Wall clock time and date at job start Tue Mar 31 2020 20:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30623 * 125.41996 * 2 1 4 4 C 1.33697 * 108.99437 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.27409 * 180.02562 * 4 3 2 6 6 C 1.36344 * 107.45117 * 359.97438 * 4 3 2 7 7 C 1.46724 * 126.63894 * 179.97438 * 6 4 3 8 8 O 1.21678 * 120.00322 * 6.03815 * 7 6 4 9 9 N 1.34776 * 119.99635 * 186.03489 * 7 6 4 10 10 C 1.46499 * 120.00337 * 355.70176 * 9 7 6 11 11 C 1.50703 * 109.46936 * 276.54530 * 10 9 7 12 12 H 1.07998 * 119.99873 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00107 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99982 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99978 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47138 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47265 * 119.99792 * 15 13 11 18 18 H 1.48494 * 109.47046 * 239.99834 * 15 13 11 19 19 C 1.46508 * 120.00104 * 175.69479 * 9 7 6 20 20 C 1.52998 * 109.46815 * 90.00084 * 19 9 7 21 21 N 1.46899 * 109.47041 * 180.02562 * 20 19 9 22 22 C 1.47019 * 111.00176 * 293.63851 * 21 20 19 23 23 C 1.53090 * 109.25827 * 177.60439 * 22 21 20 24 24 O 1.43022 * 109.25961 * 56.85113 * 23 22 21 25 25 C 1.43015 * 113.73455 * 301.32576 * 24 23 22 26 26 C 1.47009 * 111.00277 * 170.00044 * 21 20 19 27 27 O 1.33665 * 125.42904 * 180.28217 * 2 1 3 28 28 H 1.09002 * 109.46950 * 90.03066 * 1 2 3 29 29 H 1.09005 * 109.47316 * 210.02465 * 1 2 3 30 30 H 1.08996 * 109.47334 * 330.02722 * 1 2 3 31 31 H 1.09002 * 109.46856 * 269.97392 * 5 4 3 32 32 H 1.09002 * 109.46939 * 29.96694 * 5 4 3 33 33 H 1.09001 * 109.47003 * 149.97043 * 5 4 3 34 34 H 1.09001 * 109.47152 * 36.54057 * 10 9 7 35 35 H 1.08997 * 109.47544 * 156.54472 * 10 9 7 36 36 H 0.97002 * 120.00123 * 179.97438 * 14 13 11 37 37 H 1.09003 * 109.46414 * 330.00452 * 19 9 7 38 38 H 1.08999 * 109.47256 * 210.00592 * 19 9 7 39 39 H 1.09007 * 109.47060 * 60.00502 * 20 19 9 40 40 H 1.08999 * 109.47623 * 300.00283 * 20 19 9 41 41 H 1.08997 * 109.50443 * 297.54528 * 22 21 20 42 42 H 1.09007 * 109.50471 * 57.66929 * 22 21 20 43 43 H 1.09002 * 109.51060 * 296.91472 * 23 22 21 44 44 H 1.09001 * 109.54584 * 176.80497 * 23 22 21 45 45 H 1.08999 * 109.51069 * 298.73697 * 25 24 23 46 46 H 1.08997 * 109.53858 * 178.62609 * 25 24 23 47 47 H 1.08998 * 109.50715 * 302.33167 * 26 21 20 48 48 H 1.09000 * 109.50550 * 62.41665 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2640 1.0645 0.0000 4 6 3.5464 0.6864 -0.0006 5 6 4.7451 1.5997 -0.0002 6 6 3.5708 -0.6768 -0.0003 7 6 4.7636 -1.5312 -0.0013 8 8 5.8685 -1.0336 0.1084 9 7 4.6353 -2.8672 -0.1237 10 6 3.3028 -3.4749 -0.1610 11 6 2.7989 -3.6673 1.2462 12 1 3.4103 -3.3673 2.0845 13 6 1.5574 -4.2262 1.4636 14 7 0.8127 -4.5910 0.4429 15 14 0.9332 -4.4653 3.2079 16 1 1.9537 -3.9773 4.1701 17 1 -0.3268 -3.7011 3.3919 18 1 0.6767 -5.9080 3.4484 19 6 5.8285 -3.7120 -0.2196 20 6 6.2646 -4.1395 1.1832 21 7 7.4614 -4.9861 1.0872 22 6 7.1537 -6.2597 0.4203 23 6 8.4374 -7.0834 0.2881 24 8 9.0102 -7.2756 1.5844 25 6 9.3229 -6.0557 2.2622 26 6 8.0481 -5.2214 2.4144 27 8 2.2818 -1.0891 -0.0054 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 5.0342 1.8201 -1.0278 32 1 4.4947 2.5277 0.5138 33 1 5.5734 1.1117 0.5135 34 1 2.6206 -2.8216 -0.7049 35 1 3.3579 -4.4411 -0.6624 36 1 -0.0606 -4.9846 0.5958 37 1 6.6332 -3.1513 -0.6952 38 1 5.6007 -4.5963 -0.8147 39 1 5.4598 -4.7002 1.6589 40 1 6.4924 -3.2552 1.7783 41 1 6.4250 -6.8136 1.0120 42 1 6.7443 -6.0621 -0.5705 43 1 9.1462 -6.5532 -0.3480 44 1 8.2051 -8.0521 -0.1544 45 1 10.0574 -5.4956 1.6835 46 1 9.7306 -6.2804 3.2478 47 1 8.2917 -4.2661 2.8793 48 1 7.3335 -5.7582 3.0383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172726803.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:30 Heat of formation + Delta-G solvation = -46.733822 kcal Electronic energy + Delta-G solvation = -30781.434846 eV Core-core repulsion = 26645.643103 eV Total energy + Delta-G solvation = -4135.791743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.82254 -39.61950 -38.93086 -36.20628 -35.23181 -34.31977 -32.69289 -32.30241 -31.21100 -29.91968 -28.93342 -27.42316 -27.19978 -25.49185 -24.00537 -23.15460 -22.33732 -21.25119 -20.88756 -20.25698 -19.17004 -16.99320 -16.78989 -16.44113 -16.15518 -16.03966 -15.65118 -15.40399 -15.06867 -14.95796 -14.63801 -14.55558 -13.99726 -13.71839 -13.68096 -13.30895 -13.00343 -12.72802 -12.65856 -12.59343 -12.37513 -12.28350 -12.26377 -11.93803 -11.78462 -11.47555 -11.38256 -11.31582 -11.12169 -10.91040 -10.68806 -10.49263 -10.45498 -10.22439 -10.10014 -9.84919 -9.65695 -9.45899 -8.62347 -8.33464 -8.26821 -7.84212 -6.24231 -4.29460 1.44124 2.87899 3.04383 3.13976 3.23372 3.27704 3.58043 3.72332 3.83563 4.10937 4.27148 4.38098 4.88570 5.02472 5.04324 5.09789 5.15015 5.18086 5.19288 5.29101 5.43973 5.54632 5.58814 5.59188 5.64028 5.65191 5.79649 5.82106 5.86789 5.92820 5.95983 5.97974 6.00336 6.12461 6.22437 6.33158 6.36194 6.41319 6.57175 6.76158 7.02587 7.08400 7.13159 7.20085 7.38588 7.68597 7.97297 7.99405 8.17792 8.63898 8.78245 9.36260 10.83141 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010686 B = 0.004112 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.515607 B = 6807.542976 C = 8610.470727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.201 3.799 3 N -0.502 5.502 4 C 0.053 3.947 5 C -0.073 4.073 6 C -0.092 4.092 7 C 0.605 3.395 8 O -0.546 6.546 9 N -0.585 5.585 10 C 0.232 3.768 11 C -0.526 4.526 12 H 0.057 0.943 13 C 0.070 3.930 14 N -0.888 5.888 15 Si 0.888 3.112 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.131 3.869 20 C 0.043 3.957 21 N -0.535 5.535 22 C 0.012 3.988 23 C 0.065 3.935 24 O -0.389 6.389 25 C 0.066 3.934 26 C 0.018 3.982 27 O -0.132 6.132 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.039 0.961 36 H 0.264 0.736 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.058 0.942 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.460 1.399 -1.329 7.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.004 4.004 3 N -0.234 5.234 4 C -0.072 4.072 5 C -0.130 4.130 6 C -0.148 4.148 7 C 0.393 3.607 8 O -0.427 6.427 9 N -0.314 5.314 10 C 0.113 3.887 11 C -0.565 4.565 12 H 0.076 0.924 13 C -0.133 4.133 14 N -0.527 5.527 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.208 1.208 19 C 0.007 3.993 20 C -0.085 4.085 21 N -0.260 5.260 22 C -0.116 4.116 23 C -0.012 4.012 24 O -0.308 6.308 25 C -0.011 4.011 26 C -0.110 4.110 27 O -0.015 6.015 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.077 0.923 46 H 0.113 0.887 47 H 0.103 0.897 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.933 2.112 -1.539 8.352 hybrid contribution -1.218 -1.123 1.451 2.203 sum 6.715 0.989 -0.088 6.788 Atomic orbital electron populations 1.20254 0.81792 1.05074 1.04453 1.26436 0.96822 0.79674 0.97512 1.70239 1.01531 1.30414 1.21215 1.21881 0.93356 0.91325 1.00659 1.20263 0.92718 0.97146 1.02876 1.22817 0.83418 0.94317 1.14262 1.16446 0.85239 0.81840 0.77209 1.90746 1.24406 1.74431 1.53165 1.48162 1.09570 1.04920 1.68797 1.19732 0.76514 0.94218 0.98232 1.21375 1.01944 1.41341 0.91809 0.92446 1.24830 0.96366 0.95149 0.96947 1.69925 1.11308 1.41625 1.29811 0.86588 0.79004 0.77989 0.84834 1.19840 1.20671 1.20828 1.21239 0.87503 0.94372 0.96137 1.22511 0.90365 0.97041 0.98623 1.62182 1.29648 1.14784 1.19432 1.22858 0.97502 0.90455 1.00784 1.22671 0.93727 0.99979 0.84813 1.87957 1.82103 1.29924 1.30781 1.22644 0.95600 0.85425 0.97456 1.22748 0.96917 1.00641 0.90716 1.85089 1.15332 1.34417 1.66688 0.89103 0.88701 0.88689 0.90912 0.91240 0.88855 0.93051 0.94347 0.92651 0.90007 0.90843 0.92752 0.90546 0.93567 0.89284 0.92366 0.88625 0.92342 0.88737 0.89699 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.51 36.00 0.38 -0.43 16 2 C 0.20 3.77 8.32 -12.80 -0.11 3.66 16 3 N -0.50 -9.61 11.26 -7.07 -0.08 -9.69 16 4 C 0.05 1.03 7.16 -82.46 -0.59 0.44 16 5 C -0.07 -1.16 9.94 36.01 0.36 -0.80 16 6 C -0.09 -1.95 6.77 -36.84 -0.25 -2.20 16 7 C 0.60 12.93 7.58 -12.83 -0.10 12.84 16 8 O -0.55 -11.73 14.39 5.21 0.07 -11.65 16 9 N -0.59 -12.17 2.48 -176.58 -0.44 -12.61 16 10 C 0.23 5.42 4.81 -5.19 -0.02 5.39 16 11 C -0.53 -13.32 8.45 -34.44 -0.29 -13.61 16 12 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 13 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 14 N -0.89 -23.47 13.29 55.43 0.74 -22.73 16 15 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C 0.13 2.32 5.35 -4.04 -0.02 2.30 16 20 C 0.04 0.74 5.28 -3.83 -0.02 0.72 16 21 N -0.53 -7.85 4.73 -234.31 -1.11 -8.95 16 22 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 23 C 0.07 0.76 7.01 37.20 0.26 1.02 16 24 O -0.39 -5.13 10.83 -35.23 -0.38 -5.51 16 25 C 0.07 0.75 7.01 37.21 0.26 1.01 16 26 C 0.02 0.24 5.64 -3.71 -0.02 0.22 16 27 O -0.13 -2.87 6.86 4.45 0.03 -2.84 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.55 6.36 -51.93 -0.33 1.22 16 34 H 0.05 1.29 5.37 -51.93 -0.28 1.01 16 35 H 0.04 0.93 7.82 -51.93 -0.41 0.52 16 36 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 37 H 0.08 1.44 7.48 -51.93 -0.39 1.05 16 38 H 0.07 1.21 6.23 -51.93 -0.32 0.88 16 39 H 0.05 1.06 8.05 -51.93 -0.42 0.64 16 40 H 0.08 1.41 8.04 -51.93 -0.42 1.00 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.13 6.38 -51.93 -0.33 0.80 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 388.91 15.07 5.86 5.86 Total: -1.00 -29.79 388.91 -8.12 -37.90 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.51 Total: 2.57 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: -0.28 Total: 12.39 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.89 Total: -53.98 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.28 Total: -20.00 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.79 -8.12 -37.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172726803.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.831 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds