Wall clock time and date at job start Tue Mar 31 2020 20:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 110.65153 * 2 1 4 4 C 1.52997 * 109.47198 * 62.08746 * 3 2 1 5 5 C 1.53007 * 109.47171 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47106 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99925 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99980 * 180.02562 * 6 5 4 9 9 C 1.37090 * 120.00191 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00544 * 222.83074 * 9 8 6 11 11 C 1.38951 * 119.99790 * 42.83922 * 9 8 6 12 12 N 1.31417 * 120.00240 * 19.09190 * 11 9 8 13 13 Si 1.86803 * 120.00145 * 199.09877 * 11 9 8 14 14 H 1.48500 * 109.46885 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47638 * 119.99672 * 13 11 9 16 16 H 1.48503 * 109.46962 * 239.99818 * 13 11 9 17 17 C 1.46503 * 119.99684 * 359.97438 * 8 6 5 18 18 C 1.54266 * 110.02851 * 239.58306 * 17 8 6 19 19 C 1.54964 * 104.16188 * 217.13870 * 18 17 8 20 20 C 1.54885 * 102.77690 * 37.89055 * 19 18 17 21 21 C 1.53876 * 110.03147 * 122.37370 * 17 8 6 22 22 N 1.47308 * 110.50038 * 122.97066 * 2 1 3 23 23 C 1.34524 * 106.61717 * 118.82531 * 22 2 1 24 24 O 1.21544 * 123.76968 * 179.76810 * 23 22 2 25 25 N 1.33789 * 112.45910 * 359.76503 * 23 22 2 26 26 C 1.34769 * 111.64586 * 0.02562 * 25 23 22 27 27 O 1.21229 * 127.15762 * 179.97438 * 26 25 23 28 28 H 1.09000 * 109.46634 * 182.21011 * 1 2 3 29 29 H 1.08998 * 109.47163 * 302.21302 * 1 2 3 30 30 H 1.09006 * 109.47180 * 62.21783 * 1 2 3 31 31 H 1.08998 * 109.47084 * 182.08774 * 3 2 1 32 32 H 1.09005 * 109.47217 * 302.08515 * 3 2 1 33 33 H 1.08997 * 109.46823 * 299.99552 * 4 3 2 34 34 H 1.08996 * 109.47062 * 59.99967 * 4 3 2 35 35 H 1.09003 * 109.46908 * 300.00336 * 5 4 3 36 36 H 1.09005 * 109.46989 * 59.99925 * 5 4 3 37 37 H 0.96999 * 119.99819 * 174.73556 * 12 11 9 38 38 H 1.09000 * 110.02210 * 0.97668 * 17 8 6 39 39 H 1.08991 * 110.49175 * 335.78919 * 18 17 8 40 40 H 1.09005 * 110.48386 * 98.43041 * 18 17 8 41 41 H 1.09005 * 110.71816 * 279.57772 * 19 18 17 42 42 H 1.08999 * 110.92592 * 156.30217 * 19 18 17 43 43 H 1.09003 * 110.48844 * 203.40716 * 20 19 18 44 44 H 1.09000 * 110.48439 * 80.76276 * 20 19 18 45 45 H 1.09006 * 110.03090 * 238.56770 * 21 17 8 46 46 H 1.08995 * 110.03615 * 359.94563 * 21 17 8 47 47 H 0.96999 * 126.68785 * 298.56075 * 22 2 1 48 48 H 0.97004 * 124.17666 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0696 1.4317 0.0000 4 6 1.6177 2.1471 1.2747 5 6 2.1578 3.5786 1.2749 6 6 1.7131 4.2831 2.5307 7 8 1.0309 3.6979 3.3451 8 7 2.0727 5.5636 2.7484 9 6 1.6677 6.2046 3.8905 10 1 1.3107 7.2227 3.8408 11 6 1.7168 5.5445 5.1123 12 7 2.4755 4.4810 5.2546 13 14 0.7040 6.1687 6.5525 14 1 -0.0591 7.3726 6.1360 15 1 -0.2409 5.1097 6.9892 16 1 1.6075 6.5205 7.6773 17 6 2.8963 6.2705 1.7644 18 6 4.2147 6.7364 2.4160 19 6 4.4896 8.1177 1.7696 20 6 3.0723 8.7326 1.6596 21 6 2.1703 7.5390 1.2833 22 7 2.0459 -0.7509 1.1576 23 6 2.7628 -1.7760 0.6627 24 8 3.3348 -2.5962 1.3536 25 7 2.7758 -1.7918 -0.6751 26 6 2.0637 -0.7706 -1.1912 27 8 1.8899 -0.5184 -2.3642 28 1 -0.3632 -1.0269 0.0396 29 1 -0.3633 0.5478 0.8695 30 1 -0.3634 0.4790 -0.9092 31 1 3.1588 1.4095 -0.0374 32 1 1.6870 1.9642 -0.8707 33 1 0.5286 2.1693 1.3120 34 1 2.0003 1.6146 2.1453 35 1 3.2470 3.5560 1.2377 36 1 1.7755 4.1114 0.4042 37 1 2.5695 4.0653 6.1259 38 1 3.1085 5.6179 0.9176 39 1 4.0924 6.8376 3.4943 40 1 5.0208 6.0396 2.1862 41 1 4.9371 7.9995 0.7827 42 1 5.1265 8.7275 2.4103 43 1 3.0455 9.4922 0.8782 44 1 2.7651 9.1564 2.6156 45 1 2.0308 7.5024 0.2028 46 1 1.2048 7.6282 1.7812 47 1 1.9006 -0.5440 2.0940 48 1 3.2403 -2.4563 -1.2077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332339943.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:53 Heat of formation + Delta-G solvation = -112.156034 kcal Electronic energy + Delta-G solvation = -30351.101961 eV Core-core repulsion = 26212.473297 eV Total energy + Delta-G solvation = -4138.628663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.55874 -40.54943 -39.78614 -38.45701 -37.88844 -36.26304 -35.12441 -34.07406 -33.30041 -31.63082 -29.39156 -28.69629 -28.23270 -26.67782 -25.56184 -24.01615 -22.81747 -21.48926 -21.34220 -21.28728 -20.55340 -19.26885 -18.18768 -17.69388 -17.64030 -17.45516 -16.92581 -16.74782 -16.68933 -16.37553 -16.15111 -15.72851 -15.46355 -15.33309 -15.02203 -14.69082 -14.25810 -14.02094 -13.89295 -13.53679 -13.37248 -13.07208 -12.92785 -12.86946 -12.65465 -12.46029 -12.33943 -12.27088 -12.10248 -12.03211 -11.96891 -11.79489 -11.74218 -11.54170 -11.51952 -11.32264 -11.21994 -11.18329 -10.68614 -10.54283 -9.83648 -8.91854 -8.11806 -5.83265 0.48635 1.37142 1.39791 1.44391 1.51024 1.90545 2.08963 2.34385 2.61355 2.87007 3.24420 3.32295 3.51683 3.68804 3.93551 3.98197 4.05020 4.20498 4.24201 4.34025 4.38780 4.60823 4.64287 4.68358 4.73249 4.74958 4.81169 4.86218 4.88483 4.90761 4.95921 4.98991 5.04040 5.13844 5.18027 5.22666 5.33463 5.34059 5.47744 5.50801 5.62527 5.64639 5.71191 5.73071 5.85867 6.32700 6.33215 7.06579 7.16989 7.36031 7.88173 8.53363 8.97714 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012582 B = 0.003192 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.814885 B = 8769.916917 C =10003.648959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.123 3.877 3 C -0.103 4.103 4 C -0.087 4.087 5 C -0.123 4.123 6 C 0.456 3.544 7 O -0.588 6.588 8 N -0.464 5.464 9 C -0.340 4.340 10 H 0.073 0.927 11 C 0.025 3.975 12 N -0.869 5.869 13 Si 0.955 3.045 14 H -0.260 1.260 15 H -0.297 1.297 16 H -0.280 1.280 17 C 0.121 3.879 18 C -0.126 4.126 19 C -0.111 4.111 20 C -0.115 4.115 21 C -0.127 4.127 22 N -0.708 5.708 23 C 0.706 3.294 24 O -0.586 6.586 25 N -0.669 5.669 26 C 0.544 3.456 27 O -0.481 6.481 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.254 0.746 38 H 0.093 0.907 39 H 0.043 0.957 40 H 0.055 0.945 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.045 0.955 45 H 0.084 0.916 46 H 0.046 0.954 47 H 0.445 0.555 48 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.781 -2.766 -15.540 15.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.033 3.967 3 C -0.141 4.141 4 C -0.125 4.125 5 C -0.164 4.164 6 C 0.245 3.755 7 O -0.470 6.470 8 N -0.186 5.186 9 C -0.468 4.468 10 H 0.091 0.909 11 C -0.180 4.180 12 N -0.505 5.505 13 Si 0.782 3.218 14 H -0.184 1.184 15 H -0.224 1.224 16 H -0.206 1.206 17 C 0.017 3.983 18 C -0.165 4.165 19 C -0.149 4.149 20 C -0.152 4.152 21 C -0.165 4.165 22 N -0.372 5.372 23 C 0.405 3.595 24 O -0.463 6.463 25 N -0.340 5.340 26 C 0.330 3.670 27 O -0.351 6.351 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.063 0.937 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.064 0.936 45 H 0.103 0.897 46 H 0.065 0.935 47 H 0.290 0.710 48 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 0.590 -3.439 -15.280 15.673 hybrid contribution -0.097 -0.226 1.741 1.758 sum 0.494 -3.665 -13.539 14.035 Atomic orbital electron populations 1.22078 0.88724 1.04176 1.05633 1.21603 0.98404 0.93719 0.82955 1.21785 1.01690 0.90616 1.00059 1.21137 1.01367 0.93615 0.96359 1.21544 1.01809 0.96676 0.96331 1.20955 0.82545 0.83391 0.88564 1.90474 1.41934 1.65755 1.48800 1.43687 1.45594 1.11188 1.18092 1.18986 1.43628 0.99067 0.85093 0.90948 1.25842 0.96029 0.95717 1.00460 1.69940 1.35614 1.21600 1.23336 0.85471 0.79020 0.77927 0.79376 1.18433 1.22413 1.20614 1.22009 0.90560 0.94321 0.91381 1.22589 0.96398 0.97373 1.00131 1.22417 0.96758 0.94730 1.00972 1.22253 0.94894 0.97167 1.00915 1.22424 0.98745 0.94502 1.00864 1.45856 1.53417 1.27852 1.10078 1.15924 0.79426 0.82165 0.81970 1.91035 1.50328 1.43275 1.61678 1.44185 1.50825 1.30950 1.08004 1.20745 0.76527 0.80173 0.89589 1.90826 1.57632 1.69418 1.17254 0.90935 0.89669 0.88463 0.90604 0.87241 0.91108 0.93431 0.90095 0.87858 0.93700 0.88898 0.93782 0.92615 0.89558 0.91701 0.89723 0.93630 0.89710 0.93493 0.70956 0.71523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.73 71.98 0.63 -1.69 16 2 C 0.12 2.25 1.00 2.99 0.00 2.25 16 3 C -0.10 -1.97 4.56 30.59 0.14 -1.83 16 4 C -0.09 -2.36 4.08 30.60 0.12 -2.24 16 5 C -0.12 -3.92 4.01 29.85 0.12 -3.80 16 6 C 0.46 21.28 6.97 87.66 0.61 21.89 16 7 O -0.59 -32.91 13.63 -3.06 -0.04 -32.95 16 8 N -0.46 -21.53 2.46 -609.39 -1.50 -23.03 16 9 C -0.34 -17.96 7.45 84.04 0.63 -17.33 16 10 H 0.07 3.78 7.08 -2.91 -0.02 3.76 16 11 C 0.03 1.40 4.35 84.93 0.37 1.77 16 12 N -0.87 -51.48 11.67 21.66 0.25 -51.22 16 13 Si 0.96 45.31 29.60 68.60 2.03 47.34 16 14 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 15 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 C 0.12 4.27 3.20 45.72 0.15 4.42 16 18 C -0.13 -4.42 6.42 31.70 0.20 -4.21 16 19 C -0.11 -2.88 6.91 31.91 0.22 -2.66 16 20 C -0.11 -3.06 6.83 31.67 0.22 -2.84 16 21 C -0.13 -3.84 6.19 31.32 0.19 -3.65 16 22 N -0.71 -14.75 5.51 -439.82 -2.42 -17.17 16 23 C 0.71 16.48 8.99 179.44 1.61 18.10 16 24 O -0.59 -18.31 18.04 -3.85 -0.07 -18.38 16 25 N -0.67 -11.92 5.70 -441.12 -2.52 -14.44 16 26 C 0.54 10.24 7.48 87.94 0.66 10.90 16 27 O -0.48 -10.85 18.02 -2.87 -0.05 -10.91 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.46 6.49 -2.39 -0.02 1.44 16 30 H 0.10 1.30 8.14 -2.38 -0.02 1.29 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.07 1.99 6.49 -2.39 -0.02 1.97 16 34 H 0.05 1.52 7.15 -2.39 -0.02 1.50 16 35 H 0.08 2.45 7.81 -2.39 -0.02 2.43 16 36 H 0.10 2.64 7.78 -2.38 -0.02 2.62 16 37 H 0.25 14.70 8.32 -92.71 -0.77 13.93 16 38 H 0.09 2.75 5.82 -2.39 -0.01 2.74 16 39 H 0.04 1.95 7.10 -2.39 -0.02 1.93 16 40 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 46 H 0.05 1.69 6.86 -2.39 -0.02 1.67 16 47 H 0.44 9.57 8.24 -92.71 -0.76 8.81 16 48 H 0.44 5.90 8.96 -92.70 -0.83 5.07 16 Total: -1.00 -76.10 382.67 0.97 -75.14 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: -0.59 Total: 26.54 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 5.87 Total: 19.08 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -6.18 Total: -105.86 kcal Atomic # 8 Polarization: -62.07 SS G_CDS: -0.16 Total: -62.24 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -76.10 0.97 -75.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332339943.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.019 kcal (2) G-P(sol) polarization free energy of solvation -76.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds