Wall clock time and date at job start Tue Mar 31 2020 20:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99803 * 2 1 4 4 N 1.46505 * 109.46926 * 125.00376 * 3 2 1 5 5 C 1.46496 * 119.99896 * 270.00109 * 4 3 2 6 6 C 1.50705 * 109.47066 * 269.99622 * 5 4 3 7 7 H 1.08001 * 119.99987 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00127 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00059 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00144 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47052 * 60.00305 * 10 8 6 12 12 H 1.48498 * 109.47378 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47029 * 300.00164 * 10 8 6 14 14 C 1.34779 * 120.00050 * 90.00049 * 4 3 2 15 15 O 1.21273 * 120.00093 * 180.02562 * 14 4 3 16 16 C 1.50706 * 119.99767 * 359.97438 * 14 4 3 17 17 C 1.53000 * 109.46735 * 180.02562 * 16 14 4 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 16 14 19 19 N 1.46500 * 109.47473 * 180.02562 * 18 17 16 20 20 C 1.33787 * 124.18130 * 269.70212 * 19 18 17 21 21 O 1.21543 * 123.76980 * 0.03590 * 20 19 18 22 22 N 1.34526 * 112.46277 * 179.86018 * 20 19 18 23 23 C 1.47319 * 106.61422 * 0.38417 * 22 20 19 24 24 C 1.53001 * 110.59511 * 241.24913 * 23 22 20 25 25 C 1.52998 * 110.72799 * 118.36939 * 23 22 20 26 26 C 1.34762 * 124.17541 * 89.99857 * 19 18 17 27 27 O 1.21233 * 127.16150 * 359.93270 * 26 19 18 28 28 H 1.08003 * 120.00263 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00460 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.00022 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47436 * 5.00330 * 3 2 1 32 32 H 1.09003 * 109.47454 * 245.00169 * 3 2 1 33 33 H 1.08998 * 109.47205 * 29.99486 * 5 4 3 34 34 H 1.08997 * 109.47416 * 150.00347 * 5 4 3 35 35 H 0.97001 * 120.00292 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46797 * 60.00350 * 16 14 4 37 37 H 1.08992 * 109.47518 * 300.00347 * 16 14 4 38 38 H 1.09002 * 109.47398 * 300.00410 * 17 16 14 39 39 H 1.09001 * 109.47194 * 60.00591 * 17 16 14 40 40 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 41 41 H 1.08998 * 109.47533 * 59.99948 * 18 17 16 42 42 H 0.96989 * 126.69257 * 180.19426 * 22 20 19 43 43 H 1.08998 * 109.46741 * 174.17357 * 24 23 22 44 44 H 1.08992 * 109.47162 * 294.17434 * 24 23 22 45 45 H 1.09002 * 109.47073 * 54.17423 * 24 23 22 46 46 H 1.09003 * 109.46873 * 305.74194 * 25 23 22 47 47 H 1.08993 * 109.47143 * 65.74553 * 25 23 22 48 48 H 1.09003 * 109.46777 * 185.74951 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3034 3.8370 1.6366 8 6 2.5185 4.0666 3.6083 9 7 1.9591 3.4658 4.6358 10 14 2.8717 5.8996 3.6770 11 1 2.1358 6.5867 2.5854 12 1 2.4299 6.4401 4.9877 13 1 4.3295 6.1293 3.5123 14 6 4.2497 0.8662 0.9823 15 8 5.0197 0.8879 1.9190 16 6 4.6969 0.3174 -0.3482 17 6 6.1530 -0.1411 -0.2472 18 6 6.6072 -0.6977 -1.5981 19 7 8.0014 -1.1373 -1.5014 20 6 9.0558 -0.3552 -1.7590 21 8 8.9668 0.8076 -2.1013 22 7 10.2256 -0.9984 -1.5933 23 6 9.8953 -2.3747 -1.1844 24 6 10.4691 -2.6767 0.2015 25 6 10.4133 -3.3837 -2.2112 26 6 8.3800 -2.3813 -1.1474 27 8 7.6588 -3.3120 -0.8587 28 1 -0.5401 0.9353 0.0004 29 1 -0.5401 -0.9352 -0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0896 32 1 2.6212 1.4027 -0.9314 33 1 1.4888 1.6966 2.5459 34 1 3.0990 1.3602 3.2259 35 1 1.7295 3.9745 5.4291 36 1 4.6119 1.0939 -1.1085 37 1 4.0678 -0.5295 -0.6219 38 1 6.7825 0.7055 0.0267 39 1 6.2376 -0.9177 0.5130 40 1 5.9779 -1.5443 -1.8724 41 1 6.5228 0.0791 -2.3581 42 1 11.1132 -0.6290 -1.7211 43 1 10.1282 -3.6586 0.5297 44 1 11.5579 -2.6672 0.1539 45 1 10.1297 -1.9193 0.9081 46 1 10.0346 -3.1232 -3.1996 47 1 11.5030 -3.3636 -2.2226 48 1 10.0710 -4.3832 -1.9429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292236011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:51 Heat of formation + Delta-G solvation = -91.393550 kcal Electronic energy + Delta-G solvation = -29482.026143 eV Core-core repulsion = 25344.297809 eV Total energy + Delta-G solvation = -4137.728334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.60976 -40.80363 -39.77154 -37.83326 -37.33029 -36.92058 -35.19566 -34.25522 -33.65778 -32.32285 -30.13807 -28.45149 -28.40232 -26.85818 -25.56533 -24.93488 -23.49246 -22.34614 -21.37471 -21.10773 -19.89016 -19.04363 -18.65552 -17.95867 -17.81251 -17.33631 -17.21088 -16.76683 -16.72480 -16.55016 -16.13662 -15.71945 -15.46731 -15.32458 -15.18182 -14.60308 -14.37375 -14.28275 -14.12070 -13.68931 -13.65754 -13.31557 -13.28693 -13.12891 -13.08156 -12.95841 -12.87069 -12.75830 -12.57473 -12.56412 -12.24518 -12.19314 -11.90621 -11.87223 -11.70060 -11.19331 -10.99521 -10.66353 -10.62506 -10.51406 -10.29404 -9.47029 -8.23956 -6.38965 0.51834 1.13140 1.33852 1.35594 1.38926 1.46233 1.83202 1.88137 2.10578 2.33450 2.51002 2.84257 3.05398 3.51798 3.60124 3.76795 3.79777 3.85864 4.05654 4.15936 4.21301 4.29598 4.37514 4.40970 4.52473 4.59628 4.61308 4.65421 4.65786 4.73599 4.82337 4.87646 5.00028 5.03419 5.08448 5.09836 5.16652 5.18671 5.21761 5.51442 5.73162 5.76393 5.78924 5.97216 5.97439 6.05163 6.31201 6.68019 6.77899 7.05877 7.26684 7.47454 8.83133 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013220 B = 0.002632 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.425458 B =10637.290898 C =11738.124099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.182 4.182 3 C 0.131 3.869 4 N -0.599 5.599 5 C 0.264 3.736 6 C -0.544 4.544 7 H 0.053 0.947 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.967 3.033 11 H -0.259 1.259 12 H -0.277 1.277 13 H -0.279 1.279 14 C 0.493 3.507 15 O -0.601 6.601 16 C -0.120 4.120 17 C -0.109 4.109 18 C 0.120 3.880 19 N -0.580 5.580 20 C 0.697 3.303 21 O -0.579 6.579 22 N -0.703 5.703 23 C 0.122 3.878 24 C -0.147 4.147 25 C -0.140 4.140 26 C 0.521 3.479 27 O -0.488 6.488 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.021 0.979 34 H -0.007 1.007 35 H 0.267 0.733 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.046 0.954 39 H 0.052 0.948 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.451 0.549 43 H 0.088 0.912 44 H 0.111 0.889 45 H 0.050 0.950 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.120 -15.833 -19.394 28.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.201 4.201 3 C 0.010 3.990 4 N -0.329 5.329 5 C 0.143 3.857 6 C -0.582 4.582 7 H 0.071 0.929 8 C -0.192 4.192 9 N -0.568 5.568 10 Si 0.791 3.209 11 H -0.183 1.183 12 H -0.202 1.202 13 H -0.205 1.205 14 C 0.283 3.717 15 O -0.483 6.483 16 C -0.160 4.160 17 C -0.148 4.148 18 C 0.000 4.000 19 N -0.325 5.325 20 C 0.397 3.603 21 O -0.456 6.456 22 N -0.368 5.368 23 C 0.033 3.967 24 C -0.205 4.205 25 C -0.198 4.198 26 C 0.309 3.691 27 O -0.358 6.358 28 H 0.115 0.885 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.039 0.961 34 H 0.011 0.989 35 H 0.076 0.924 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.298 0.702 43 H 0.107 0.893 44 H 0.129 0.871 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.127 0.873 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.884 -15.664 -18.760 28.108 hybrid contribution 0.136 1.367 0.909 1.647 sum 14.020 -14.296 -17.852 26.826 Atomic orbital electron populations 1.24041 0.95647 1.02775 0.98537 1.23351 0.96757 0.98374 1.01663 1.20871 0.92705 0.96280 0.89185 1.48235 1.11847 1.59763 1.13084 1.18664 0.93749 0.92665 0.80664 1.21691 1.40611 0.94486 1.01447 0.92857 1.25867 0.94638 1.03822 0.94838 1.70049 1.42787 1.38210 1.05792 0.85483 0.78450 0.78984 0.77996 1.18300 1.20207 1.20475 1.21436 0.81382 0.77543 0.91349 1.90635 1.54129 1.58773 1.44763 1.21592 0.96726 1.03867 0.93846 1.21498 0.95679 1.00502 0.97140 1.21804 0.77765 1.02578 0.97874 1.46515 1.09240 1.13483 1.63277 1.16077 0.82103 0.84191 0.77883 1.91010 1.85861 1.15395 1.53310 1.45644 1.07528 1.11715 1.71922 1.21663 0.90055 0.84683 1.00340 1.22067 1.03992 1.03354 0.91106 1.22033 1.04247 0.97302 0.96240 1.21439 0.92121 0.81384 0.74108 1.90785 1.61739 1.38123 1.45159 0.88499 0.86590 0.86455 0.90714 0.86974 0.96128 0.98875 0.92388 0.86097 0.85559 0.93558 0.92907 0.86408 0.87161 0.70150 0.89299 0.87065 0.93118 0.91626 0.87346 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 14.32 67.78 0.97 -3.16 16 2 C -0.18 -4.82 9.74 25.65 0.25 -4.57 16 3 C 0.13 4.11 5.65 85.63 0.48 4.59 16 4 N -0.60 -26.06 2.44 -830.49 -2.03 -28.08 16 5 C 0.26 14.77 5.16 85.64 0.44 15.21 16 6 C -0.54 -32.32 9.39 25.60 0.24 -32.08 16 7 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 8 C 0.01 0.43 5.46 84.65 0.46 0.89 16 9 N -0.93 -57.67 13.29 21.44 0.28 -57.38 16 10 Si 0.97 46.13 29.54 68.60 2.03 48.16 16 11 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 14 C 0.49 21.13 7.67 87.66 0.67 21.80 16 15 O -0.60 -32.68 15.56 -3.01 -0.05 -32.73 16 16 C -0.12 -3.32 4.25 29.85 0.13 -3.19 16 17 C -0.11 -3.17 4.83 30.59 0.15 -3.02 16 18 C 0.12 2.57 5.70 86.38 0.49 3.07 16 19 N -0.58 -12.97 2.60 -773.14 -2.01 -14.98 16 20 C 0.70 16.13 8.62 179.44 1.55 17.68 16 21 O -0.58 -17.96 17.48 -3.85 -0.07 -18.03 16 22 N -0.70 -9.74 5.91 -439.80 -2.60 -12.34 16 23 C 0.12 1.51 1.37 2.98 0.00 1.51 16 24 C -0.15 -1.47 8.98 71.98 0.65 -0.83 16 25 C -0.14 -0.87 8.99 71.98 0.65 -0.22 16 26 C 0.52 10.69 6.98 87.94 0.61 11.30 16 27 O -0.49 -12.32 17.76 -2.88 -0.05 -12.37 16 28 H 0.10 2.35 7.84 -2.91 -0.02 2.33 16 29 H 0.12 2.28 8.06 -2.91 -0.02 2.25 16 30 H 0.12 2.80 7.83 -2.91 -0.02 2.78 16 31 H 0.07 2.51 7.72 -2.39 -0.02 2.49 16 32 H 0.11 2.63 6.44 -2.39 -0.02 2.62 16 33 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 34 H -0.01 -0.45 7.42 -2.39 -0.02 -0.46 16 35 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.12 2.68 7.40 -2.39 -0.02 2.66 16 37 H 0.13 2.59 7.77 -2.39 -0.02 2.57 16 38 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 39 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 40 H 0.12 1.99 8.00 -2.39 -0.02 1.97 16 41 H 0.11 2.12 7.85 -2.39 -0.02 2.10 16 42 H 0.45 3.76 8.96 -92.72 -0.83 2.92 16 43 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 48 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -88.01 407.56 3.38 -84.63 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.13 Total: 14.14 kcal Atomic # 6 Polarization: 21.24 SS G_CDS: 7.75 Total: 28.98 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -6.35 Total: -112.78 kcal Atomic # 8 Polarization: -62.96 SS G_CDS: -0.17 Total: -63.13 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -88.01 3.38 -84.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292236011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.768 kcal (2) G-P(sol) polarization free energy of solvation -88.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds