.02554 0.94931 0.87732 1.59990 1.47982 1.20122 1.03937 1.21548 1.02517 0.93876 0.88616 1.20956 0.82369 0.88669 0.85878 1.90511 1.58007 1.16488 1.86391 1.41903 1.62284 1.09381 1.07173 1.19673 1.47203 0.92186 0.87469 0.90779 1.26023 0.96416 0.97016 1.01559 1.69669 1.49264 1.08321 1.28637 0.84887 0.78490 0.77832 0.77199 1.20139 1.19198 1.19420 1.84172 1.15371 1.34991 1.71297 0.87323 0.89820 0.87195 0.80287 0.89821 0.89650 0.92076 0.93472 0.87472 0.90140 0.89240 0.90271 0.92400 0.92697 0.88158 0.84600 0.91267 0.87380 0.76848 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.41 71.24 0.74 -0.09 16 2 C 0.02 0.42 7.31 24.97 0.18 0.60 16 3 C -0.23 -5.19 10.73 22.07 0.24 -4.95 16 4 C -0.10 -2.77 6.20 -19.74 -0.12 -2.89 16 5 C -0.09 -2.46 9.89 71.24 0.70 -1.76 16 6 C -0.12 -3.63 6.70 24.07 0.16 -3.47 16 7 C 0.60 19.96 7.63 86.44 0.66 20.62 16 8 O -0.55 -21.79 14.06 -4.31 -0.06 -21.85 16 9 N -0.60 -15.72 1.83 -827.32 -1.52 -17.23 16 10 C 0.08 1.48 8.43 127.77 1.08 2.56 16 11 C 0.14 3.25 2.94 44.99 0.13 3.38 16 12 H 0.08 2.46 6.91 -2.39 -0.02 2.44 16 13 C -0.15 -2.22 9.18 71.98 0.66 -1.56 16 14 C 0.05 1.25 5.03 86.30 0.43 1.68 16 15 N -0.69 -24.28 6.12 -517.94 -3.17 -27.45 16 16 C 0.07 2.42 6.17 85.56 0.53 2.94 16 17 C 0.43 21.94 7.82 87.65 0.69 22.63 16 18 O -0.63 -37.70 15.78 -3.04 -0.05 -37.75 16 19 N -0.57 -30.33 5.29 -306.98 -1.62 -31.95 16 20 C -0.34 -19.75 9.68 84.04 0.81 -18.94 16 21 H 0.07 4.71 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 23 N -0.92 -50.05 13.05 21.66 0.28 -49.77 16 24 Si 0.99 43.85 29.55 68.60 2.03 45.88 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 O -0.16 -4.20 7.53 -5.04 -0.04 -4.24 16 29 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.99 6.34 -2.39 -0.02 1.98 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.11 1.38 6.44 -2.39 -0.02 1.36 16 38 H 0.08 1.52 5.97 -2.39 -0.01 1.51 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 0.88 6.67 -2.39 -0.02 0.87 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.05 1.05 7.84 -2.39 -0.02 1.04 16 43 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.34 13.22 7.56 -89.70 -0.68 12.54 16 45 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 47 H 0.40 19.82 7.90 -92.71 -0.73 19.08 16 48 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -81.01 396.84 2.80 -78.21 By element: Atomic # 1 Polarization: 45.91 SS G_CDS: -0.41 Total: 45.49 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 7.36 Total: 20.67 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -6.02 Total: -126.41 kcal Atomic # 8 Polarization: -63.69 SS G_CDS: -0.15 Total: -63.84 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -81.01 2.80 -78.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753686248.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.624 kcal (2) G-P(sol) polarization free energy of solvation -81.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds