Wall clock time and date at job start Tue Mar 31 2020 20:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35128 * 125.61915 * 2 1 4 4 C 1.40362 * 107.11507 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.64785 * 179.97438 * 4 3 2 6 6 C 1.36545 * 106.70703 * 0.02562 * 4 3 2 7 7 C 1.46665 * 125.98629 * 180.02562 * 6 4 3 8 8 O 1.21694 * 120.00001 * 352.67977 * 7 6 4 9 9 N 1.34777 * 119.99766 * 172.67512 * 7 6 4 10 10 C 1.46498 * 120.00111 * 3.44544 * 9 7 6 11 11 C 1.46502 * 119.99859 * 183.44354 * 9 7 6 12 12 H 1.09000 * 109.47003 * 0.02562 * 11 9 7 13 13 C 1.53003 * 109.46796 * 119.99951 * 11 9 7 14 14 C 1.52995 * 109.47059 * 240.00322 * 11 9 7 15 15 N 1.46894 * 109.47511 * 55.00247 * 14 11 9 16 16 C 1.46899 * 111.00467 * 180.02562 * 15 14 11 17 17 C 1.50692 * 109.47290 * 179.97438 * 16 15 14 18 18 O 1.21293 * 120.00294 * 0.02562 * 17 16 15 19 19 N 1.34784 * 119.99942 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00210 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99640 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00251 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00004 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00202 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47162 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47460 * 119.99769 * 24 22 20 27 27 H 1.48504 * 109.47025 * 239.99843 * 24 22 20 28 28 O 1.33938 * 125.61304 * 179.69817 * 2 1 3 29 29 H 1.08995 * 109.47467 * 89.99665 * 1 2 3 30 30 H 1.09008 * 109.46695 * 329.99316 * 1 2 3 31 31 H 1.09002 * 109.47057 * 210.00100 * 1 2 3 32 32 H 1.08001 * 126.44262 * 359.94568 * 3 2 1 33 33 H 1.08998 * 109.47504 * 90.02337 * 5 4 3 34 34 H 1.09002 * 109.47509 * 210.02758 * 5 4 3 35 35 H 1.09002 * 109.46922 * 330.03086 * 5 4 3 36 36 H 1.08996 * 109.47167 * 83.92956 * 10 9 7 37 37 H 1.08996 * 109.47065 * 203.93063 * 10 9 7 38 38 H 1.09002 * 109.47045 * 323.93136 * 10 9 7 39 39 H 1.09000 * 109.46962 * 60.00443 * 13 11 9 40 40 H 1.09003 * 109.46791 * 180.02562 * 13 11 9 41 41 H 1.09002 * 109.47344 * 299.99813 * 13 11 9 42 42 H 1.09003 * 109.46866 * 175.00216 * 14 11 9 43 43 H 1.09004 * 109.47042 * 294.99455 * 14 11 9 44 44 H 1.00911 * 110.99604 * 303.95164 * 15 14 11 45 45 H 1.09008 * 109.46714 * 299.99985 * 16 15 14 46 46 H 1.09002 * 109.46823 * 59.99175 * 16 15 14 47 47 H 0.97000 * 119.99955 * 359.97438 * 19 17 16 48 48 H 0.96991 * 120.00058 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6251 0.6530 0.0006 5 6 4.8618 1.5141 0.0003 6 6 3.5823 -0.7118 0.0004 7 6 4.7414 -1.6104 0.0013 8 8 5.8628 -1.1570 -0.1318 9 7 4.5645 -2.9382 0.1498 10 6 3.2108 -3.4919 0.2344 11 6 5.7260 -3.8278 0.2265 12 1 6.6401 -3.2396 0.1463 13 6 5.7129 -4.5693 1.5648 14 6 5.6688 -4.8409 -0.9185 15 7 5.5607 -4.1280 -2.1983 16 6 5.5027 -5.0711 -3.3231 17 6 5.3918 -4.3048 -4.6159 18 8 5.3643 -3.0923 -4.6018 19 7 5.3242 -4.9668 -5.7881 20 6 5.2238 -4.2697 -6.9643 21 1 5.1993 -3.1900 -6.9516 22 6 5.1547 -4.9521 -8.1726 23 7 5.1861 -6.2658 -8.1881 24 14 5.0186 -4.0023 -9.7753 25 1 5.0035 -2.5455 -9.4876 26 1 6.1809 -4.3241 -10.6417 27 1 3.7626 -4.3821 -10.4707 28 8 2.2870 -1.0889 0.0057 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 0.8900 0.5140 31 1 -0.3633 -0.8900 0.5139 32 1 1.9614 2.1260 -0.0008 33 1 5.1600 1.7221 1.0278 34 1 5.6685 0.9912 -0.5134 35 1 4.6514 2.4520 -0.5138 36 1 2.8156 -3.6405 -0.7705 37 1 3.2413 -4.4475 0.7578 38 1 2.5685 -2.7997 0.7788 39 1 4.7987 -5.1575 1.6453 40 1 6.5773 -5.2308 1.6221 41 1 5.7536 -3.8474 2.3805 42 1 6.5761 -5.4451 -0.9147 43 1 4.8012 -5.4878 -0.7884 44 1 4.7620 -3.5114 -2.2023 45 1 6.4087 -5.6772 -3.3361 46 1 4.6337 -5.7191 -3.2094 47 1 5.3474 -5.9365 -5.7994 48 1 5.1382 -6.7422 -9.0316 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753686249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:23 Heat of formation + Delta-G solvation = -77.081555 kcal Electronic energy + Delta-G solvation = -29805.247917 eV Core-core repulsion = 25668.140198 eV Total energy + Delta-G solvation = -4137.107720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.78206 -40.98197 -40.14313 -38.14183 -36.23959 -35.67304 -34.99881 -33.59104 -33.28733 -32.52936 -29.01864 -28.97997 -28.30947 -27.75096 -26.69259 -24.68057 -23.42813 -22.46946 -21.27448 -20.88169 -20.32037 -19.93205 -18.68883 -17.99490 -17.75548 -17.51019 -17.07296 -16.46173 -16.24948 -16.20986 -15.88774 -15.42467 -15.20654 -14.98582 -14.68580 -14.44340 -14.33027 -14.15061 -14.06191 -13.95026 -13.80883 -13.69089 -13.56255 -13.31262 -13.25011 -13.11709 -13.00088 -12.82203 -12.78886 -12.59526 -12.50485 -12.42402 -12.14002 -11.88204 -11.55125 -11.12413 -10.65349 -10.41894 -10.04824 -9.86747 -9.39486 -9.30405 -8.49843 -5.98796 0.00347 1.31617 1.33995 1.39208 1.53505 1.53881 2.00959 2.04150 2.09219 2.27042 2.87773 3.16873 3.41677 3.50484 3.74602 3.77742 3.90463 4.14585 4.17213 4.21276 4.30526 4.43215 4.45089 4.45613 4.50562 4.52529 4.58394 4.65055 4.65980 4.69629 4.70564 4.72698 4.83576 4.89155 4.96325 5.05192 5.14505 5.25619 5.26714 5.37832 5.46036 5.56170 5.85850 5.88363 6.08317 6.22309 6.30645 6.57258 6.97761 7.09636 7.52040 8.08698 8.67829 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010616 B = 0.002945 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.911819 B = 9504.373870 C =10863.020739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.019 3.981 3 C -0.233 4.233 4 C -0.097 4.097 5 C -0.094 4.094 6 C -0.117 4.117 7 C 0.595 3.405 8 O -0.551 6.551 9 N -0.599 5.599 10 C 0.072 3.928 11 C 0.136 3.864 12 H 0.081 0.919 13 C -0.148 4.148 14 C 0.052 3.948 15 N -0.687 5.687 16 C 0.066 3.934 17 C 0.434 3.566 18 O -0.627 6.627 19 N -0.570 5.570 20 C -0.336 4.336 21 H 0.074 0.926 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.993 3.007 25 H -0.277 1.277 26 H -0.269 1.269 27 H -0.267 1.267 28 O -0.160 6.160 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.180 0.820 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.100 0.900 43 H 0.055 0.945 44 H 0.335 0.665 45 H 0.108 0.892 46 H 0.069 0.931 47 H 0.397 0.603 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 4.201 23.331 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.033 4.033 3 C -0.252 4.252 4 C -0.100 4.100 5 C -0.151 4.151 6 C -0.168 4.168 7 C 0.385 3.615 8 O -0.431 6.431 9 N -0.331 5.331 10 C -0.070 4.070 11 C 0.033 3.967 12 H 0.099 0.901 13 C -0.206 4.206 14 C -0.077 4.077 15 N -0.319 5.319 16 C -0.066 4.066 17 C 0.221 3.779 18 O -0.514 6.514 19 N -0.208 5.208 20 C -0.465 4.465 21 H 0.092 0.908 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.816 3.184 25 H -0.201 1.201 26 H -0.194 1.194 27 H -0.192 1.192 28 O -0.057 6.057 29 H 0.112 0.888 30 H 0.134 0.866 31 H 0.110 0.890 32 H 0.197 0.803 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.118 0.882 43 H 0.073 0.927 44 H 0.154 0.846 45 H 0.126 0.874 46 H 0.087 0.913 47 H 0.232 0.768 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.886 4.832 23.065 25.185 hybrid contribution -0.636 -0.196 -1.131 1.312 sum -9.522 4.636 21.934 24.357 Atomic orbital electron populations 1.20644 0.81355 1.06161 1.05043 1.23751 0.96075 0.83924 0.99584 1.21777 0.90700 1.01307 1.11428 1.20986 0.97796 0.92317 0.98893 1.20420 0.93150 0.98385 1.03125 1.21681 0.82423 0.94378 1.18330 1.16885 0.86005 0.82161 0.76449 1.90805 1.24185 1.76232 1.51905 1.47824 1.08844 1.05266 1.71170 1.22108 0.81300 1.01390 1.02208 1.21304 0.88609 0.90828 0.95927 0.90110 1.22044 1.04367 1.00464 0.93691 1.22474 1.02948 0.95150 0.87118 1.60002 1.49616 1.20392 1.01907 1.21552 1.03258 0.93778 0.87999 1.20960 0.82288 0.88326 0.86283 1.90515 1.56808 1.16260 1.87815 1.41905 1.64641 1.09350 1.04876 1.19674 1.49751 0.92521 0.84592 0.90787 1.26028 0.96181 0.96680 1.02166 1.69668 1.50098 1.07103 1.29035 0.84881 0.78547 0.77864 0.77088 1.20148 1.19397 1.19189 1.84207 1.15355 1.34779 1.71372 0.88758 0.86568 0.88962 0.80290 0.89877 0.92139 0.89611 0.93578 0.87500 0.89563 0.90273 0.89215 0.92342 0.88216 0.92736 0.84640 0.87378 0.91290 0.76844 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.41 71.24 0.74 0.01 16 2 C 0.02 0.37 7.31 24.97 0.18 0.55 16 3 C -0.23 -4.96 10.73 22.07 0.24 -4.73 16 4 C -0.10 -2.71 6.20 -19.74 -0.12 -2.83 16 5 C -0.09 -2.47 9.90 71.23 0.71 -1.76 16 6 C -0.12 -3.55 6.77 24.08 0.16 -3.39 16 7 C 0.60 19.86 7.64 86.44 0.66 20.52 16 8 O -0.55 -22.04 14.05 -4.33 -0.06 -22.10 16 9 N -0.60 -15.70 1.83 -827.33 -1.52 -17.21 16 10 C 0.07 1.40 8.73 127.77 1.12 2.51 16 11 C 0.14 3.24 2.94 44.99 0.13 3.37 16 12 H 0.08 2.46 6.90 -2.39 -0.02 2.45 16 13 C -0.15 -2.20 9.18 71.98 0.66 -1.53 16 14 C 0.05 1.26 5.03 86.30 0.43 1.69 16 15 N -0.69 -24.47 6.12 -517.95 -3.17 -27.64 16 16 C 0.07 2.42 6.17 85.55 0.53 2.95 16 17 C 0.43 22.09 7.82 87.65 0.69 22.77 16 18 O -0.63 -37.95 15.78 -3.07 -0.05 -38.00 16 19 N -0.57 -30.51 5.29 -306.98 -1.62 -32.13 16 20 C -0.34 -19.85 9.68 84.04 0.81 -19.03 16 21 H 0.07 4.73 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 23 N -0.92 -50.24 13.05 21.66 0.28 -49.96 16 24 Si 0.99 44.05 29.55 68.60 2.03 46.08 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 28 O -0.16 -3.99 7.29 -5.03 -0.04 -4.03 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.18 2.66 8.06 -2.91 -0.02 2.63 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 1.98 6.32 -2.39 -0.02 1.96 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.11 1.38 6.44 -2.39 -0.02 1.36 16 38 H 0.09 1.63 5.41 -2.39 -0.01 1.62 16 39 H 0.08 0.88 6.67 -2.39 -0.02 0.86 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.05 1.06 7.84 -2.38 -0.02 1.04 16 44 H 0.34 13.33 7.56 -89.69 -0.68 12.65 16 45 H 0.11 3.50 8.14 -2.38 -0.02 3.48 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.40 19.92 7.90 -92.71 -0.73 19.18 16 48 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -81.67 396.40 2.85 -78.82 By element: Atomic # 1 Polarization: 45.60 SS G_CDS: -0.41 Total: 45.19 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 7.40 Total: 20.99 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -6.03 Total: -126.95 kcal Atomic # 8 Polarization: -63.99 SS G_CDS: -0.15 Total: -64.13 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -81.67 2.85 -78.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753686249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.738 kcal (2) G-P(sol) polarization free energy of solvation -81.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds