Wall clock time and date at job start Tue Mar 31 2020 20:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99803 * 2 1 4 4 N 1.46505 * 109.46926 * 125.00376 * 3 2 1 5 5 C 1.46496 * 119.99896 * 270.00109 * 4 3 2 6 6 C 1.50705 * 109.47066 * 269.99622 * 5 4 3 7 7 H 1.08001 * 119.99987 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00127 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00059 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00144 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47052 * 60.00305 * 10 8 6 12 12 H 1.48498 * 109.47378 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47029 * 300.00164 * 10 8 6 14 14 C 1.34779 * 120.00050 * 90.00049 * 4 3 2 15 15 O 1.21273 * 120.00093 * 180.02562 * 14 4 3 16 16 C 1.50706 * 119.99767 * 359.97438 * 14 4 3 17 17 C 1.53000 * 109.46735 * 180.02562 * 16 14 4 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 16 14 19 19 N 1.46500 * 109.47473 * 180.02562 * 18 17 16 20 20 C 1.33787 * 124.18130 * 269.70212 * 19 18 17 21 21 O 1.21543 * 123.76980 * 0.03590 * 20 19 18 22 22 N 1.34526 * 112.46277 * 179.86018 * 20 19 18 23 23 C 1.47319 * 106.61422 * 0.38417 * 22 20 19 24 24 C 1.53001 * 110.59511 * 241.24913 * 23 22 20 25 25 C 1.52998 * 110.72799 * 118.36939 * 23 22 20 26 26 C 1.34762 * 124.17541 * 89.99857 * 19 18 17 27 27 O 1.21233 * 127.16150 * 359.93270 * 26 19 18 28 28 H 1.08003 * 120.00263 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00460 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.00022 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47436 * 5.00330 * 3 2 1 32 32 H 1.09003 * 109.47454 * 245.00169 * 3 2 1 33 33 H 1.08998 * 109.47205 * 29.99486 * 5 4 3 34 34 H 1.08997 * 109.47416 * 150.00347 * 5 4 3 35 35 H 0.97001 * 120.00292 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46797 * 60.00350 * 16 14 4 37 37 H 1.08992 * 109.47518 * 300.00347 * 16 14 4 38 38 H 1.09002 * 109.47398 * 300.00410 * 17 16 14 39 39 H 1.09001 * 109.47194 * 60.00591 * 17 16 14 40 40 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 41 41 H 1.08998 * 109.47533 * 59.99948 * 18 17 16 42 42 H 0.96989 * 126.69257 * 180.19426 * 22 20 19 43 43 H 1.08998 * 109.46741 * 174.17357 * 24 23 22 44 44 H 1.08992 * 109.47162 * 294.17434 * 24 23 22 45 45 H 1.09002 * 109.47073 * 54.17423 * 24 23 22 46 46 H 1.09003 * 109.46873 * 305.74194 * 25 23 22 47 47 H 1.08993 * 109.47143 * 65.74553 * 25 23 22 48 48 H 1.09003 * 109.46777 * 185.74951 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3034 3.8370 1.6366 8 6 2.5185 4.0666 3.6083 9 7 1.9591 3.4658 4.6358 10 14 2.8717 5.8996 3.6770 11 1 2.1358 6.5867 2.5854 12 1 2.4299 6.4401 4.9877 13 1 4.3295 6.1293 3.5123 14 6 4.2497 0.8662 0.9823 15 8 5.0197 0.8879 1.9190 16 6 4.6969 0.3174 -0.3482 17 6 6.1530 -0.1411 -0.2472 18 6 6.6072 -0.6977 -1.5981 19 7 8.0014 -1.1373 -1.5014 20 6 9.0558 -0.3552 -1.7590 21 8 8.9668 0.8076 -2.1013 22 7 10.2256 -0.9984 -1.5933 23 6 9.8953 -2.3747 -1.1844 24 6 10.4691 -2.6767 0.2015 25 6 10.4133 -3.3837 -2.2112 26 6 8.3800 -2.3813 -1.1474 27 8 7.6588 -3.3120 -0.8587 28 1 -0.5401 0.9353 0.0004 29 1 -0.5401 -0.9352 -0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0896 32 1 2.6212 1.4027 -0.9314 33 1 1.4888 1.6966 2.5459 34 1 3.0990 1.3602 3.2259 35 1 1.7295 3.9745 5.4291 36 1 4.6119 1.0939 -1.1085 37 1 4.0678 -0.5295 -0.6219 38 1 6.7825 0.7055 0.0267 39 1 6.2376 -0.9177 0.5130 40 1 5.9779 -1.5443 -1.8724 41 1 6.5228 0.0791 -2.3581 42 1 11.1132 -0.6290 -1.7211 43 1 10.1282 -3.6586 0.5297 44 1 11.5579 -2.6672 0.1539 45 1 10.1297 -1.9193 0.9081 46 1 10.0346 -3.1232 -3.1996 47 1 11.5030 -3.3636 -2.2226 48 1 10.0710 -4.3832 -1.9429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292236011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:52 Heat of formation + Delta-G solvation = -64.650265 kcal Electronic energy + Delta-G solvation = -29480.866467 eV Core-core repulsion = 25344.297809 eV Total energy + Delta-G solvation = -4136.568658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.79148 -39.15254 -38.84916 -37.01904 -36.08742 -35.59437 -33.46322 -32.96603 -32.02657 -31.60276 -28.49090 -28.03856 -26.96645 -25.39478 -24.51992 -23.48187 -22.13045 -21.41622 -20.53744 -19.90977 -18.43918 -18.11444 -16.97864 -16.72151 -16.45987 -16.21702 -15.99967 -15.67991 -15.42650 -15.28094 -14.81413 -14.53204 -14.41381 -14.17141 -13.93022 -13.75438 -13.13653 -12.97461 -12.89273 -12.75784 -12.74691 -12.39614 -12.32617 -12.07567 -11.76094 -11.65698 -11.59148 -11.22980 -11.03541 -10.94957 -10.88276 -10.70996 -10.54908 -10.35604 -10.16380 -9.99975 -9.80698 -9.62658 -9.16833 -8.87439 -8.40187 -7.65586 -6.01234 -4.05955 1.35648 1.94209 2.46830 2.76260 2.79219 3.34088 3.38302 3.40339 3.47846 3.55056 4.02244 4.07342 4.27343 4.47275 4.68087 4.86192 4.96619 4.99703 5.02272 5.05324 5.14298 5.17719 5.23312 5.29676 5.32545 5.40234 5.43293 5.45912 5.49477 5.59976 5.62308 5.64335 5.84501 6.03148 6.13702 6.23058 6.35727 6.46975 6.80373 6.81060 6.93333 7.11012 7.12541 7.48359 7.58486 7.88262 7.95297 8.26841 8.44560 8.93224 9.12574 9.59015 11.06847 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013220 B = 0.002632 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.425458 B =10637.290898 C =11738.124099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.168 4.168 3 C 0.136 3.864 4 N -0.595 5.595 5 C 0.247 3.753 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.506 3.494 15 O -0.540 6.540 16 C -0.137 4.137 17 C -0.119 4.119 18 C 0.117 3.883 19 N -0.573 5.573 20 C 0.702 3.298 21 O -0.537 6.537 22 N -0.723 5.723 23 C 0.116 3.884 24 C -0.149 4.149 25 C -0.146 4.146 26 C 0.529 3.471 27 O -0.461 6.461 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.032 0.968 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.438 0.562 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.373 -15.173 -16.885 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.187 4.187 3 C 0.012 3.988 4 N -0.326 5.326 5 C 0.128 3.872 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.292 3.708 15 O -0.418 6.418 16 C -0.178 4.178 17 C -0.158 4.158 18 C -0.003 4.003 19 N -0.319 5.319 20 C 0.403 3.597 21 O -0.410 6.410 22 N -0.388 5.388 23 C 0.026 3.974 24 C -0.207 4.207 25 C -0.204 4.204 26 C 0.315 3.685 27 O -0.330 6.330 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.283 0.717 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.130 -14.967 -16.201 25.669 hybrid contribution 0.403 1.227 0.082 1.294 sum 13.533 -13.740 -16.119 25.135 Atomic orbital electron populations 1.23814 0.95872 1.01731 1.00693 1.23436 0.96395 0.99068 0.99801 1.20586 0.93138 0.95272 0.89813 1.48227 1.10530 1.60240 1.13559 1.19255 0.95339 0.93713 0.78866 1.21407 1.40495 0.93369 1.01237 0.92519 1.24930 0.95077 0.98733 0.95343 1.69926 1.42058 1.36239 1.05197 0.86570 0.78860 0.84947 0.77118 1.20253 1.21197 1.20164 1.20263 0.82317 0.78607 0.89586 1.90670 1.52561 1.56422 1.42149 1.21601 0.96538 1.02032 0.97587 1.21647 0.96007 1.02400 0.95707 1.21829 0.77177 1.01410 0.99926 1.46412 1.09135 1.13027 1.63338 1.15892 0.81146 0.84618 0.78070 1.91044 1.85176 1.13643 1.51124 1.45687 1.07994 1.11684 1.73465 1.21489 0.92664 0.84625 0.98645 1.22021 1.02085 1.03945 0.92641 1.21997 1.02520 0.98310 0.97571 1.20789 0.90451 0.82136 0.75115 1.90805 1.60639 1.37510 1.44042 0.88309 0.88820 0.87776 0.89519 0.90681 0.95027 0.93963 0.92698 0.89053 0.89307 0.90272 0.90688 0.88664 0.88354 0.71746 0.89681 0.90221 0.91011 0.91402 0.90227 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 14.32 29.02 0.42 -1.97 16 2 C -0.17 -2.37 9.74 -36.02 -0.35 -2.72 16 3 C 0.14 2.20 5.65 -5.19 -0.03 2.17 16 4 N -0.59 -12.67 2.44 -176.43 -0.43 -13.10 16 5 C 0.25 6.59 5.16 -5.19 -0.03 6.56 16 6 C -0.53 -15.16 9.39 -34.44 -0.32 -15.49 16 7 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 10 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.51 10.57 7.67 -10.98 -0.08 10.48 16 15 O -0.54 -13.84 15.56 5.56 0.09 -13.76 16 16 C -0.14 -1.97 4.25 -27.88 -0.12 -2.09 16 17 C -0.12 -1.71 4.83 -26.73 -0.13 -1.83 16 18 C 0.12 1.31 5.70 -4.04 -0.02 1.29 16 19 N -0.57 -6.55 2.60 -120.73 -0.31 -6.87 16 20 C 0.70 8.28 8.62 -88.02 -0.76 7.52 16 21 O -0.54 -8.28 17.48 5.33 0.09 -8.19 16 22 N -0.72 -5.53 5.91 -52.93 -0.31 -5.85 16 23 C 0.12 0.82 1.37 -132.09 -0.18 0.64 16 24 C -0.15 -0.87 8.98 37.16 0.33 -0.54 16 25 C -0.15 -0.66 8.99 37.16 0.33 -0.33 16 26 C 0.53 5.63 6.98 -10.56 -0.07 5.55 16 27 O -0.46 -5.96 17.76 5.60 0.10 -5.86 16 28 H 0.10 1.27 7.84 -52.48 -0.41 0.86 16 29 H 0.09 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.10 1.38 7.83 -52.49 -0.41 0.96 16 31 H 0.09 1.47 7.72 -51.93 -0.40 1.07 16 32 H 0.08 0.99 6.44 -51.93 -0.33 0.66 16 33 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.09 1.14 7.40 -51.93 -0.38 0.76 16 37 H 0.09 1.05 7.77 -51.93 -0.40 0.64 16 38 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 39 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 40 H 0.10 0.91 8.00 -51.93 -0.42 0.50 16 41 H 0.10 1.03 7.85 -51.93 -0.41 0.62 16 42 H 0.44 2.25 8.96 -40.82 -0.37 1.89 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 48 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 407.56 15.07 6.14 6.14 Total: -1.00 -37.54 407.56 -7.72 -45.26 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.69 Total: 0.37 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: -1.11 Total: 10.92 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.32 Total: -52.12 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: 0.28 Total: -27.81 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.54 -7.72 -45.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292236011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.385 kcal (2) G-P(sol) polarization free energy of solvation -37.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds