Wall clock time and date at job start Tue Mar 31 2020 21:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47440 * 2 1 4 4 C 1.53004 * 109.45570 * 184.99791 * 3 2 1 5 5 C 1.53095 * 109.41417 * 179.56121 * 4 3 2 6 6 C 1.52480 * 109.52004 * 59.17312 * 5 4 3 7 7 C 1.52476 * 110.72394 * 301.25307 * 6 5 4 8 8 C 1.52999 * 109.45383 * 64.90378 * 3 2 1 9 9 N 1.46856 * 110.48764 * 64.00131 * 6 5 4 10 10 C 1.34672 * 106.41671 * 118.55801 * 9 6 5 11 11 O 1.21532 * 123.79219 * 180.02562 * 10 9 6 12 12 N 1.33875 * 112.42064 * 359.97438 * 10 9 6 13 13 C 1.46501 * 124.19093 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47308 * 89.97641 * 13 12 10 15 15 O 1.21288 * 119.99613 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00310 * 179.97438 * 14 13 12 17 17 C 1.46504 * 120.00240 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47181 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99753 * 0.02562 * 18 17 16 20 20 C 1.37866 * 120.00029 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00194 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00120 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46798 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47281 * 120.00283 * 22 20 18 25 25 H 1.48506 * 109.46990 * 240.00355 * 22 20 18 26 26 C 1.34908 * 111.61051 * 359.97438 * 12 10 9 27 27 O 1.21240 * 127.25535 * 180.02562 * 26 12 10 28 28 H 1.08992 * 109.47360 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47209 * 300.00220 * 1 2 3 30 30 H 1.09006 * 109.46796 * 59.99708 * 1 2 3 31 31 H 1.08998 * 109.47209 * 239.99780 * 2 1 3 32 32 H 1.09005 * 109.47065 * 119.99814 * 2 1 3 33 33 H 1.09000 * 109.43775 * 304.94904 * 3 2 1 34 34 H 1.09000 * 109.47852 * 59.58568 * 4 3 2 35 35 H 1.08993 * 109.48323 * 299.54673 * 4 3 2 36 36 H 1.08998 * 109.46312 * 299.16090 * 5 4 3 37 37 H 1.08997 * 109.46259 * 179.18575 * 5 4 3 38 38 H 1.09008 * 109.45754 * 178.76004 * 7 6 5 39 39 H 1.08998 * 109.46494 * 298.72074 * 7 6 5 40 40 H 1.08993 * 109.47813 * 300.41356 * 8 3 2 41 41 H 1.08997 * 109.47810 * 60.45508 * 8 3 2 42 42 H 0.96996 * 126.78981 * 298.51614 * 9 6 5 43 43 H 1.08996 * 109.46783 * 209.97332 * 13 12 10 44 44 H 1.09003 * 109.47333 * 329.97390 * 13 12 10 45 45 H 0.96998 * 119.99681 * 359.97438 * 16 14 13 46 46 H 1.09000 * 109.46890 * 300.00310 * 17 16 14 47 47 H 1.08998 * 109.46561 * 60.00107 * 17 16 14 48 48 H 0.96999 * 120.00410 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4438 -0.1257 5 6 4.0733 2.8878 -0.1366 6 6 3.6519 3.5861 1.1517 7 6 2.1345 3.5733 1.3009 8 6 1.6330 2.1269 1.3065 9 7 4.2880 2.9504 2.3127 10 6 5.0523 3.8954 2.8928 11 8 5.7234 3.7050 3.8880 12 7 4.9905 5.0679 2.2496 13 6 5.7200 6.2707 2.6587 14 6 7.0680 6.2941 1.9854 15 8 7.3881 5.3943 1.2378 16 7 7.9179 7.3149 2.2139 17 6 9.2286 7.3373 1.5598 18 6 9.9784 8.5753 1.9795 19 1 9.5241 9.2752 2.6653 20 6 11.2445 8.8139 1.4889 21 7 11.7978 7.9614 0.6542 22 14 12.1742 10.3482 2.0097 23 1 11.3379 11.1391 2.9479 24 1 13.4386 9.9563 2.6828 25 1 12.4849 11.1692 0.8119 26 6 4.1742 5.0040 1.1774 27 8 3.9139 5.8963 0.3990 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6058 1.9808 -0.8425 34 1 3.8536 0.9499 -1.0535 35 1 3.9998 0.9117 0.7202 36 1 3.6497 3.4156 -0.9910 37 1 5.1607 2.8894 -0.2116 38 1 1.8576 4.0573 2.2375 39 1 1.6830 4.1111 0.4672 40 1 0.5470 2.1191 1.3978 41 1 2.0728 1.5930 2.1488 42 1 4.1788 2.0318 2.6044 43 1 5.1535 7.1555 2.3683 44 1 5.8542 6.2641 3.7404 45 1 7.6617 8.0347 2.8115 46 1 9.7951 6.4527 1.8509 47 1 9.0946 7.3433 0.4781 48 1 12.6885 8.1295 0.3088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331482292.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:35 Heat of formation + Delta-G solvation = -103.859378 kcal Electronic energy + Delta-G solvation = -30084.409740 eV Core-core repulsion = 25946.140847 eV Total energy + Delta-G solvation = -4138.268893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.80997 -39.36079 -38.65737 -38.38333 -36.06588 -34.98045 -34.18437 -32.62166 -32.33797 -31.38393 -29.35088 -28.85505 -26.77993 -24.82182 -23.48592 -23.07720 -22.71423 -21.36960 -20.75330 -20.15551 -19.60512 -18.06910 -17.59059 -16.79139 -16.46955 -15.89594 -15.71958 -15.50345 -15.40341 -15.08529 -14.83289 -14.64479 -14.54841 -14.17865 -14.08441 -14.01943 -13.72031 -13.39958 -12.88289 -12.80352 -12.53359 -12.49011 -12.34674 -12.01784 -11.98266 -11.62600 -11.55632 -11.38019 -11.11038 -10.96416 -10.90701 -10.85926 -10.69651 -10.59063 -10.36077 -10.23080 -10.02361 -9.55497 -9.39414 -9.00605 -8.75934 -7.94713 -6.16975 -4.24094 1.59784 2.08261 2.96546 3.03358 3.21786 3.24185 3.31019 3.34256 3.74520 4.04713 4.14295 4.16786 4.35859 4.36837 4.52592 4.60369 4.83825 4.91596 4.94276 5.00991 5.03119 5.12970 5.16799 5.19376 5.21575 5.28368 5.30648 5.43460 5.50652 5.55879 5.56657 5.65423 5.67505 5.68968 5.70140 5.80166 5.82784 5.96838 6.05863 6.68053 7.00718 7.25999 7.32852 7.36550 7.49838 7.63736 7.95063 8.09785 8.53850 8.73766 8.99929 9.42175 10.93294 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.028203 B = 0.002260 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.557584 B =12388.593130 C =12574.008572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.111 4.111 5 C -0.116 4.116 6 C 0.130 3.870 7 C -0.113 4.113 8 C -0.112 4.112 9 N -0.717 5.717 10 C 0.709 3.291 11 O -0.539 6.539 12 N -0.558 5.558 13 C 0.096 3.904 14 C 0.487 3.513 15 O -0.546 6.546 16 N -0.705 5.705 17 C 0.251 3.749 18 C -0.543 4.543 19 H 0.065 0.935 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.536 3.464 27 O -0.461 6.461 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.437 0.563 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.393 0.607 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.387 -13.639 1.037 28.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.111 4.111 4 C -0.148 4.148 5 C -0.155 4.155 6 C 0.039 3.961 7 C -0.151 4.151 8 C -0.149 4.149 9 N -0.382 5.382 10 C 0.410 3.590 11 O -0.412 6.412 12 N -0.303 5.303 13 C -0.029 4.029 14 C 0.269 3.731 15 O -0.425 6.425 16 N -0.354 5.354 17 C 0.130 3.870 18 C -0.581 4.581 19 H 0.083 0.917 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.323 3.677 27 O -0.330 6.330 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.282 0.718 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.225 0.775 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.677 -13.810 0.513 28.284 hybrid contribution 0.637 0.816 0.619 1.206 sum -24.040 -12.994 1.132 27.351 Atomic orbital electron populations 1.21827 0.95885 1.01539 1.01951 1.21561 0.95898 0.96092 1.02159 1.21284 0.95415 0.96175 0.98223 1.21581 0.95008 0.95437 1.02819 1.21698 1.02826 0.96339 0.94587 1.21024 0.95528 0.90315 0.89233 1.21689 0.90681 0.98875 1.03901 1.21628 1.01371 0.94135 0.97799 1.45491 1.49411 1.13675 1.29614 1.15824 0.79983 0.80497 0.82687 1.91013 1.43767 1.81073 1.25317 1.45876 1.43543 1.12556 1.28295 1.21585 0.92581 0.86399 1.02384 1.20513 0.86127 0.83474 0.82963 1.90676 1.77029 1.37021 1.37758 1.46379 1.18668 1.22829 1.47528 1.19148 0.76987 0.97626 0.93228 1.21252 1.01046 1.06837 1.29002 0.91700 1.24962 0.97254 0.97136 0.94736 1.69986 1.15817 1.35725 1.30725 0.86336 0.79676 0.82315 0.78433 1.19587 1.20788 1.20799 1.20647 0.77666 0.89885 0.79537 1.90793 1.58577 1.43635 1.39986 0.92934 0.92480 0.92719 0.91852 0.91943 0.90554 0.90761 0.91645 0.89308 0.89972 0.90704 0.89246 0.90654 0.91655 0.71844 0.86173 0.85942 0.77457 0.95403 0.95425 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.67 37.15 0.36 -0.33 16 2 C -0.12 -0.57 5.40 -26.73 -0.14 -0.72 16 3 C -0.09 -0.49 2.17 -90.62 -0.20 -0.69 16 4 C -0.11 -0.73 5.09 -26.68 -0.14 -0.87 16 5 C -0.12 -1.09 4.98 -26.95 -0.13 -1.23 16 6 C 0.13 1.30 0.84 -133.10 -0.11 1.19 16 7 C -0.11 -0.81 4.99 -26.95 -0.13 -0.94 16 8 C -0.11 -0.58 4.86 -26.68 -0.13 -0.71 16 9 N -0.72 -7.52 5.23 -53.87 -0.28 -7.80 16 10 C 0.71 10.61 8.63 -87.82 -0.76 9.85 16 11 O -0.54 -9.86 17.49 5.34 0.09 -9.76 16 12 N -0.56 -8.41 2.10 -122.10 -0.26 -8.67 16 13 C 0.10 1.44 6.19 -5.19 -0.03 1.41 16 14 C 0.49 10.05 7.90 -10.99 -0.09 9.97 16 15 O -0.55 -13.58 16.43 5.55 0.09 -13.49 16 16 N -0.71 -15.05 5.55 -61.47 -0.34 -15.39 16 17 C 0.25 6.75 5.43 -5.19 -0.03 6.72 16 18 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 19 H 0.06 1.65 7.60 -52.48 -0.40 1.25 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 22 Si 0.91 21.04 29.54 -169.99 -5.02 16.01 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.54 7.54 6.94 -10.72 -0.07 7.47 16 27 O -0.46 -7.50 17.77 5.59 0.10 -7.40 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.24 6.55 -51.93 -0.34 -0.10 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.42 7.33 -51.93 -0.38 0.04 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.33 6.54 -51.93 -0.34 -0.01 16 41 H 0.06 0.32 7.33 -51.93 -0.38 -0.06 16 42 H 0.44 3.50 7.71 -40.82 -0.31 3.18 16 43 H 0.12 1.48 8.01 -51.93 -0.42 1.07 16 44 H 0.12 1.59 7.86 -51.93 -0.41 1.18 16 45 H 0.39 6.98 8.32 -40.82 -0.34 6.64 16 46 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 389.79 15.07 5.87 5.87 Total: -1.00 -36.25 389.79 -8.56 -44.81 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -7.53 Total: 3.83 kcal Atomic # 6 Polarization: 19.63 SS G_CDS: -2.02 Total: 17.61 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.14 Total: -57.48 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: 0.28 Total: -30.65 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.25 -8.56 -44.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331482292.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.050 kcal (2) G-P(sol) polarization free energy of solvation -36.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds