Wall clock time and date at job start Tue Mar 31 2020 20:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35128 * 125.61915 * 2 1 4 4 C 1.40362 * 107.11507 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.64785 * 179.97438 * 4 3 2 6 6 C 1.36545 * 106.70703 * 0.02562 * 4 3 2 7 7 C 1.46665 * 125.98629 * 180.02562 * 6 4 3 8 8 O 1.21694 * 120.00001 * 352.67977 * 7 6 4 9 9 N 1.34777 * 119.99766 * 172.67512 * 7 6 4 10 10 C 1.46498 * 120.00111 * 3.44544 * 9 7 6 11 11 C 1.46502 * 119.99859 * 183.44354 * 9 7 6 12 12 H 1.09000 * 109.47003 * 0.02562 * 11 9 7 13 13 C 1.53003 * 109.46796 * 119.99951 * 11 9 7 14 14 C 1.52995 * 109.47059 * 240.00322 * 11 9 7 15 15 N 1.46894 * 109.47511 * 55.00247 * 14 11 9 16 16 C 1.46899 * 111.00467 * 180.02562 * 15 14 11 17 17 C 1.50692 * 109.47290 * 179.97438 * 16 15 14 18 18 O 1.21293 * 120.00294 * 0.02562 * 17 16 15 19 19 N 1.34784 * 119.99942 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00210 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99640 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00251 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00004 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00202 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47162 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47460 * 119.99769 * 24 22 20 27 27 H 1.48504 * 109.47025 * 239.99843 * 24 22 20 28 28 O 1.33938 * 125.61304 * 179.69817 * 2 1 3 29 29 H 1.08995 * 109.47467 * 89.99665 * 1 2 3 30 30 H 1.09008 * 109.46695 * 329.99316 * 1 2 3 31 31 H 1.09002 * 109.47057 * 210.00100 * 1 2 3 32 32 H 1.08001 * 126.44262 * 359.94568 * 3 2 1 33 33 H 1.08998 * 109.47504 * 90.02337 * 5 4 3 34 34 H 1.09002 * 109.47509 * 210.02758 * 5 4 3 35 35 H 1.09002 * 109.46922 * 330.03086 * 5 4 3 36 36 H 1.08996 * 109.47167 * 83.92956 * 10 9 7 37 37 H 1.08996 * 109.47065 * 203.93063 * 10 9 7 38 38 H 1.09002 * 109.47045 * 323.93136 * 10 9 7 39 39 H 1.09000 * 109.46962 * 60.00443 * 13 11 9 40 40 H 1.09003 * 109.46791 * 180.02562 * 13 11 9 41 41 H 1.09002 * 109.47344 * 299.99813 * 13 11 9 42 42 H 1.09003 * 109.46866 * 175.00216 * 14 11 9 43 43 H 1.09004 * 109.47042 * 294.99455 * 14 11 9 44 44 H 1.00911 * 110.99604 * 303.95164 * 15 14 11 45 45 H 1.09008 * 109.46714 * 299.99985 * 16 15 14 46 46 H 1.09002 * 109.46823 * 59.99175 * 16 15 14 47 47 H 0.97000 * 119.99955 * 359.97438 * 19 17 16 48 48 H 0.96991 * 120.00058 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6251 0.6530 0.0006 5 6 4.8618 1.5141 0.0003 6 6 3.5823 -0.7118 0.0004 7 6 4.7414 -1.6104 0.0013 8 8 5.8628 -1.1570 -0.1318 9 7 4.5645 -2.9382 0.1498 10 6 3.2108 -3.4919 0.2344 11 6 5.7260 -3.8278 0.2265 12 1 6.6401 -3.2396 0.1463 13 6 5.7129 -4.5693 1.5648 14 6 5.6688 -4.8409 -0.9185 15 7 5.5607 -4.1280 -2.1983 16 6 5.5027 -5.0711 -3.3231 17 6 5.3918 -4.3048 -4.6159 18 8 5.3643 -3.0923 -4.6018 19 7 5.3242 -4.9668 -5.7881 20 6 5.2238 -4.2697 -6.9643 21 1 5.1993 -3.1900 -6.9516 22 6 5.1547 -4.9521 -8.1726 23 7 5.1861 -6.2658 -8.1881 24 14 5.0186 -4.0023 -9.7753 25 1 5.0035 -2.5455 -9.4876 26 1 6.1809 -4.3241 -10.6417 27 1 3.7626 -4.3821 -10.4707 28 8 2.2870 -1.0889 0.0057 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 0.8900 0.5140 31 1 -0.3633 -0.8900 0.5139 32 1 1.9614 2.1260 -0.0008 33 1 5.1600 1.7221 1.0278 34 1 5.6685 0.9912 -0.5134 35 1 4.6514 2.4520 -0.5138 36 1 2.8156 -3.6405 -0.7705 37 1 3.2413 -4.4475 0.7578 38 1 2.5685 -2.7997 0.7788 39 1 4.7987 -5.1575 1.6453 40 1 6.5773 -5.2308 1.6221 41 1 5.7536 -3.8474 2.3805 42 1 6.5761 -5.4451 -0.9147 43 1 4.8012 -5.4878 -0.7884 44 1 4.7620 -3.5114 -2.2023 45 1 6.4087 -5.6772 -3.3361 46 1 4.6337 -5.7191 -3.2094 47 1 5.3474 -5.9365 -5.7994 48 1 5.1382 -6.7422 -9.0316 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753686249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:24 Heat of formation + Delta-G solvation = -51.675897 kcal Electronic energy + Delta-G solvation = -29804.146245 eV Core-core repulsion = 25668.140198 eV Total energy + Delta-G solvation = -4136.006048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.86491 -39.89566 -38.22282 -36.94886 -34.77274 -34.07552 -33.70605 -32.72662 -31.65544 -31.14481 -28.10326 -27.56998 -27.43240 -26.85001 -24.95254 -23.28072 -22.40761 -21.59833 -20.08976 -19.38295 -19.11511 -17.85076 -17.68332 -16.80406 -16.55042 -16.24625 -15.50966 -15.36134 -15.00422 -14.48883 -14.33893 -14.08633 -13.95202 -13.73582 -13.54965 -13.44114 -13.32957 -13.19245 -13.10333 -13.00067 -12.86971 -12.59285 -12.47531 -12.37004 -11.98972 -11.83900 -11.71319 -11.59626 -11.56346 -11.38674 -11.06149 -10.91666 -10.31411 -10.18855 -9.99460 -9.72671 -9.48219 -8.86446 -8.47810 -8.36019 -7.98880 -7.91165 -6.38278 -3.78665 0.99977 2.20618 2.46764 2.96640 3.18654 3.18846 3.29012 3.37072 3.95491 4.10311 4.28197 4.37723 4.59765 4.69900 4.86270 4.97491 4.99012 5.04088 5.13847 5.14554 5.21016 5.24871 5.29273 5.36101 5.40686 5.43659 5.48917 5.51599 5.60228 5.65532 5.67786 5.79178 5.82073 5.88617 6.01077 6.01998 6.03949 6.13377 6.30933 6.37775 6.48742 6.80369 7.25415 7.27712 7.59078 7.70887 8.07052 8.10829 8.65900 9.22187 9.58556 10.10812 10.79758 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010616 B = 0.002945 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.911819 B = 9504.373870 C =10863.020739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.012 3.988 3 C -0.222 4.222 4 C -0.083 4.083 5 C -0.097 4.097 6 C -0.082 4.082 7 C 0.607 3.393 8 O -0.506 6.506 9 N -0.604 5.604 10 C 0.072 3.928 11 C 0.138 3.862 12 H 0.113 0.887 13 C -0.159 4.159 14 C 0.050 3.950 15 N -0.664 5.664 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.579 6.579 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 O -0.156 6.156 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.153 0.847 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.028 0.972 44 H 0.348 0.652 45 H 0.087 0.913 46 H 0.041 0.959 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.177 5.420 22.549 24.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.040 4.040 3 C -0.241 4.241 4 C -0.086 4.086 5 C -0.154 4.154 6 C -0.133 4.133 7 C 0.396 3.604 8 O -0.383 6.383 9 N -0.337 5.337 10 C -0.071 4.071 11 C 0.035 3.965 12 H 0.131 0.869 13 C -0.218 4.218 14 C -0.080 4.080 15 N -0.296 5.296 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.463 6.463 19 N -0.203 5.203 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 O -0.053 6.053 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.170 0.830 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.046 0.954 44 H 0.168 0.832 45 H 0.105 0.895 46 H 0.059 0.941 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.006 6.133 22.258 24.127 hybrid contribution -1.160 -0.586 -0.906 1.584 sum -8.166 5.547 21.352 23.524 Atomic orbital electron populations 1.20395 0.84738 1.04175 1.04053 1.22814 0.94316 0.84615 1.02250 1.21444 0.91913 0.99697 1.11075 1.20593 0.96340 0.92211 0.99410 1.20457 0.94239 0.98161 1.02533 1.21773 0.81847 0.94063 1.15651 1.16554 0.86067 0.81095 0.76726 1.90846 1.22587 1.75278 1.49561 1.47704 1.07537 1.05962 1.72480 1.21974 0.82717 0.99991 1.02428 1.21242 0.89978 0.91257 0.93999 0.86918 1.22120 1.02558 1.00620 0.96474 1.22337 1.01127 0.95037 0.89540 1.60007 1.49892 1.19668 1.00079 1.21682 1.01068 0.94317 0.91125 1.19831 0.84350 0.88479 0.84710 1.90546 1.55095 1.13786 1.86849 1.41863 1.64340 1.09204 1.04844 1.19759 1.46852 0.93341 0.82692 0.87924 1.25249 0.97476 0.95681 0.99602 1.69620 1.50901 1.06271 1.27702 0.85807 0.77689 0.79786 0.81121 1.19221 1.20730 1.20803 1.84219 1.15991 1.33916 1.71213 0.89496 0.89163 0.90315 0.82953 0.91123 0.88984 0.91459 0.92430 0.90586 0.89976 0.92286 0.90915 0.92023 0.89791 0.95361 0.83204 0.89528 0.94126 0.77513 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.41 36.01 0.37 -0.10 16 2 C 0.01 0.13 7.31 -35.41 -0.26 -0.13 16 3 C -0.22 -2.46 10.73 -39.89 -0.43 -2.89 16 4 C -0.08 -1.12 6.20 -104.44 -0.65 -1.76 16 5 C -0.10 -1.20 9.90 36.00 0.36 -0.85 16 6 C -0.08 -1.19 6.77 -36.79 -0.25 -1.44 16 7 C 0.61 9.50 7.64 -12.86 -0.10 9.40 16 8 O -0.51 -9.27 14.05 5.19 0.07 -9.20 16 9 N -0.60 -7.80 1.83 -175.49 -0.32 -8.12 16 10 C 0.07 0.74 8.73 59.85 0.52 1.26 16 11 C 0.14 1.67 2.94 -67.93 -0.20 1.47 16 12 H 0.11 1.63 6.90 -51.93 -0.36 1.27 16 13 C -0.16 -1.36 9.18 37.16 0.34 -1.02 16 14 C 0.05 0.64 5.03 -3.83 -0.02 0.62 16 15 N -0.66 -11.83 6.12 -115.06 -0.70 -12.53 16 16 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 17 C 0.44 10.98 7.82 -10.99 -0.09 10.90 16 18 O -0.58 -16.76 15.78 5.55 0.09 -16.67 16 19 N -0.57 -14.85 5.29 -10.96 -0.06 -14.91 16 20 C -0.30 -8.54 9.68 -14.94 -0.14 -8.69 16 21 H 0.10 3.12 7.16 -52.48 -0.38 2.75 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -25.04 13.05 55.50 0.72 -24.32 16 24 Si 0.93 21.56 29.55 -169.99 -5.02 16.53 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 O -0.16 -1.95 7.29 5.00 0.04 -1.92 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.36 6.32 -51.93 -0.33 1.03 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.60 6.44 -51.93 -0.33 0.27 16 38 H 0.08 0.81 5.41 -51.93 -0.28 0.53 16 39 H 0.06 0.44 6.67 -51.93 -0.35 0.09 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.03 0.32 7.84 -51.93 -0.41 -0.08 16 44 H 0.35 6.74 7.56 -39.29 -0.30 6.44 16 45 H 0.09 1.48 8.14 -51.92 -0.42 1.06 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.39 9.77 7.90 -40.82 -0.32 9.45 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 396.40 15.07 5.97 5.97 Total: -1.00 -35.42 396.40 -7.13 -42.55 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -7.26 Total: 14.43 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -0.66 Total: 8.18 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.36 Total: -59.88 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: 0.20 Total: -27.79 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.42 -7.13 -42.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753686249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.126 kcal (2) G-P(sol) polarization free energy of solvation -35.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds