Wall clock time and date at job start Tue Mar 31 2020 20:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 110.65153 * 2 1 4 4 C 1.52997 * 109.47198 * 62.08746 * 3 2 1 5 5 C 1.53007 * 109.47171 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47106 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99925 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99980 * 180.02562 * 6 5 4 9 9 C 1.37090 * 120.00191 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00544 * 222.83074 * 9 8 6 11 11 C 1.38951 * 119.99790 * 42.83922 * 9 8 6 12 12 N 1.31417 * 120.00240 * 19.09190 * 11 9 8 13 13 Si 1.86803 * 120.00145 * 199.09877 * 11 9 8 14 14 H 1.48500 * 109.46885 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47638 * 119.99672 * 13 11 9 16 16 H 1.48503 * 109.46962 * 239.99818 * 13 11 9 17 17 C 1.46503 * 119.99684 * 359.97438 * 8 6 5 18 18 C 1.54266 * 110.02851 * 239.58306 * 17 8 6 19 19 C 1.54964 * 104.16188 * 217.13870 * 18 17 8 20 20 C 1.54885 * 102.77690 * 37.89055 * 19 18 17 21 21 C 1.53876 * 110.03147 * 122.37370 * 17 8 6 22 22 N 1.47308 * 110.50038 * 122.97066 * 2 1 3 23 23 C 1.34524 * 106.61717 * 118.82531 * 22 2 1 24 24 O 1.21544 * 123.76968 * 179.76810 * 23 22 2 25 25 N 1.33789 * 112.45910 * 359.76503 * 23 22 2 26 26 C 1.34769 * 111.64586 * 0.02562 * 25 23 22 27 27 O 1.21229 * 127.15762 * 179.97438 * 26 25 23 28 28 H 1.09000 * 109.46634 * 182.21011 * 1 2 3 29 29 H 1.08998 * 109.47163 * 302.21302 * 1 2 3 30 30 H 1.09006 * 109.47180 * 62.21783 * 1 2 3 31 31 H 1.08998 * 109.47084 * 182.08774 * 3 2 1 32 32 H 1.09005 * 109.47217 * 302.08515 * 3 2 1 33 33 H 1.08997 * 109.46823 * 299.99552 * 4 3 2 34 34 H 1.08996 * 109.47062 * 59.99967 * 4 3 2 35 35 H 1.09003 * 109.46908 * 300.00336 * 5 4 3 36 36 H 1.09005 * 109.46989 * 59.99925 * 5 4 3 37 37 H 0.96999 * 119.99819 * 174.73556 * 12 11 9 38 38 H 1.09000 * 110.02210 * 0.97668 * 17 8 6 39 39 H 1.08991 * 110.49175 * 335.78919 * 18 17 8 40 40 H 1.09005 * 110.48386 * 98.43041 * 18 17 8 41 41 H 1.09005 * 110.71816 * 279.57772 * 19 18 17 42 42 H 1.08999 * 110.92592 * 156.30217 * 19 18 17 43 43 H 1.09003 * 110.48844 * 203.40716 * 20 19 18 44 44 H 1.09000 * 110.48439 * 80.76276 * 20 19 18 45 45 H 1.09006 * 110.03090 * 238.56770 * 21 17 8 46 46 H 1.08995 * 110.03615 * 359.94563 * 21 17 8 47 47 H 0.96999 * 126.68785 * 298.56075 * 22 2 1 48 48 H 0.97004 * 124.17666 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0696 1.4317 0.0000 4 6 1.6177 2.1471 1.2747 5 6 2.1578 3.5786 1.2749 6 6 1.7131 4.2831 2.5307 7 8 1.0309 3.6979 3.3451 8 7 2.0727 5.5636 2.7484 9 6 1.6677 6.2046 3.8905 10 1 1.3107 7.2227 3.8408 11 6 1.7168 5.5445 5.1123 12 7 2.4755 4.4810 5.2546 13 14 0.7040 6.1687 6.5525 14 1 -0.0591 7.3726 6.1360 15 1 -0.2409 5.1097 6.9892 16 1 1.6075 6.5205 7.6773 17 6 2.8963 6.2705 1.7644 18 6 4.2147 6.7364 2.4160 19 6 4.4896 8.1177 1.7696 20 6 3.0723 8.7326 1.6596 21 6 2.1703 7.5390 1.2833 22 7 2.0459 -0.7509 1.1576 23 6 2.7628 -1.7760 0.6627 24 8 3.3348 -2.5962 1.3536 25 7 2.7758 -1.7918 -0.6751 26 6 2.0637 -0.7706 -1.1912 27 8 1.8899 -0.5184 -2.3642 28 1 -0.3632 -1.0269 0.0396 29 1 -0.3633 0.5478 0.8695 30 1 -0.3634 0.4790 -0.9092 31 1 3.1588 1.4095 -0.0374 32 1 1.6870 1.9642 -0.8707 33 1 0.5286 2.1693 1.3120 34 1 2.0003 1.6146 2.1453 35 1 3.2470 3.5560 1.2377 36 1 1.7755 4.1114 0.4042 37 1 2.5695 4.0653 6.1259 38 1 3.1085 5.6179 0.9176 39 1 4.0924 6.8376 3.4943 40 1 5.0208 6.0396 2.1862 41 1 4.9371 7.9995 0.7827 42 1 5.1265 8.7275 2.4103 43 1 3.0455 9.4922 0.8782 44 1 2.7651 9.1564 2.6156 45 1 2.0308 7.5024 0.2028 46 1 1.2048 7.6282 1.7812 47 1 1.9006 -0.5440 2.0940 48 1 3.2403 -2.4563 -1.2077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332339943.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:54 Heat of formation + Delta-G solvation = -88.360702 kcal Electronic energy + Delta-G solvation = -30350.070118 eV Core-core repulsion = 26212.473297 eV Total energy + Delta-G solvation = -4137.596820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.65135 -38.93258 -38.80061 -37.22952 -36.62318 -35.22637 -33.45865 -32.79720 -31.55751 -30.58148 -28.07475 -27.46330 -26.82635 -25.43185 -24.13751 -23.03862 -21.62854 -20.56187 -20.10151 -19.80184 -18.88507 -18.34581 -16.85075 -16.78535 -16.29945 -15.97955 -15.88948 -15.73039 -15.37153 -14.91701 -14.65258 -14.37112 -14.24768 -14.14097 -13.64755 -13.35884 -12.94478 -12.74126 -12.72137 -12.44668 -12.14748 -11.77415 -11.66657 -11.32270 -11.10048 -11.02669 -10.91707 -10.81550 -10.73857 -10.61593 -10.59201 -10.48431 -10.47646 -10.31761 -10.24023 -10.15034 -10.04073 -9.75800 -9.61515 -8.71638 -7.99120 -7.03252 -6.08307 -3.79755 1.38693 2.26562 2.84403 2.96186 3.29980 3.39958 3.41560 3.75864 4.20594 4.33520 4.39832 4.49737 4.91721 5.08560 5.16087 5.20619 5.23838 5.26533 5.34422 5.42559 5.47590 5.56128 5.62416 5.76198 5.80061 5.86061 5.91369 5.92617 6.02893 6.07195 6.14281 6.19519 6.23551 6.33152 6.42848 6.47978 6.53754 6.60443 6.61413 6.66514 6.76708 6.80991 6.95756 7.18231 7.20319 7.67652 7.99404 8.32209 9.12076 9.22809 9.73774 10.36391 11.01132 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012582 B = 0.003192 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.814885 B = 8769.916917 C =10003.648959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.122 3.878 3 C -0.114 4.114 4 C -0.096 4.096 5 C -0.134 4.134 6 C 0.474 3.526 7 O -0.538 6.538 8 N -0.449 5.449 9 C -0.341 4.341 10 H 0.077 0.923 11 C 0.074 3.926 12 N -0.833 5.833 13 Si 0.905 3.095 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.288 1.288 17 C 0.130 3.870 18 C -0.125 4.125 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.131 4.131 22 N -0.711 5.711 23 C 0.703 3.297 24 O -0.548 6.548 25 N -0.682 5.682 26 C 0.534 3.466 27 O -0.467 6.467 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.261 0.739 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.075 0.925 47 H 0.445 0.555 48 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 -3.848 -12.575 13.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.031 3.969 3 C -0.153 4.153 4 C -0.134 4.134 5 C -0.175 4.175 6 C 0.261 3.739 7 O -0.416 6.416 8 N -0.171 5.171 9 C -0.468 4.468 10 H 0.094 0.906 11 C -0.136 4.136 12 N -0.467 5.467 13 Si 0.733 3.267 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.214 1.214 17 C 0.024 3.976 18 C -0.164 4.164 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.169 4.169 22 N -0.377 5.377 23 C 0.402 3.598 24 O -0.422 6.422 25 N -0.353 5.353 26 C 0.319 3.681 27 O -0.336 6.336 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.291 0.709 48 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 0.321 -4.574 -12.273 13.102 hybrid contribution 0.004 0.061 0.874 0.876 sum 0.324 -4.513 -11.399 12.265 Atomic orbital electron populations 1.22068 0.89953 1.03558 1.05256 1.21545 0.97534 0.94284 0.83525 1.21901 1.01449 0.90569 1.01364 1.21272 1.01764 0.94949 0.95427 1.21593 1.01257 0.95760 0.98851 1.19825 0.83482 0.83440 0.87157 1.90511 1.39844 1.64629 1.46615 1.43404 1.45010 1.10692 1.18041 1.18838 1.44693 0.99284 0.84009 0.90578 1.25167 0.95088 0.95265 0.98090 1.69836 1.33557 1.19836 1.23430 0.86260 0.80366 0.78578 0.81481 1.19708 1.20834 1.21420 1.21686 0.90850 0.93242 0.91774 1.22658 0.96247 0.94672 1.02786 1.22453 0.96618 0.97316 0.99706 1.22257 0.95315 0.97101 1.00822 1.22457 1.00219 0.95006 0.99264 1.45799 1.53970 1.28184 1.09732 1.15878 0.79835 0.82487 0.81564 1.91057 1.48660 1.41784 1.60707 1.44360 1.51196 1.30853 1.08846 1.20868 0.76944 0.80324 0.89952 1.90819 1.57065 1.69012 1.16695 0.91652 0.89130 0.89732 0.90943 0.89309 0.90732 0.91086 0.90996 0.90979 0.92898 0.91529 0.89153 0.93103 0.92563 0.92393 0.92937 0.91626 0.92981 0.90662 0.70890 0.72823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.73 37.16 0.32 -1.00 16 2 C 0.12 1.22 1.00 -132.09 -0.13 1.09 16 3 C -0.11 -1.24 4.56 -26.73 -0.12 -1.36 16 4 C -0.10 -1.37 4.08 -26.73 -0.11 -1.47 16 5 C -0.13 -2.25 4.01 -27.88 -0.11 -2.36 16 6 C 0.47 10.98 6.97 -10.99 -0.08 10.91 16 7 O -0.54 -14.60 13.63 5.55 0.08 -14.52 16 8 N -0.45 -10.37 2.46 -106.55 -0.26 -10.63 16 9 C -0.34 -8.80 7.45 -14.94 -0.11 -8.91 16 10 H 0.08 1.93 7.08 -52.49 -0.37 1.56 16 11 C 0.07 2.00 4.35 -17.47 -0.08 1.92 16 12 N -0.83 -23.66 11.67 55.50 0.65 -23.01 16 13 Si 0.91 21.39 29.60 -169.99 -5.03 16.36 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 C 0.13 2.39 3.20 -66.81 -0.21 2.18 16 18 C -0.13 -2.25 6.42 -25.03 -0.16 -2.41 16 19 C -0.12 -1.78 6.91 -24.70 -0.17 -1.95 16 20 C -0.12 -1.72 6.83 -25.07 -0.17 -1.90 16 21 C -0.13 -2.14 6.19 -25.61 -0.16 -2.30 16 22 N -0.71 -7.67 5.51 -52.94 -0.29 -7.96 16 23 C 0.70 8.49 8.99 -88.02 -0.79 7.70 16 24 O -0.55 -8.57 18.04 5.33 0.10 -8.47 16 25 N -0.68 -6.63 5.70 -15.79 -0.09 -6.72 16 26 C 0.53 5.64 7.48 -10.55 -0.08 5.56 16 27 O -0.47 -5.89 18.02 5.60 0.10 -5.79 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.83 6.49 -51.93 -0.34 0.49 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.08 6.49 -51.93 -0.34 0.74 16 34 H 0.07 1.13 7.15 -51.93 -0.37 0.76 16 35 H 0.07 1.17 7.81 -51.93 -0.41 0.76 16 36 H 0.07 1.05 7.78 -51.93 -0.40 0.65 16 37 H 0.26 7.19 8.32 -40.82 -0.34 6.85 16 38 H 0.07 1.10 5.82 -51.93 -0.30 0.79 16 39 H 0.09 1.95 7.10 -51.93 -0.37 1.58 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.39 6.86 -51.93 -0.36 1.04 16 47 H 0.45 4.76 8.24 -40.82 -0.34 4.42 16 48 H 0.43 3.22 8.96 -40.82 -0.37 2.85 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -33.46 382.67 -8.47 -41.93 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.32 Total: 7.35 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -2.16 Total: 5.70 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.00 Total: -48.33 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: 0.27 Total: -28.78 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.46 -8.47 -41.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332339943.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.430 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds