Wall clock time and date at job start Tue Mar 31 2020 21:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47282 * 2 1 4 4 O 1.34240 * 126.82822 * 270.02594 * 3 2 1 5 5 N 1.20889 * 111.66168 * 179.97438 * 4 3 2 6 6 C 1.30155 * 111.78002 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.81435 * 180.02562 * 6 5 4 8 8 C 1.35997 * 126.83349 * 89.96508 * 3 2 1 9 9 N 1.40409 * 128.07536 * 0.07457 * 8 3 2 10 10 C 1.34772 * 120.00134 * 210.46980 * 9 8 3 11 11 O 1.21409 * 119.99823 * 4.92404 * 10 9 8 12 12 C 1.49323 * 120.00248 * 184.92285 * 10 9 8 13 13 O 1.21355 * 119.99711 * 0.02562 * 12 10 9 14 14 N 1.34780 * 120.00055 * 179.97438 * 12 10 9 15 15 C 1.46498 * 119.99827 * 179.97438 * 14 12 10 16 16 C 1.52994 * 109.47134 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47324 * 300.00280 * 16 15 14 18 18 C 1.53004 * 109.47029 * 60.00129 * 16 15 14 19 19 C 1.53000 * 109.47352 * 179.97438 * 16 15 14 20 20 C 1.50700 * 109.47236 * 179.97438 * 19 16 15 21 21 H 1.08007 * 119.99980 * 0.02562 * 20 19 16 22 22 C 1.37878 * 119.99953 * 179.97438 * 20 19 16 23 23 N 1.31510 * 120.00192 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99933 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46679 * 60.00414 * 24 22 20 26 26 H 1.48492 * 109.46970 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47167 * 300.00411 * 24 22 20 28 28 H 1.09006 * 109.47023 * 60.00196 * 1 2 3 29 29 H 1.08997 * 109.47012 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46920 * 300.00172 * 1 2 3 31 31 H 1.09000 * 109.46920 * 239.99828 * 2 1 3 32 32 H 1.09001 * 109.46555 * 119.99736 * 2 1 3 33 33 H 1.09004 * 109.46855 * 84.37622 * 7 6 5 34 34 H 1.08998 * 109.46830 * 204.37227 * 7 6 5 35 35 H 1.08997 * 109.47182 * 324.37771 * 7 6 5 36 36 H 0.97001 * 119.99976 * 30.45883 * 9 8 3 37 37 H 0.96999 * 119.99743 * 0.02562 * 14 12 10 38 38 H 1.08996 * 109.47250 * 300.00650 * 15 14 12 39 39 H 1.09008 * 109.46770 * 60.00109 * 15 14 12 40 40 H 1.09007 * 109.46865 * 59.99853 * 17 16 15 41 41 H 1.08997 * 109.47211 * 179.97438 * 17 16 15 42 42 H 1.08997 * 109.47474 * 299.99720 * 17 16 15 43 43 H 1.09002 * 109.47001 * 59.99794 * 18 16 15 44 44 H 1.09000 * 109.47417 * 179.97438 * 18 16 15 45 45 H 1.08997 * 109.47331 * 300.00242 * 18 16 15 46 46 H 1.08989 * 109.47430 * 300.00599 * 19 16 15 47 47 H 1.09007 * 109.46543 * 60.00816 * 19 16 15 48 48 H 0.96999 * 120.00417 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.3002 2.1795 -1.0745 5 7 2.6888 3.2797 -0.7582 6 6 2.7384 3.4212 0.5347 7 6 3.1716 4.6494 1.2927 8 6 2.3036 2.1896 1.0885 9 7 2.1823 1.8448 2.4442 10 6 1.8887 2.7920 3.3568 11 8 1.6412 3.9250 2.9976 12 6 1.8679 2.4480 4.8097 13 8 2.1157 1.3156 5.1687 14 7 1.5748 3.3955 5.7224 15 6 1.5538 3.0578 7.1478 16 6 1.1970 4.3032 7.9617 17 6 2.2413 5.3929 7.7111 18 6 -0.1824 4.8115 7.5377 19 6 1.1744 3.9504 9.4503 20 6 0.8235 5.1772 10.2521 21 1 0.6349 6.1148 9.7500 22 6 0.7421 5.1026 11.6264 23 7 0.9711 3.9610 12.2377 24 14 0.3064 6.6233 12.6202 25 1 -1.0320 7.1173 12.2078 26 1 0.2846 6.2809 14.0649 27 1 1.3206 7.6805 12.3776 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3284 5.3336 1.3882 34 1 3.5192 4.3604 2.2846 35 1 3.9805 5.1427 0.7537 36 1 2.3096 0.9247 2.7238 37 1 1.3771 4.3007 5.4354 38 1 0.8102 2.2811 7.3263 39 1 2.5368 2.6960 7.4500 40 1 2.2568 5.6441 6.6504 41 1 1.9867 6.2802 8.2906 42 1 3.2240 5.0308 8.0131 43 1 -0.9264 4.0352 7.7162 44 1 -0.4370 5.6985 8.1178 45 1 -0.1669 5.0627 6.4772 46 1 0.4303 3.1743 9.6286 47 1 2.1570 3.5881 9.7527 48 1 0.9142 3.9086 13.2046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357986438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:57 Heat of formation + Delta-G solvation = -25.982748 kcal Electronic energy + Delta-G solvation = -29412.481299 eV Core-core repulsion = 25277.589390 eV Total energy + Delta-G solvation = -4134.891909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.27577 -40.98780 -39.04261 -37.29044 -36.40566 -34.89915 -33.97655 -33.47147 -32.15552 -30.19696 -28.83776 -27.53092 -26.90328 -26.58146 -25.16693 -24.34696 -23.13715 -22.04579 -21.06706 -20.24860 -19.15426 -18.26494 -17.95869 -17.69075 -16.71564 -16.39143 -16.28949 -16.06515 -15.40416 -15.06127 -14.68051 -14.54820 -14.33122 -14.02904 -13.63948 -13.55496 -13.33165 -13.21234 -13.00293 -12.86164 -12.82485 -12.27688 -12.18650 -12.10617 -11.91113 -11.85053 -11.58905 -11.25602 -11.05314 -11.04650 -10.90835 -10.68948 -10.51460 -10.32796 -9.96799 -9.96243 -9.86783 -9.26215 -9.08921 -9.00966 -8.88464 -8.40260 -6.04584 -4.06085 0.80343 1.29087 1.84500 2.01141 2.73652 3.04310 3.29603 3.35130 3.36230 3.41839 3.95941 3.98183 4.26565 4.41700 4.44225 4.64735 4.69065 4.75503 5.19764 5.21070 5.30846 5.32246 5.34054 5.42912 5.47288 5.48456 5.56665 5.64987 5.71943 5.86607 5.95414 6.05561 6.07406 6.11484 6.25986 6.28217 6.55903 6.56660 6.62412 6.97143 7.00092 7.02652 7.18984 7.48129 7.56738 7.68029 7.87528 7.93110 7.93477 8.34807 8.98137 9.57381 11.06754 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.025385 B = 0.002122 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.750915 B =13194.972844 C =13781.336109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.039 4.039 3 C -0.050 4.050 4 O 0.108 5.892 5 N -0.357 5.357 6 C 0.037 3.963 7 C -0.061 4.061 8 C 0.034 3.966 9 N -0.614 5.614 10 C 0.506 3.494 11 O -0.491 6.491 12 C 0.505 3.495 13 O -0.523 6.523 14 N -0.682 5.682 15 C 0.124 3.876 16 C -0.073 4.073 17 C -0.130 4.130 18 C -0.130 4.130 19 C 0.037 3.963 20 C -0.513 4.513 21 H 0.059 0.941 22 C 0.057 3.943 23 N -0.895 5.895 24 Si 0.889 3.111 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.426 0.574 37 H 0.412 0.588 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.030 0.970 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.030 0.970 46 H 0.019 0.981 47 H 0.019 0.981 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.930 -6.795 -24.304 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.078 4.078 3 C -0.117 4.117 4 O 0.045 5.955 5 N -0.063 5.063 6 C -0.123 4.123 7 C -0.118 4.118 8 C -0.064 4.064 9 N -0.265 5.265 10 C 0.288 3.712 11 O -0.363 6.363 12 C 0.284 3.716 13 O -0.400 6.400 14 N -0.335 5.335 15 C 0.002 3.998 16 C -0.073 4.073 17 C -0.187 4.187 18 C -0.187 4.187 19 C -0.001 4.001 20 C -0.551 4.551 21 H 0.077 0.923 22 C -0.144 4.144 23 N -0.534 5.534 24 Si 0.718 3.282 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.203 1.203 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.265 0.735 37 H 0.250 0.750 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.049 0.951 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.223 -6.033 -25.074 25.886 hybrid contribution -0.358 0.418 1.452 1.553 sum 1.865 -5.615 -23.622 24.352 Atomic orbital electron populations 1.21798 0.93204 1.02922 1.02991 1.20104 0.96888 0.85977 1.04790 1.23978 1.04770 0.97598 0.85333 1.84860 1.61951 1.17322 1.31393 1.73828 1.17574 0.99469 1.15415 1.23456 1.01527 0.97656 0.89696 1.20260 1.01733 0.91844 0.97998 1.18041 1.07809 0.95382 0.85178 1.42268 1.68698 1.13216 1.02350 1.20582 0.77888 0.85102 0.87603 1.90842 1.44253 1.20113 1.81126 1.19609 0.79978 0.86105 0.85929 1.90785 1.48080 1.20105 1.81004 1.46068 1.66537 1.13256 1.07590 1.21896 1.02376 0.99184 0.76327 1.20941 0.95095 0.92477 0.98787 1.21794 0.98464 0.99807 0.98667 1.21796 0.96407 1.02238 0.98305 1.19092 0.97578 0.97182 0.86208 1.21126 1.47133 0.95706 0.91131 0.92255 1.25005 0.95557 0.95793 0.98077 1.69943 1.49573 1.24649 1.09200 0.86701 0.78980 0.83425 0.79142 1.20299 1.21392 1.20300 0.91875 0.90980 0.92141 0.88870 0.88780 0.89044 0.90407 0.91384 0.73471 0.75034 0.90911 0.90905 0.95073 0.91169 0.93223 0.93238 0.91167 0.95076 0.96234 0.96237 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.90 37.16 0.37 -0.41 16 2 C -0.04 -0.20 6.50 -27.88 -0.18 -0.38 16 3 C -0.05 -0.43 6.77 -35.12 -0.24 -0.67 16 4 O 0.11 1.13 11.20 16.65 0.19 1.32 16 5 N -0.36 -4.36 12.06 33.58 0.40 -3.96 16 6 C 0.04 0.44 7.02 -81.92 -0.58 -0.13 16 7 C -0.06 -0.66 8.43 36.01 0.30 -0.36 16 8 C 0.03 0.36 6.79 -83.35 -0.57 -0.21 16 9 N -0.61 -6.05 5.45 -10.09 -0.05 -6.11 16 10 C 0.51 5.99 7.20 -11.65 -0.08 5.91 16 11 O -0.49 -6.39 11.98 5.45 0.07 -6.33 16 12 C 0.50 6.73 7.88 -11.64 -0.09 6.64 16 13 O -0.52 -7.96 16.48 5.49 0.09 -7.87 16 14 N -0.68 -9.29 4.95 -60.78 -0.30 -9.59 16 15 C 0.12 1.98 4.56 -4.05 -0.02 1.97 16 16 C -0.07 -1.30 0.54 -154.51 -0.08 -1.38 16 17 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 18 C -0.13 -2.19 8.05 37.16 0.30 -1.90 16 19 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 20 C -0.51 -13.19 7.65 -34.44 -0.26 -13.46 16 21 H 0.06 1.47 5.68 -52.48 -0.30 1.17 16 22 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 23 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 24 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.35 8.02 -51.93 -0.42 -0.07 16 33 H 0.09 1.04 7.49 -51.93 -0.39 0.65 16 34 H 0.08 0.86 6.34 -51.93 -0.33 0.53 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.43 3.40 8.18 -40.82 -0.33 3.06 16 37 H 0.41 5.25 5.63 -40.82 -0.23 5.02 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 40 H 0.03 0.43 6.86 -51.92 -0.36 0.08 16 41 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 45 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 46 H 0.02 0.49 8.14 -51.94 -0.42 0.07 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 391.28 15.07 5.90 5.90 Total: -1.00 -30.44 391.28 -6.22 -36.66 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.18 Total: 3.28 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.04 Total: -4.06 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.79 Total: -44.69 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.34 Total: -12.88 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.44 -6.22 -36.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357986438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.677 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds