Wall clock time and date at job start Tue Mar 31 2020 20:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34081 * 126.69471 * 2 1 4 4 N 1.20914 * 111.75508 * 179.97438 * 3 2 1 5 5 C 1.30747 * 111.47341 * 0.02562 * 4 3 2 6 6 N 1.39351 * 126.90334 * 180.02562 * 5 4 3 7 7 C 1.34778 * 120.00090 * 0.02562 * 6 5 4 8 8 O 1.21365 * 119.99844 * 0.02562 * 7 6 5 9 9 C 1.49371 * 120.00207 * 179.72555 * 7 6 5 10 10 O 1.21362 * 120.00330 * 354.52621 * 9 7 6 11 11 N 1.34779 * 119.99953 * 174.52615 * 9 7 6 12 12 C 1.46493 * 120.00211 * 4.02116 * 11 9 7 13 13 C 1.50710 * 109.46750 * 83.08201 * 12 11 9 14 14 H 1.07994 * 120.00027 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99905 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00227 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00088 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46649 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47061 * 120.00171 * 17 15 13 20 20 H 1.48496 * 109.46814 * 240.00218 * 17 15 13 21 21 C 1.46503 * 119.99873 * 184.02509 * 11 9 7 22 22 C 1.53004 * 109.47207 * 90.00202 * 21 11 9 23 23 C 1.52998 * 109.47469 * 180.02562 * 22 21 11 24 24 C 1.52994 * 109.47164 * 174.99698 * 23 22 21 25 25 C 1.53001 * 109.47143 * 295.00166 * 23 22 21 26 26 C 1.35244 * 126.68846 * 180.30315 * 2 1 3 27 27 C 1.50700 * 128.02250 * 0.02562 * 26 2 1 28 28 H 1.09005 * 109.46905 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47188 * 120.02079 * 1 2 3 30 30 H 1.08996 * 109.47018 * 240.02890 * 1 2 3 31 31 H 0.96998 * 120.00619 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.47811 * 203.07723 * 12 11 9 33 33 H 1.09002 * 109.47520 * 323.08383 * 12 11 9 34 34 H 0.97000 * 120.00571 * 180.02562 * 16 15 13 35 35 H 1.08999 * 109.47440 * 210.00047 * 21 11 9 36 36 H 1.09000 * 109.47457 * 330.00494 * 21 11 9 37 37 H 1.09004 * 109.46786 * 299.99766 * 22 21 11 38 38 H 1.08996 * 109.47387 * 59.99804 * 22 21 11 39 39 H 1.09006 * 109.46982 * 54.99782 * 23 22 21 40 40 H 1.08998 * 109.47388 * 60.00142 * 24 23 22 41 41 H 1.09005 * 109.47219 * 180.02562 * 24 23 22 42 42 H 1.08999 * 109.47455 * 299.99862 * 24 23 22 43 43 H 1.09000 * 109.47421 * 180.02562 * 25 23 22 44 44 H 1.09007 * 109.46409 * 299.99956 * 25 23 22 45 45 H 1.09001 * 109.47122 * 59.99433 * 25 23 22 46 46 H 1.08992 * 109.47331 * 270.15406 * 27 26 2 47 47 H 1.08995 * 109.47264 * 30.15857 * 27 26 2 48 48 H 1.09007 * 109.46893 * 150.15479 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3082 1.0751 0.0000 4 7 3.4765 0.7634 0.0005 5 6 3.6252 -0.5356 0.0004 6 7 4.8275 -1.2401 0.0013 7 6 5.9991 -0.5738 0.0031 8 8 6.0069 0.6398 0.0043 9 6 7.2878 -1.3289 0.0103 10 8 7.2821 -2.5380 0.1148 11 7 8.4570 -0.6675 -0.0993 12 6 8.4695 0.7969 -0.1368 13 6 8.4152 1.3358 1.2696 14 1 8.3757 0.6555 2.1074 15 6 8.4158 2.6974 1.4866 16 7 8.4633 3.5259 0.4663 17 14 8.3491 3.3654 3.2298 18 1 8.3012 2.2349 4.1915 19 1 9.5576 4.1877 3.4913 20 1 7.1348 4.2045 3.3921 21 6 9.7155 -1.4131 -0.1810 22 6 10.0391 -1.7084 -1.6470 23 6 11.3530 -2.4876 -1.7324 24 6 11.6133 -2.8909 -3.1851 25 6 12.5011 -1.6077 -1.2338 26 6 2.3150 -1.0845 -0.0057 27 6 1.9176 -2.5381 -0.0140 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5142 -0.8898 30 1 -0.3633 -0.5134 0.8902 31 1 4.8214 -2.2101 0.0007 32 1 9.3831 1.1402 -0.6223 33 1 7.6047 1.1535 -0.6962 34 1 8.4642 4.4838 0.6189 35 1 10.5186 -0.8196 0.2558 36 1 9.6183 -2.3512 0.3655 37 1 9.2360 -2.3021 -2.0839 38 1 10.1363 -0.7705 -2.1937 39 1 11.2857 -3.3823 -1.1134 40 1 11.6806 -1.9963 -3.8041 41 1 12.5492 -3.4465 -3.2459 42 1 10.7955 -3.5178 -3.5403 43 1 13.4373 -2.1627 -1.2950 44 1 12.5683 -0.7130 -1.8528 45 1 12.3156 -1.3204 -0.1988 46 1 1.8188 -2.8936 1.0116 47 1 0.9650 -2.6515 -0.5312 48 1 2.6819 -3.1208 -0.5284 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340305727.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:57 Heat of formation + Delta-G solvation = -28.002552 kcal Electronic energy + Delta-G solvation = -30069.845567 eV Core-core repulsion = 25934.866072 eV Total energy + Delta-G solvation = -4134.979494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.95600 -41.95534 -39.86935 -38.06912 -37.30538 -36.26068 -35.16870 -34.53255 -33.05161 -30.89963 -30.06542 -29.05192 -27.99842 -27.92950 -26.73463 -25.06672 -24.32521 -23.07900 -21.82630 -20.88200 -20.43616 -19.24089 -18.82326 -18.60957 -18.17899 -17.74244 -17.00158 -16.87491 -16.69435 -16.21094 -15.97343 -15.38627 -15.30121 -14.82513 -14.64235 -14.40850 -14.33285 -14.28319 -14.26474 -13.77752 -13.73426 -13.61278 -13.21689 -13.14754 -13.03360 -12.97985 -12.85729 -12.74706 -12.65807 -12.42846 -12.25516 -12.04812 -11.92838 -11.88959 -11.65465 -11.54609 -11.42915 -10.75443 -10.28340 -10.06279 -9.92495 -9.63727 -8.20924 -6.30609 0.17071 0.58769 1.09689 1.27341 1.30905 1.34555 1.43807 2.18946 2.25869 2.36267 2.45332 3.10373 3.12888 3.34226 3.80961 3.87440 3.89310 3.92270 4.04531 4.22158 4.25448 4.50487 4.61986 4.62774 4.70412 4.76278 4.80099 4.80517 4.83314 4.86954 4.89937 4.97238 5.02859 5.05599 5.09682 5.12663 5.14971 5.29650 5.34118 5.41140 5.46285 5.49473 5.52190 5.69065 5.87182 6.03979 6.20247 6.61501 6.73860 6.94731 7.36140 7.47589 8.87684 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008791 B = 0.003999 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3184.476067 B = 6999.514117 C = 9535.565495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.023 4.023 3 O 0.087 5.913 4 N -0.400 5.400 5 C 0.220 3.780 6 N -0.606 5.606 7 C 0.477 3.523 8 O -0.454 6.454 9 C 0.512 3.488 10 O -0.553 6.553 11 N -0.560 5.560 12 C 0.242 3.758 13 C -0.526 4.526 14 H 0.044 0.956 15 C 0.021 3.979 16 N -0.919 5.919 17 Si 0.952 3.048 18 H -0.271 1.271 19 H -0.266 1.266 20 H -0.287 1.287 21 C 0.111 3.889 22 C -0.119 4.119 23 C -0.088 4.088 24 C -0.142 4.142 25 C -0.150 4.150 26 C -0.216 4.216 27 C -0.071 4.071 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.439 0.561 32 H 0.022 0.978 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.086 0.914 47 H 0.104 0.896 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.419 -15.291 -4.289 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.086 4.086 3 O 0.025 5.975 4 N -0.115 5.115 5 C -0.029 4.029 6 N -0.263 5.263 7 C 0.258 3.742 8 O -0.320 6.320 9 C 0.294 3.706 10 O -0.434 6.434 11 N -0.290 5.290 12 C 0.122 3.878 13 C -0.565 4.565 14 H 0.062 0.938 15 C -0.179 4.179 16 N -0.558 5.558 17 Si 0.778 3.222 18 H -0.196 1.196 19 H -0.191 1.191 20 H -0.213 1.213 21 C -0.010 4.010 22 C -0.158 4.158 23 C -0.107 4.107 24 C -0.199 4.199 25 C -0.207 4.207 26 C -0.222 4.222 27 C -0.128 4.128 28 H 0.109 0.891 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.280 0.720 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.104 0.896 47 H 0.123 0.877 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.450 -13.763 -4.285 17.236 hybrid contribution -0.001 0.008 0.882 0.882 sum -9.450 -13.755 -3.403 17.032 Atomic orbital electron populations 1.20622 0.79815 1.05971 1.06081 1.25123 0.98232 0.84565 1.00713 1.84880 1.10524 1.33755 1.68374 1.74567 0.97414 1.14963 1.24520 1.20873 0.88331 0.89329 1.04388 1.42223 1.00769 1.11120 1.72176 1.20812 0.85901 0.88255 0.79227 1.91024 1.85971 1.13883 1.41149 1.19545 0.85049 0.86808 0.79172 1.90630 1.87516 1.13118 1.52159 1.48239 1.05446 1.09590 1.65686 1.19577 0.97974 0.72996 0.97260 1.21412 1.50961 0.91865 0.92256 0.93806 1.25576 0.94560 0.97066 1.00662 1.70024 1.50976 1.03085 1.31763 0.85600 0.77858 0.78388 0.80362 1.19587 1.19137 1.21302 1.21811 0.84096 0.96810 0.98311 1.21933 0.98478 1.00335 0.95041 1.21029 0.93033 0.98352 0.98254 1.21797 1.02105 1.01270 0.94762 1.21912 0.98249 0.99642 1.00939 1.21133 0.87409 1.00532 1.13139 1.20250 1.03489 0.85094 1.03947 0.89080 0.86651 0.86922 0.71962 0.95999 0.93559 0.92713 0.89701 0.89829 0.92470 0.92751 0.90301 0.93064 0.91052 0.92668 0.90978 0.93261 0.93089 0.89587 0.87711 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.22 71.24 0.73 0.05 16 2 C -0.02 -0.53 7.48 24.99 0.19 -0.34 16 3 O 0.09 2.98 11.19 71.25 0.80 3.78 16 4 N -0.40 -17.11 10.38 -56.34 -0.58 -17.70 16 5 C 0.22 7.93 7.90 134.16 1.06 8.99 16 6 N -0.61 -22.11 5.41 -310.80 -1.68 -23.79 16 7 C 0.48 21.82 7.73 87.24 0.67 22.49 16 8 O -0.45 -25.03 11.15 -3.29 -0.04 -25.06 16 9 C 0.51 22.58 7.66 87.24 0.67 23.25 16 10 O -0.55 -22.91 16.04 -3.28 -0.05 -22.97 16 11 N -0.56 -25.27 2.48 -827.80 -2.05 -27.32 16 12 C 0.24 13.07 4.77 85.64 0.41 13.47 16 13 C -0.53 -30.84 8.33 25.60 0.21 -30.63 16 14 H 0.04 2.60 7.81 -2.91 -0.02 2.57 16 15 C 0.02 1.25 5.46 84.65 0.46 1.71 16 16 N -0.92 -56.95 13.29 21.45 0.28 -56.67 16 17 Si 0.95 47.17 29.54 68.60 2.03 49.20 16 18 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 21 C 0.11 4.05 5.16 86.38 0.45 4.50 16 22 C -0.12 -3.68 5.01 30.60 0.15 -3.53 16 23 C -0.09 -2.08 2.92 -10.80 -0.03 -2.11 16 24 C -0.14 -2.85 9.19 71.98 0.66 -2.19 16 25 C -0.15 -3.47 8.95 71.98 0.64 -2.83 16 26 C -0.22 -5.27 6.34 -19.61 -0.12 -5.40 16 27 C -0.07 -0.98 10.30 71.24 0.73 -0.24 16 28 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.44 12.80 8.25 -92.71 -0.76 12.04 16 32 H 0.02 1.22 8.02 -2.39 -0.02 1.20 16 33 H 0.05 2.81 5.39 -2.40 -0.01 2.80 16 34 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.08 3.10 6.50 -2.39 -0.02 3.09 16 36 H 0.08 2.92 7.37 -2.39 -0.02 2.90 16 37 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.05 1.27 6.57 -2.39 -0.02 1.25 16 46 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.10 0.80 8.07 -2.39 -0.02 0.78 16 48 H 0.07 0.97 8.08 -2.38 -0.02 0.95 16 Total: -1.00 -80.49 400.29 5.80 -74.69 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.21 Total: 18.63 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: 6.88 Total: 27.21 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -4.03 Total: -125.47 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: 0.71 Total: -44.25 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -80.49 5.80 -74.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340305727.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.688 kcal (2) G-P(sol) polarization free energy of solvation -80.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds