Wall clock time and date at job start Tue Mar 31 2020 21:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47440 * 2 1 4 4 C 1.53004 * 109.45570 * 184.99791 * 3 2 1 5 5 C 1.53095 * 109.41417 * 179.56121 * 4 3 2 6 6 C 1.52480 * 109.52004 * 59.17312 * 5 4 3 7 7 C 1.52476 * 110.72394 * 301.25307 * 6 5 4 8 8 C 1.52999 * 109.45383 * 64.90378 * 3 2 1 9 9 N 1.46856 * 110.48764 * 64.00131 * 6 5 4 10 10 C 1.34672 * 106.41671 * 118.55801 * 9 6 5 11 11 O 1.21532 * 123.79219 * 180.02562 * 10 9 6 12 12 N 1.33875 * 112.42064 * 359.97438 * 10 9 6 13 13 C 1.46501 * 124.19093 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47308 * 89.97641 * 13 12 10 15 15 O 1.21288 * 119.99613 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00310 * 179.97438 * 14 13 12 17 17 C 1.46504 * 120.00240 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47181 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99753 * 0.02562 * 18 17 16 20 20 C 1.37866 * 120.00029 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00194 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00120 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46798 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47281 * 120.00283 * 22 20 18 25 25 H 1.48506 * 109.46990 * 240.00355 * 22 20 18 26 26 C 1.34908 * 111.61051 * 359.97438 * 12 10 9 27 27 O 1.21240 * 127.25535 * 180.02562 * 26 12 10 28 28 H 1.08992 * 109.47360 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47209 * 300.00220 * 1 2 3 30 30 H 1.09006 * 109.46796 * 59.99708 * 1 2 3 31 31 H 1.08998 * 109.47209 * 239.99780 * 2 1 3 32 32 H 1.09005 * 109.47065 * 119.99814 * 2 1 3 33 33 H 1.09000 * 109.43775 * 304.94904 * 3 2 1 34 34 H 1.09000 * 109.47852 * 59.58568 * 4 3 2 35 35 H 1.08993 * 109.48323 * 299.54673 * 4 3 2 36 36 H 1.08998 * 109.46312 * 299.16090 * 5 4 3 37 37 H 1.08997 * 109.46259 * 179.18575 * 5 4 3 38 38 H 1.09008 * 109.45754 * 178.76004 * 7 6 5 39 39 H 1.08998 * 109.46494 * 298.72074 * 7 6 5 40 40 H 1.08993 * 109.47813 * 300.41356 * 8 3 2 41 41 H 1.08997 * 109.47810 * 60.45508 * 8 3 2 42 42 H 0.96996 * 126.78981 * 298.51614 * 9 6 5 43 43 H 1.08996 * 109.46783 * 209.97332 * 13 12 10 44 44 H 1.09003 * 109.47333 * 329.97390 * 13 12 10 45 45 H 0.96998 * 119.99681 * 359.97438 * 16 14 13 46 46 H 1.09000 * 109.46890 * 300.00310 * 17 16 14 47 47 H 1.08998 * 109.46561 * 60.00107 * 17 16 14 48 48 H 0.96999 * 120.00410 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4438 -0.1257 5 6 4.0733 2.8878 -0.1366 6 6 3.6519 3.5861 1.1517 7 6 2.1345 3.5733 1.3009 8 6 1.6330 2.1269 1.3065 9 7 4.2880 2.9504 2.3127 10 6 5.0523 3.8954 2.8928 11 8 5.7234 3.7050 3.8880 12 7 4.9905 5.0679 2.2496 13 6 5.7200 6.2707 2.6587 14 6 7.0680 6.2941 1.9854 15 8 7.3881 5.3943 1.2378 16 7 7.9179 7.3149 2.2139 17 6 9.2286 7.3373 1.5598 18 6 9.9784 8.5753 1.9795 19 1 9.5241 9.2752 2.6653 20 6 11.2445 8.8139 1.4889 21 7 11.7978 7.9614 0.6542 22 14 12.1742 10.3482 2.0097 23 1 11.3379 11.1391 2.9479 24 1 13.4386 9.9563 2.6828 25 1 12.4849 11.1692 0.8119 26 6 4.1742 5.0040 1.1774 27 8 3.9139 5.8963 0.3990 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6058 1.9808 -0.8425 34 1 3.8536 0.9499 -1.0535 35 1 3.9998 0.9117 0.7202 36 1 3.6497 3.4156 -0.9910 37 1 5.1607 2.8894 -0.2116 38 1 1.8576 4.0573 2.2375 39 1 1.6830 4.1111 0.4672 40 1 0.5470 2.1191 1.3978 41 1 2.0728 1.5930 2.1488 42 1 4.1788 2.0318 2.6044 43 1 5.1535 7.1555 2.3683 44 1 5.8542 6.2641 3.7404 45 1 7.6617 8.0347 2.8115 46 1 9.7951 6.4527 1.8509 47 1 9.0946 7.3433 0.4781 48 1 12.6885 8.1295 0.3088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331482292.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:34 Heat of formation + Delta-G solvation = -130.343756 kcal Electronic energy + Delta-G solvation = -30085.558189 eV Core-core repulsion = 25946.140847 eV Total energy + Delta-G solvation = -4139.417342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.88170 -40.68235 -39.92383 -39.46458 -37.14770 -36.32678 -35.82606 -34.43906 -33.31895 -31.97764 -30.71946 -29.73891 -28.56569 -25.65818 -24.81124 -24.23167 -23.69997 -22.43972 -21.67956 -21.42454 -20.54350 -19.34637 -19.06963 -18.10131 -17.79033 -17.33749 -17.09032 -16.71162 -16.57606 -16.42063 -16.23297 -15.71088 -15.62134 -15.28315 -15.17532 -14.72668 -14.64844 -14.40745 -14.31943 -14.08242 -13.98521 -13.47106 -13.26027 -13.13016 -12.94534 -12.87664 -12.76472 -12.51281 -12.25015 -12.21031 -12.08008 -11.81606 -11.69790 -11.56930 -11.49492 -11.32889 -11.14225 -10.91195 -10.85435 -10.69041 -10.42864 -9.95531 -8.31982 -6.49052 0.47090 0.95368 1.42150 1.43492 1.54065 1.57202 1.79109 2.05686 2.30549 2.52296 2.79850 3.03074 3.38729 3.50542 3.73814 3.82253 3.84573 3.98868 4.05470 4.09754 4.25614 4.31365 4.39333 4.45048 4.47953 4.55039 4.70896 4.72185 4.83938 4.95850 4.98837 5.04142 5.12234 5.15145 5.17322 5.17915 5.26628 5.32996 5.37346 5.40348 5.57134 5.60439 5.63897 5.73098 5.79407 5.89314 6.23033 6.60578 6.73102 7.00221 7.18084 7.33802 8.80596 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.028203 B = 0.002260 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.557584 B =12388.593130 C =12574.008572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.087 4.087 4 C -0.105 4.105 5 C -0.115 4.115 6 C 0.137 3.863 7 C -0.107 4.107 8 C -0.107 4.107 9 N -0.694 5.694 10 C 0.703 3.297 11 O -0.577 6.577 12 N -0.566 5.566 13 C 0.104 3.896 14 C 0.481 3.519 15 O -0.595 6.595 16 N -0.698 5.698 17 C 0.268 3.732 18 C -0.556 4.556 19 H 0.088 0.912 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.988 3.012 23 H -0.251 1.251 24 H -0.279 1.279 25 H -0.279 1.279 26 C 0.527 3.473 27 O -0.487 6.487 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.450 0.550 43 H 0.154 0.846 44 H 0.149 0.851 45 H 0.413 0.587 46 H -0.014 1.014 47 H -0.012 1.012 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.629 -13.144 2.283 30.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.106 4.106 4 C -0.143 4.143 5 C -0.153 4.153 6 C 0.047 3.953 7 C -0.145 4.145 8 C -0.145 4.145 9 N -0.359 5.359 10 C 0.404 3.596 11 O -0.453 6.453 12 N -0.311 5.311 13 C -0.021 4.021 14 C 0.266 3.734 15 O -0.476 6.476 16 N -0.349 5.349 17 C 0.145 3.855 18 C -0.593 4.593 19 H 0.106 0.894 20 C -0.198 4.198 21 N -0.570 5.570 22 Si 0.811 3.189 23 H -0.174 1.174 24 H -0.205 1.205 25 H -0.204 1.204 26 C 0.316 3.684 27 O -0.357 6.357 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.298 0.702 43 H 0.171 0.829 44 H 0.167 0.833 45 H 0.249 0.751 46 H 0.004 0.996 47 H 0.006 0.994 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -26.996 -13.333 1.775 30.161 hybrid contribution 1.320 0.599 0.155 1.457 sum -25.676 -12.734 1.930 28.725 Atomic orbital electron populations 1.21826 0.95470 1.01715 1.02179 1.21526 0.96190 0.95414 1.02298 1.21243 0.94035 0.96819 0.98491 1.21575 0.96196 0.93155 1.03366 1.21701 1.00915 0.98418 0.94303 1.21168 0.97454 0.87598 0.89057 1.21730 0.87685 1.00588 1.04500 1.21645 1.02415 0.92531 0.97871 1.45413 1.47984 1.13626 1.28891 1.16018 0.80085 0.81017 0.82449 1.90984 1.45535 1.81703 1.27067 1.46053 1.43505 1.12728 1.28792 1.21636 0.89279 0.88020 1.03134 1.21553 0.87765 0.82019 0.82043 1.90649 1.78414 1.38685 1.39895 1.46081 1.17056 1.24101 1.47643 1.18567 0.79289 0.96341 0.91276 1.21653 1.01440 1.06960 1.29283 0.89412 1.26116 0.98415 1.00864 0.94427 1.70150 1.16451 1.38247 1.32185 0.85063 0.77996 0.77560 0.78297 1.17420 1.20489 1.20428 1.21353 0.77139 0.91264 0.78656 1.90771 1.59494 1.44897 1.40566 0.92853 0.91931 0.92806 0.92013 0.91600 0.90396 0.90287 0.91177 0.89070 0.93133 0.90055 0.88736 0.88928 0.90930 0.70220 0.82874 0.83289 0.75052 0.99610 0.99443 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 71.98 0.70 -0.29 16 2 C -0.12 -0.83 5.40 30.59 0.17 -0.66 16 3 C -0.09 -0.72 2.17 -10.79 -0.02 -0.75 16 4 C -0.11 -1.24 5.09 30.63 0.16 -1.09 16 5 C -0.11 -2.13 4.98 30.45 0.15 -1.98 16 6 C 0.14 2.63 0.84 2.58 0.00 2.63 16 7 C -0.11 -1.27 4.99 30.45 0.15 -1.12 16 8 C -0.11 -0.79 4.86 30.62 0.15 -0.65 16 9 N -0.69 -13.87 5.23 -442.69 -2.31 -16.18 16 10 C 0.70 20.83 8.63 179.37 1.55 22.38 16 11 O -0.58 -21.12 17.49 -3.82 -0.07 -21.19 16 12 N -0.57 -16.89 2.10 -777.34 -1.63 -18.52 16 13 C 0.10 3.05 6.19 85.63 0.53 3.58 16 14 C 0.48 20.32 7.90 87.66 0.69 21.01 16 15 O -0.59 -31.07 16.43 -3.05 -0.05 -31.12 16 16 N -0.70 -30.36 5.55 -466.78 -2.59 -32.95 16 17 C 0.27 15.13 5.43 85.63 0.46 15.59 16 18 C -0.56 -30.68 9.28 25.60 0.24 -30.44 16 19 H 0.09 4.34 7.60 -2.91 -0.02 4.31 16 20 C 0.00 0.07 5.46 84.65 0.46 0.53 16 21 N -0.93 -57.19 13.29 21.44 0.28 -56.90 16 22 Si 0.99 42.88 29.54 68.60 2.03 44.91 16 23 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 26 C 0.53 14.67 6.94 87.77 0.61 15.28 16 27 O -0.49 -15.77 17.77 -2.91 -0.05 -15.82 16 28 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.33 6.55 -2.39 -0.02 0.32 16 30 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.77 7.33 -2.39 -0.02 0.75 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 0.46 6.54 -2.39 -0.02 0.45 16 41 H 0.07 0.47 7.33 -2.39 -0.02 0.45 16 42 H 0.45 6.49 7.71 -92.71 -0.71 5.77 16 43 H 0.15 3.48 8.01 -2.39 -0.02 3.46 16 44 H 0.15 3.61 7.86 -2.39 -0.02 3.59 16 45 H 0.41 14.35 8.32 -92.71 -0.77 13.58 16 46 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 47 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 48 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -83.05 389.79 1.10 -81.94 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.50 Total: 21.78 kcal Atomic # 6 Polarization: 38.05 SS G_CDS: 5.99 Total: 44.04 kcal Atomic # 7 Polarization: -118.30 SS G_CDS: -6.25 Total: -124.55 kcal Atomic # 8 Polarization: -67.95 SS G_CDS: -0.17 Total: -68.12 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -83.05 1.10 -81.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331482292.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.400 kcal (2) G-P(sol) polarization free energy of solvation -83.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds