Wall clock time and date at job start Tue Mar 31 2020 21:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47282 * 2 1 4 4 O 1.34240 * 126.82822 * 270.02594 * 3 2 1 5 5 N 1.20889 * 111.66168 * 179.97438 * 4 3 2 6 6 C 1.30155 * 111.78002 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.81435 * 180.02562 * 6 5 4 8 8 C 1.35997 * 126.83349 * 89.96508 * 3 2 1 9 9 N 1.40409 * 128.07536 * 0.07457 * 8 3 2 10 10 C 1.34772 * 120.00134 * 210.46980 * 9 8 3 11 11 O 1.21409 * 119.99823 * 4.92404 * 10 9 8 12 12 C 1.49323 * 120.00248 * 184.92285 * 10 9 8 13 13 O 1.21355 * 119.99711 * 0.02562 * 12 10 9 14 14 N 1.34780 * 120.00055 * 179.97438 * 12 10 9 15 15 C 1.46498 * 119.99827 * 179.97438 * 14 12 10 16 16 C 1.52994 * 109.47134 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47324 * 300.00280 * 16 15 14 18 18 C 1.53004 * 109.47029 * 60.00129 * 16 15 14 19 19 C 1.53000 * 109.47352 * 179.97438 * 16 15 14 20 20 C 1.50700 * 109.47236 * 179.97438 * 19 16 15 21 21 H 1.08007 * 119.99980 * 0.02562 * 20 19 16 22 22 C 1.37878 * 119.99953 * 179.97438 * 20 19 16 23 23 N 1.31510 * 120.00192 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99933 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46679 * 60.00414 * 24 22 20 26 26 H 1.48492 * 109.46970 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47167 * 300.00411 * 24 22 20 28 28 H 1.09006 * 109.47023 * 60.00196 * 1 2 3 29 29 H 1.08997 * 109.47012 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46920 * 300.00172 * 1 2 3 31 31 H 1.09000 * 109.46920 * 239.99828 * 2 1 3 32 32 H 1.09001 * 109.46555 * 119.99736 * 2 1 3 33 33 H 1.09004 * 109.46855 * 84.37622 * 7 6 5 34 34 H 1.08998 * 109.46830 * 204.37227 * 7 6 5 35 35 H 1.08997 * 109.47182 * 324.37771 * 7 6 5 36 36 H 0.97001 * 119.99976 * 30.45883 * 9 8 3 37 37 H 0.96999 * 119.99743 * 0.02562 * 14 12 10 38 38 H 1.08996 * 109.47250 * 300.00650 * 15 14 12 39 39 H 1.09008 * 109.46770 * 60.00109 * 15 14 12 40 40 H 1.09007 * 109.46865 * 59.99853 * 17 16 15 41 41 H 1.08997 * 109.47211 * 179.97438 * 17 16 15 42 42 H 1.08997 * 109.47474 * 299.99720 * 17 16 15 43 43 H 1.09002 * 109.47001 * 59.99794 * 18 16 15 44 44 H 1.09000 * 109.47417 * 179.97438 * 18 16 15 45 45 H 1.08997 * 109.47331 * 300.00242 * 18 16 15 46 46 H 1.08989 * 109.47430 * 300.00599 * 19 16 15 47 47 H 1.09007 * 109.46543 * 60.00816 * 19 16 15 48 48 H 0.96999 * 120.00417 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.3002 2.1795 -1.0745 5 7 2.6888 3.2797 -0.7582 6 6 2.7384 3.4212 0.5347 7 6 3.1716 4.6494 1.2927 8 6 2.3036 2.1896 1.0885 9 7 2.1823 1.8448 2.4442 10 6 1.8887 2.7920 3.3568 11 8 1.6412 3.9250 2.9976 12 6 1.8679 2.4480 4.8097 13 8 2.1157 1.3156 5.1687 14 7 1.5748 3.3955 5.7224 15 6 1.5538 3.0578 7.1478 16 6 1.1970 4.3032 7.9617 17 6 2.2413 5.3929 7.7111 18 6 -0.1824 4.8115 7.5377 19 6 1.1744 3.9504 9.4503 20 6 0.8235 5.1772 10.2521 21 1 0.6349 6.1148 9.7500 22 6 0.7421 5.1026 11.6264 23 7 0.9711 3.9610 12.2377 24 14 0.3064 6.6233 12.6202 25 1 -1.0320 7.1173 12.2078 26 1 0.2846 6.2809 14.0649 27 1 1.3206 7.6805 12.3776 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3284 5.3336 1.3882 34 1 3.5192 4.3604 2.2846 35 1 3.9805 5.1427 0.7537 36 1 2.3096 0.9247 2.7238 37 1 1.3771 4.3007 5.4354 38 1 0.8102 2.2811 7.3263 39 1 2.5368 2.6960 7.4500 40 1 2.2568 5.6441 6.6504 41 1 1.9867 6.2802 8.2906 42 1 3.2240 5.0308 8.0131 43 1 -0.9264 4.0352 7.7162 44 1 -0.4370 5.6985 8.1178 45 1 -0.1669 5.0627 6.4772 46 1 0.4303 3.1743 9.6286 47 1 2.1570 3.5881 9.7527 48 1 0.9142 3.9086 13.2046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357986438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:56 Heat of formation + Delta-G solvation = -45.439827 kcal Electronic energy + Delta-G solvation = -29413.325021 eV Core-core repulsion = 25277.589390 eV Total energy + Delta-G solvation = -4135.735631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.10101 -42.00077 -40.15143 -38.68132 -37.25203 -35.57150 -35.34337 -34.39525 -33.91249 -30.89678 -29.67494 -29.23955 -28.29125 -27.97121 -26.32550 -24.95967 -24.69564 -23.14527 -21.88076 -21.23928 -20.28059 -19.28192 -18.92589 -18.75001 -18.33517 -17.68624 -17.29162 -16.92049 -16.60123 -16.35482 -15.97039 -15.51403 -15.40696 -14.95374 -14.79725 -14.73002 -14.37413 -14.32778 -14.07639 -13.93137 -13.82716 -13.63282 -13.55452 -12.89630 -12.85196 -12.81946 -12.72913 -12.60543 -12.44345 -12.31809 -12.23001 -12.17950 -12.01573 -11.75817 -11.54511 -11.12992 -10.89496 -10.79031 -10.74018 -10.48583 -10.29688 -9.67043 -8.12615 -6.19366 -0.07084 0.42744 0.91511 1.12963 1.44092 1.45012 1.52234 1.96796 2.04232 2.44024 2.50954 3.14396 3.20111 3.22212 3.35450 3.70047 3.91128 4.06447 4.07583 4.20837 4.26173 4.29260 4.40008 4.62876 4.66008 4.66950 4.70327 4.72540 4.80942 4.95179 4.99982 5.00578 5.04805 5.07835 5.10939 5.12818 5.23690 5.34191 5.42815 5.51764 5.53285 5.57464 5.70713 5.80469 5.91673 6.18071 6.33582 6.53719 6.80323 6.95212 7.14373 7.48018 8.99324 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.025385 B = 0.002122 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.750915 B =13194.972844 C =13781.336109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.041 4.041 3 C -0.027 4.027 4 O 0.106 5.894 5 N -0.379 5.379 6 C 0.021 3.979 7 C -0.057 4.057 8 C 0.012 3.988 9 N -0.599 5.599 10 C 0.513 3.487 11 O -0.503 6.503 12 C 0.511 3.489 13 O -0.541 6.541 14 N -0.676 5.676 15 C 0.137 3.863 16 C -0.065 4.065 17 C -0.125 4.125 18 C -0.125 4.125 19 C 0.041 3.959 20 C -0.514 4.514 21 H 0.070 0.930 22 C -0.002 4.002 23 N -0.936 5.936 24 Si 0.954 3.046 25 H -0.268 1.268 26 H -0.291 1.291 27 H -0.269 1.269 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.436 0.564 37 H 0.419 0.581 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.055 0.945 45 H 0.063 0.937 46 H -0.008 1.008 47 H -0.008 1.008 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.676 -6.677 -26.209 27.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.078 4.078 3 C -0.094 4.094 4 O 0.044 5.956 5 N -0.086 5.086 6 C -0.139 4.139 7 C -0.115 4.115 8 C -0.086 4.086 9 N -0.251 5.251 10 C 0.295 3.705 11 O -0.376 6.376 12 C 0.291 3.709 13 O -0.419 6.419 14 N -0.330 5.330 15 C 0.014 3.986 16 C -0.065 4.065 17 C -0.183 4.183 18 C -0.183 4.183 19 C 0.003 3.997 20 C -0.552 4.552 21 H 0.088 0.912 22 C -0.199 4.199 23 N -0.577 5.577 24 Si 0.780 3.220 25 H -0.193 1.193 26 H -0.217 1.217 27 H -0.194 1.194 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.277 0.723 37 H 0.258 0.742 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.010 0.990 47 H 0.010 0.990 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.969 -5.913 -27.018 27.727 hybrid contribution -0.279 0.285 1.953 1.994 sum 1.690 -5.628 -25.064 25.744 Atomic orbital electron populations 1.21798 0.93065 1.03933 1.02009 1.20394 0.96791 0.83778 1.06882 1.24643 1.02158 0.98384 0.84194 1.84837 1.61683 1.17124 1.31995 1.73819 1.18741 1.00366 1.15721 1.23719 1.01797 0.98485 0.89928 1.20217 1.01737 0.91621 0.97888 1.18106 1.09453 0.95549 0.85513 1.42067 1.67748 1.13275 1.01963 1.20149 0.78223 0.85229 0.86926 1.90850 1.45183 1.20592 1.81020 1.19791 0.79051 0.85538 0.86532 1.90781 1.48741 1.20880 1.81485 1.45846 1.66821 1.13765 1.06524 1.21514 1.01655 0.97832 0.77573 1.20724 0.96584 0.93803 0.95417 1.21731 0.97497 0.98451 1.00594 1.21731 0.95193 1.01241 1.00101 1.18963 0.94947 0.95668 0.90115 1.21554 1.45513 0.96701 0.91440 0.91228 1.25874 0.95913 0.98563 0.99594 1.70088 1.51455 1.26867 1.09277 0.85667 0.79134 0.79979 0.77255 1.19349 1.21723 1.19356 0.92360 0.89007 0.93632 0.86572 0.86912 0.89706 0.90697 0.90461 0.72346 0.74219 0.91675 0.91692 0.91720 0.92612 0.93834 0.93854 0.92605 0.91797 0.98967 0.98981 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.90 71.98 0.71 -0.46 16 2 C -0.04 -0.29 6.50 29.85 0.19 -0.09 16 3 C -0.03 -0.41 6.77 25.16 0.17 -0.24 16 4 O 0.11 2.07 11.20 69.76 0.78 2.85 16 5 N -0.38 -8.95 12.06 -48.88 -0.59 -9.54 16 6 C 0.02 0.47 7.02 43.70 0.31 0.78 16 7 C -0.06 -1.20 8.43 71.24 0.60 -0.60 16 8 C 0.01 0.24 6.79 38.14 0.26 0.49 16 9 N -0.60 -10.76 5.45 -304.17 -1.66 -12.41 16 10 C 0.51 11.32 7.20 87.23 0.63 11.95 16 11 O -0.50 -12.32 11.98 -3.43 -0.04 -12.36 16 12 C 0.51 12.87 7.88 87.23 0.69 13.56 16 13 O -0.54 -15.82 16.48 -3.26 -0.05 -15.87 16 14 N -0.68 -17.35 4.95 -464.55 -2.30 -19.65 16 15 C 0.14 4.33 4.56 86.38 0.39 4.72 16 16 C -0.06 -2.29 0.54 -52.18 -0.03 -2.32 16 17 C -0.13 -4.06 8.05 71.98 0.58 -3.48 16 18 C -0.13 -4.07 8.05 71.98 0.58 -3.49 16 19 C 0.04 1.96 4.04 29.85 0.12 2.08 16 20 C -0.51 -26.70 7.65 25.60 0.20 -26.50 16 21 H 0.07 3.41 5.68 -2.91 -0.02 3.40 16 22 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 23 N -0.94 -55.35 13.29 21.45 0.28 -55.06 16 24 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.11 0.44 8.02 -2.39 -0.02 0.42 16 33 H 0.08 1.87 7.49 -2.38 -0.02 1.85 16 34 H 0.07 1.58 6.34 -2.39 -0.02 1.57 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.44 6.05 8.18 -92.71 -0.76 5.29 16 37 H 0.42 9.64 5.63 -92.71 -0.52 9.12 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.06 1.65 6.86 -2.38 -0.02 1.63 16 41 H 0.05 1.96 6.62 -2.39 -0.02 1.95 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 1.97 6.62 -2.39 -0.02 1.96 16 45 H 0.06 1.65 6.86 -2.39 -0.02 1.63 16 46 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 47 H -0.01 -0.44 8.14 -2.38 -0.02 -0.45 16 48 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -66.65 391.28 4.04 -62.62 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -0.28 Total: 17.80 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 5.86 Total: -3.27 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -4.26 Total: -96.66 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: 0.69 Total: -25.38 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -66.65 4.04 -62.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357986438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.177 kcal (2) G-P(sol) polarization free energy of solvation -66.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds