Wall clock time and date at job start Tue Mar 31 2020 20:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30623 * 125.41996 * 2 1 4 4 C 1.33697 * 108.99437 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.27409 * 180.02562 * 4 3 2 6 6 C 1.36344 * 107.45117 * 359.97438 * 4 3 2 7 7 C 1.46724 * 126.63894 * 179.97438 * 6 4 3 8 8 O 1.21678 * 120.00322 * 6.03815 * 7 6 4 9 9 N 1.34776 * 119.99635 * 186.03489 * 7 6 4 10 10 C 1.46499 * 120.00337 * 355.70176 * 9 7 6 11 11 C 1.50703 * 109.46936 * 276.54530 * 10 9 7 12 12 H 1.07998 * 119.99873 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00107 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99982 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99978 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47138 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47265 * 119.99792 * 15 13 11 18 18 H 1.48494 * 109.47046 * 239.99834 * 15 13 11 19 19 C 1.46508 * 120.00104 * 175.69479 * 9 7 6 20 20 C 1.52998 * 109.46815 * 90.00084 * 19 9 7 21 21 N 1.46899 * 109.47041 * 180.02562 * 20 19 9 22 22 C 1.47019 * 111.00176 * 293.63851 * 21 20 19 23 23 C 1.53090 * 109.25827 * 177.60439 * 22 21 20 24 24 O 1.43022 * 109.25961 * 56.85113 * 23 22 21 25 25 C 1.43015 * 113.73455 * 301.32576 * 24 23 22 26 26 C 1.47009 * 111.00277 * 170.00044 * 21 20 19 27 27 O 1.33665 * 125.42904 * 180.28217 * 2 1 3 28 28 H 1.09002 * 109.46950 * 90.03066 * 1 2 3 29 29 H 1.09005 * 109.47316 * 210.02465 * 1 2 3 30 30 H 1.08996 * 109.47334 * 330.02722 * 1 2 3 31 31 H 1.09002 * 109.46856 * 269.97392 * 5 4 3 32 32 H 1.09002 * 109.46939 * 29.96694 * 5 4 3 33 33 H 1.09001 * 109.47003 * 149.97043 * 5 4 3 34 34 H 1.09001 * 109.47152 * 36.54057 * 10 9 7 35 35 H 1.08997 * 109.47544 * 156.54472 * 10 9 7 36 36 H 0.97002 * 120.00123 * 179.97438 * 14 13 11 37 37 H 1.09003 * 109.46414 * 330.00452 * 19 9 7 38 38 H 1.08999 * 109.47256 * 210.00592 * 19 9 7 39 39 H 1.09007 * 109.47060 * 60.00502 * 20 19 9 40 40 H 1.08999 * 109.47623 * 300.00283 * 20 19 9 41 41 H 1.08997 * 109.50443 * 297.54528 * 22 21 20 42 42 H 1.09007 * 109.50471 * 57.66929 * 22 21 20 43 43 H 1.09002 * 109.51060 * 296.91472 * 23 22 21 44 44 H 1.09001 * 109.54584 * 176.80497 * 23 22 21 45 45 H 1.08999 * 109.51069 * 298.73697 * 25 24 23 46 46 H 1.08997 * 109.53858 * 178.62609 * 25 24 23 47 47 H 1.08998 * 109.50715 * 302.33167 * 26 21 20 48 48 H 1.09000 * 109.50550 * 62.41665 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2640 1.0645 0.0000 4 6 3.5464 0.6864 -0.0006 5 6 4.7451 1.5997 -0.0002 6 6 3.5708 -0.6768 -0.0003 7 6 4.7636 -1.5312 -0.0013 8 8 5.8685 -1.0336 0.1084 9 7 4.6353 -2.8672 -0.1237 10 6 3.3028 -3.4749 -0.1610 11 6 2.7989 -3.6673 1.2462 12 1 3.4103 -3.3673 2.0845 13 6 1.5574 -4.2262 1.4636 14 7 0.8127 -4.5910 0.4429 15 14 0.9332 -4.4653 3.2079 16 1 1.9537 -3.9773 4.1701 17 1 -0.3268 -3.7011 3.3919 18 1 0.6767 -5.9080 3.4484 19 6 5.8285 -3.7120 -0.2196 20 6 6.2646 -4.1395 1.1832 21 7 7.4614 -4.9861 1.0872 22 6 7.1537 -6.2597 0.4203 23 6 8.4374 -7.0834 0.2881 24 8 9.0102 -7.2756 1.5844 25 6 9.3229 -6.0557 2.2622 26 6 8.0481 -5.2214 2.4144 27 8 2.2818 -1.0891 -0.0054 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 5.0342 1.8201 -1.0278 32 1 4.4947 2.5277 0.5138 33 1 5.5734 1.1117 0.5135 34 1 2.6206 -2.8216 -0.7049 35 1 3.3579 -4.4411 -0.6624 36 1 -0.0606 -4.9846 0.5958 37 1 6.6332 -3.1513 -0.6952 38 1 5.6007 -4.5963 -0.8147 39 1 5.4598 -4.7002 1.6589 40 1 6.4924 -3.2552 1.7783 41 1 6.4250 -6.8136 1.0120 42 1 6.7443 -6.0621 -0.5705 43 1 9.1462 -6.5532 -0.3480 44 1 8.2051 -8.0521 -0.1544 45 1 10.0574 -5.4956 1.6835 46 1 9.7306 -6.2804 3.2478 47 1 8.2917 -4.2661 2.8793 48 1 7.3335 -5.7582 3.0383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172726803.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:29 Heat of formation + Delta-G solvation = -68.205924 kcal Electronic energy + Delta-G solvation = -30782.365947 eV Core-core repulsion = 26645.643103 eV Total energy + Delta-G solvation = -4136.722843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.34517 -40.93811 -40.31139 -37.62218 -36.65678 -35.88204 -34.58384 -33.68744 -32.22728 -31.31771 -30.19760 -29.25674 -28.54724 -26.82736 -25.12114 -24.93368 -23.73771 -22.72243 -22.32460 -21.37174 -20.76983 -18.84369 -18.36173 -17.81344 -17.70535 -17.17090 -17.09928 -16.80651 -16.41417 -16.21454 -16.05328 -15.97399 -15.37451 -15.09409 -15.05700 -14.61303 -14.42250 -14.24047 -14.09879 -14.05170 -13.81857 -13.50722 -13.45889 -13.32463 -13.15616 -13.08198 -12.92791 -12.70332 -12.57489 -12.33816 -12.21956 -11.94549 -11.89863 -11.76252 -11.69822 -11.45839 -11.09470 -10.71276 -10.60514 -9.91351 -9.56114 -9.44068 -8.22223 -6.32937 -0.11389 1.31110 1.35545 1.39046 1.44288 1.57034 2.04645 2.15623 2.36366 2.79330 2.96361 2.99964 3.08749 3.58532 3.76905 3.81683 3.90470 3.99561 4.07727 4.19032 4.29034 4.35832 4.38634 4.43352 4.47889 4.55816 4.59971 4.67534 4.68891 4.71943 4.74665 4.76176 4.80546 4.82139 4.87003 4.96191 4.97596 5.01622 5.07940 5.27470 5.41630 5.58657 5.70216 5.84719 5.89877 6.01777 6.16008 6.28824 6.60835 6.75731 7.03359 7.35378 8.84705 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010686 B = 0.004112 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.515607 B = 6807.542976 C = 8610.470727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.202 3.798 3 N -0.510 5.510 4 C 0.061 3.939 5 C -0.069 4.069 6 C -0.133 4.133 7 C 0.602 3.398 8 O -0.553 6.553 9 N -0.589 5.589 10 C 0.250 3.750 11 C -0.529 4.529 12 H 0.039 0.961 13 C 0.035 3.965 14 N -0.909 5.909 15 Si 0.938 3.062 16 H -0.282 1.282 17 H -0.270 1.270 18 H -0.278 1.278 19 C 0.132 3.868 20 C 0.060 3.940 21 N -0.533 5.533 22 C 0.010 3.990 23 C 0.068 3.932 24 O -0.404 6.404 25 C 0.069 3.931 26 C 0.015 3.985 27 O -0.158 6.158 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.038 0.962 35 H 0.027 0.973 36 H 0.268 0.732 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.025 0.975 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.116 0.884 45 H 0.068 0.932 46 H 0.117 0.883 47 H 0.091 0.909 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.743 1.835 -1.287 8.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.003 4.003 3 N -0.241 5.241 4 C -0.064 4.064 5 C -0.126 4.126 6 C -0.188 4.188 7 C 0.390 3.610 8 O -0.435 6.435 9 N -0.318 5.318 10 C 0.130 3.870 11 C -0.567 4.567 12 H 0.057 0.943 13 C -0.166 4.166 14 N -0.549 5.549 15 Si 0.765 3.235 16 H -0.207 1.207 17 H -0.195 1.195 18 H -0.203 1.203 19 C 0.010 3.990 20 C -0.069 4.069 21 N -0.258 5.258 22 C -0.118 4.118 23 C -0.008 4.008 24 O -0.323 6.323 25 C -0.007 4.007 26 C -0.114 4.114 27 O -0.043 6.043 28 H 0.133 0.867 29 H 0.106 0.894 30 H 0.140 0.860 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.044 0.956 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.134 0.866 45 H 0.087 0.913 46 H 0.135 0.865 47 H 0.109 0.891 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 8.234 2.547 -1.499 8.748 hybrid contribution -1.332 -1.199 1.426 2.290 sum 6.902 1.348 -0.073 7.033 Atomic orbital electron populations 1.20543 0.78601 1.05974 1.06293 1.27533 0.98475 0.78945 0.95349 1.70312 1.01400 1.30336 1.22095 1.22455 0.94459 0.91165 0.98332 1.20354 0.90986 0.97146 1.04153 1.22908 0.83408 0.95157 1.17327 1.16560 0.85507 0.81943 0.76973 1.90720 1.24642 1.74490 1.53674 1.48126 1.09496 1.05207 1.68957 1.19334 0.77521 0.93243 0.96893 1.21388 1.01979 1.41269 0.92085 0.94257 1.25369 0.96469 0.94955 0.99781 1.69986 1.11665 1.42068 1.31142 0.85814 0.78521 0.78070 0.81133 1.20725 1.19541 1.20348 1.21353 0.86594 0.94462 0.96615 1.22206 0.90561 0.96464 0.97685 1.62228 1.27881 1.15286 1.20447 1.22949 0.98484 0.89841 1.00498 1.22769 0.92663 1.00801 0.84603 1.87943 1.82099 1.30818 1.31451 1.22753 0.94485 0.84716 0.98787 1.22867 0.97509 1.01277 0.89698 1.85048 1.15854 1.35881 1.67558 0.86656 0.89447 0.85953 0.89122 0.89102 0.89772 0.94422 0.95545 0.92289 0.89457 0.89650 0.95637 0.92156 0.95382 0.88683 0.91195 0.86607 0.91327 0.86495 0.89104 0.95310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.49 10.51 71.23 0.75 -0.74 16 2 C 0.20 7.45 8.32 88.29 0.73 8.18 16 3 N -0.51 -18.96 11.26 -291.06 -3.28 -22.23 16 4 C 0.06 2.33 7.16 41.83 0.30 2.63 16 5 C -0.07 -2.11 9.94 71.24 0.71 -1.41 16 6 C -0.13 -5.73 6.77 24.05 0.16 -5.57 16 7 C 0.60 26.30 7.58 86.46 0.65 26.95 16 8 O -0.55 -24.01 14.39 -4.28 -0.06 -24.08 16 9 N -0.59 -25.22 2.48 -830.81 -2.06 -27.28 16 10 C 0.25 12.05 4.81 85.63 0.41 12.47 16 11 C -0.53 -27.48 8.45 25.60 0.22 -27.26 16 12 H 0.04 2.15 7.81 -2.91 -0.02 2.13 16 13 C 0.04 1.83 5.46 84.66 0.46 2.29 16 14 N -0.91 -48.29 13.29 21.45 0.28 -48.00 16 15 Si 0.94 41.71 29.54 68.60 2.03 43.74 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 19 C 0.13 4.78 5.35 86.38 0.46 5.24 16 20 C 0.06 2.13 5.28 86.30 0.46 2.59 16 21 N -0.53 -15.62 4.73 -895.22 -4.23 -19.85 16 22 C 0.01 0.27 5.44 86.31 0.47 0.74 16 23 C 0.07 1.47 7.01 72.01 0.50 1.98 16 24 O -0.40 -9.98 10.83 -148.98 -1.61 -11.60 16 25 C 0.07 1.47 7.01 72.02 0.50 1.97 16 26 C 0.01 0.38 5.64 86.32 0.49 0.87 16 27 O -0.16 -7.00 6.86 -7.01 -0.05 -7.04 16 28 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.08 2.74 6.36 -2.39 -0.02 2.73 16 34 H 0.04 1.96 5.37 -2.39 -0.01 1.94 16 35 H 0.03 1.32 7.82 -2.39 -0.02 1.31 16 36 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 37 H 0.09 3.07 7.48 -2.39 -0.02 3.05 16 38 H 0.09 2.84 6.23 -2.39 -0.01 2.83 16 39 H 0.03 1.04 8.05 -2.38 -0.02 1.02 16 40 H 0.06 2.32 8.04 -2.39 -0.02 2.30 16 41 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 2.36 6.38 -2.38 -0.02 2.35 16 43 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.09 2.22 8.09 -2.39 -0.02 2.21 16 48 H 0.03 0.82 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -64.16 388.91 -0.73 -64.89 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.96 Total: 20.52 kcal Atomic # 6 Polarization: 23.66 SS G_CDS: 7.28 Total: 30.94 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -9.28 Total: -117.37 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -1.72 Total: -42.72 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -64.16 -0.73 -64.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172726803.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.317 kcal (2) G-P(sol) polarization free energy of solvation -64.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds