Wall clock time and date at job start Tue Mar 31 2020 20:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 110.53401 * 2 1 4 4 N 1.47308 * 110.60100 * 237.00054 * 2 1 3 5 5 C 1.34525 * 106.61858 * 241.24897 * 4 2 1 6 6 O 1.21543 * 123.76778 * 180.21062 * 5 4 2 7 7 N 1.33791 * 112.46042 * 0.38178 * 5 4 2 8 8 C 1.46499 * 124.17895 * 179.85904 * 7 5 4 9 9 C 1.53002 * 109.47266 * 269.70570 * 8 7 5 10 10 C 1.52994 * 109.47033 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47153 * 180.02562 * 10 9 8 12 12 O 1.21277 * 120.00330 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00135 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00258 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47269 * 184.79147 * 14 13 11 16 16 C 1.50694 * 115.55114 * 294.81128 * 15 14 13 17 17 H 1.08008 * 119.99906 * 95.20873 * 16 15 14 18 18 C 1.37875 * 120.00314 * 274.92789 * 16 15 14 19 19 N 1.31509 * 119.99913 * 355.42420 * 18 16 15 20 20 Si 1.86807 * 120.00040 * 175.41703 * 18 16 15 21 21 H 1.48494 * 109.47052 * 60.00642 * 20 18 16 22 22 H 1.48500 * 109.47055 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47106 * 300.00083 * 20 18 16 24 24 C 1.53003 * 117.49834 * 80.48431 * 15 14 13 25 25 C 1.53006 * 117.49908 * 149.14426 * 15 14 13 26 26 C 1.34771 * 111.64148 * 359.59817 * 7 5 4 27 27 O 1.21229 * 127.15558 * 180.18936 * 26 7 5 28 28 H 1.09000 * 109.47023 * 297.16915 * 1 2 3 29 29 H 1.09001 * 109.47261 * 57.17527 * 1 2 3 30 30 H 1.08999 * 109.46808 * 177.17316 * 1 2 3 31 31 H 1.08997 * 109.47215 * 182.82607 * 3 2 1 32 32 H 1.09002 * 109.47096 * 302.83061 * 3 2 1 33 33 H 1.09002 * 109.47322 * 62.82622 * 3 2 1 34 34 H 0.97004 * 126.68903 * 61.44444 * 4 2 1 35 35 H 1.08993 * 109.46981 * 149.70390 * 8 7 5 36 36 H 1.08996 * 109.46900 * 29.70592 * 8 7 5 37 37 H 1.09003 * 109.47128 * 59.99955 * 9 8 7 38 38 H 1.09002 * 109.46797 * 300.00078 * 9 8 7 39 39 H 1.09005 * 109.47336 * 59.99372 * 10 9 8 40 40 H 1.09009 * 109.47164 * 299.99994 * 10 9 8 41 41 H 0.96999 * 119.99637 * 359.97438 * 13 11 10 42 42 H 1.09001 * 109.47395 * 64.78624 * 14 13 11 43 43 H 1.09007 * 109.47080 * 304.78945 * 14 13 11 44 44 H 0.97001 * 119.99960 * 184.99387 * 19 18 16 45 45 H 1.09003 * 117.50034 * 214.99852 * 24 15 14 46 46 H 1.09002 * 117.49971 * 0.02686 * 24 15 14 47 47 H 1.08996 * 117.49810 * 359.97342 * 25 15 14 48 48 H 1.08995 * 117.50078 * 144.97442 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 7 2.0483 -0.7510 -1.1564 5 6 2.7641 -1.7761 -0.6600 6 8 3.3371 -2.5966 -1.3498 7 7 2.7716 -1.7938 0.6778 8 6 3.4688 -2.7991 1.4837 9 6 2.5254 -3.9700 1.7663 10 6 3.2533 -5.0196 2.6084 11 6 2.3243 -6.1732 2.8862 12 8 1.1914 -6.1573 2.4537 13 7 2.7521 -7.2223 3.6163 14 6 1.8493 -8.3440 3.8859 15 6 2.5355 -9.3363 4.8266 16 6 3.7505 -10.0295 4.2662 17 1 4.7365 -9.6362 4.4652 18 6 3.6039 -11.1691 3.5041 19 7 2.4129 -11.7023 3.3410 20 14 5.0970 -11.9557 2.7031 21 1 6.0720 -12.3486 3.7520 22 1 4.6746 -13.1597 1.9434 23 1 5.7313 -10.9838 1.7767 24 6 2.5357 -9.0086 6.3212 25 6 1.6465 -10.1329 5.7839 26 6 2.0633 -0.7692 1.1924 27 8 1.8885 -0.5158 2.3649 28 1 -0.3633 0.4693 0.9143 29 1 -0.3634 0.5571 -0.8636 30 1 -0.3633 -1.0264 -0.0507 31 1 3.1553 1.4130 -0.0507 32 1 1.6724 1.9685 -0.8635 33 1 1.7546 1.9377 0.9142 34 1 1.9042 -0.5447 -2.0933 35 1 3.7864 -2.3529 2.4260 36 1 4.3419 -3.1591 0.9396 37 1 2.2077 -4.4163 0.8239 38 1 1.6522 -3.6099 2.3103 39 1 3.5707 -4.5731 3.5508 40 1 4.1268 -5.3798 2.0647 41 1 3.6581 -7.2349 3.9626 42 1 1.6005 -8.8435 2.9495 43 1 0.9371 -7.9721 4.3527 44 1 2.3187 -12.5430 2.8662 45 1 3.4147 -9.2944 6.8990 46 1 2.0465 -8.0862 6.6342 47 1 0.5728 -9.9496 5.7437 48 1 1.9403 -11.1583 6.0079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431164962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:10 Heat of formation + Delta-G solvation = -70.551527 kcal Electronic energy + Delta-G solvation = -29029.567028 eV Core-core repulsion = 24892.742471 eV Total energy + Delta-G solvation = -4136.824556 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.85442 -39.15910 -38.91309 -37.10777 -36.71706 -36.03215 -33.33761 -33.26669 -31.96228 -31.67553 -28.26388 -28.09298 -26.15543 -25.17742 -24.43595 -22.86835 -21.63806 -21.14081 -20.60213 -19.71213 -19.21498 -18.29395 -17.03929 -16.92237 -16.47676 -16.07565 -16.03561 -15.65832 -15.55944 -14.94737 -14.77806 -14.63783 -14.47792 -14.06736 -14.00736 -13.65790 -13.21594 -13.15348 -12.85466 -12.80610 -12.70037 -12.44937 -12.28777 -12.13214 -11.79262 -11.65264 -11.51718 -11.02863 -10.97447 -10.95586 -10.84317 -10.54693 -10.42189 -10.23753 -10.07909 -9.87306 -9.61214 -9.27437 -9.04131 -8.49152 -8.26279 -8.08127 -6.07492 -4.17634 1.29393 1.87717 2.69951 2.72746 3.21633 3.27108 3.33274 3.34363 3.48842 3.86778 4.01673 4.21695 4.35092 4.61191 4.85638 4.89102 4.92241 4.97138 4.98180 5.08426 5.17490 5.20298 5.20601 5.31246 5.37244 5.42181 5.46394 5.53672 5.57234 5.75575 6.02782 6.04593 6.23171 6.34279 6.41017 6.47987 6.57016 6.70686 6.73852 6.88431 7.05049 7.12201 7.29125 7.40050 7.53446 7.80722 7.82011 8.30202 8.33778 8.83074 8.89269 9.49616 10.99659 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002163 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.130180 B =12941.301983 C =13702.191558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.116 3.884 3 C -0.146 4.146 4 N -0.723 5.723 5 C 0.702 3.298 6 O -0.537 6.537 7 N -0.574 5.574 8 C 0.116 3.884 9 C -0.118 4.118 10 C -0.137 4.137 11 C 0.503 3.497 12 O -0.559 6.559 13 N -0.704 5.704 14 C 0.163 3.837 15 C 0.024 3.976 16 C -0.501 4.501 17 H 0.060 0.940 18 C 0.073 3.927 19 N -0.875 5.875 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.211 4.211 25 C -0.143 4.143 26 C 0.529 3.471 27 O -0.461 6.461 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.438 0.562 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.401 0.599 42 H 0.066 0.934 43 H 0.039 0.961 44 H 0.262 0.738 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.108 26.366 -6.311 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.026 3.974 3 C -0.204 4.204 4 N -0.388 5.388 5 C 0.403 3.597 6 O -0.410 6.410 7 N -0.320 5.320 8 C -0.005 4.005 9 C -0.157 4.157 10 C -0.178 4.178 11 C 0.289 3.711 12 O -0.439 6.439 13 N -0.352 5.352 14 C 0.040 3.960 15 C 0.023 3.977 16 C -0.539 4.539 17 H 0.078 0.922 18 C -0.131 4.131 19 N -0.511 5.511 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.248 4.248 25 C -0.181 4.181 26 C 0.315 3.685 27 O -0.330 6.330 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.283 0.717 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.235 0.765 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.766 25.835 -6.401 26.627 hybrid contribution 1.111 -0.628 -0.702 1.457 sum 0.345 25.206 -7.103 26.190 Atomic orbital electron populations 1.22020 0.90028 1.04175 1.04440 1.21489 0.97372 0.94193 0.84369 1.22001 1.02041 0.91905 1.04493 1.45692 1.54899 1.29179 1.09043 1.15895 0.79869 0.82211 0.81769 1.91048 1.48034 1.41055 1.60848 1.46414 1.49414 1.28261 1.07869 1.21830 0.95558 0.87675 0.95388 1.21631 0.98369 0.94017 1.01657 1.21528 0.99391 0.95037 1.01826 1.20431 0.88245 0.83777 0.78674 1.90657 1.20446 1.80501 1.52285 1.45995 1.17267 1.19326 1.52626 1.20988 0.90111 0.84997 0.99946 1.19039 0.97276 0.95695 0.85641 1.20308 0.90919 1.10652 1.31972 0.92227 1.24996 0.95664 0.96905 0.95562 1.69978 1.21815 1.18272 1.40999 0.86684 0.82992 0.78797 0.79669 1.20282 1.21282 1.20094 1.23017 1.02361 0.98957 1.00463 1.22467 0.94500 0.95944 1.05186 1.20798 0.77305 0.80453 0.89944 1.90807 1.56375 1.69205 1.16567 0.89670 0.90194 0.91074 0.91373 0.90201 0.89681 0.71715 0.88542 0.88243 0.90319 0.90690 0.88859 0.88592 0.76471 0.91533 0.94259 0.92796 0.90393 0.91747 0.91855 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 8.98 37.16 0.33 -0.42 16 2 C 0.12 0.74 1.37 -132.09 -0.18 0.56 16 3 C -0.15 -0.59 8.99 37.16 0.33 -0.26 16 4 N -0.72 -5.03 5.91 -52.94 -0.31 -5.35 16 5 C 0.70 7.76 8.62 -88.02 -0.76 7.00 16 6 O -0.54 -7.91 17.48 5.33 0.09 -7.82 16 7 N -0.57 -6.10 2.60 -120.73 -0.31 -6.41 16 8 C 0.12 1.20 5.70 -4.04 -0.02 1.18 16 9 C -0.12 -1.52 4.83 -26.73 -0.13 -1.65 16 10 C -0.14 -1.75 5.70 -27.89 -0.16 -1.90 16 11 C 0.50 9.21 7.83 -10.98 -0.09 9.12 16 12 O -0.56 -12.41 15.98 5.56 0.09 -12.33 16 13 N -0.70 -13.49 5.48 -60.30 -0.33 -13.82 16 14 C 0.16 3.71 5.50 -4.05 -0.02 3.69 16 15 C 0.02 0.57 1.47 -155.66 -0.23 0.34 16 16 C -0.50 -12.86 8.59 -34.44 -0.30 -13.15 16 17 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 18 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 19 N -0.87 -24.40 12.65 55.43 0.70 -23.70 16 20 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.21 -4.40 9.96 -26.69 -0.27 -4.67 16 25 C -0.14 -3.30 9.14 -26.69 -0.24 -3.55 16 26 C 0.53 5.22 6.98 -10.55 -0.07 5.15 16 27 O -0.46 -5.62 17.76 5.60 0.10 -5.52 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.44 1.97 8.96 -40.82 -0.37 1.60 16 35 H 0.10 0.85 8.00 -51.93 -0.42 0.43 16 36 H 0.10 0.97 7.85 -51.93 -0.41 0.56 16 37 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 38 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 41 H 0.40 6.93 8.33 -40.82 -0.34 6.59 16 42 H 0.07 1.74 8.14 -51.93 -0.42 1.31 16 43 H 0.04 0.89 8.09 -51.92 -0.42 0.47 16 44 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 45 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 48 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 407.24 15.07 6.14 6.14 Total: -1.00 -34.06 407.24 -8.59 -42.65 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.83 Total: 7.25 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.90 Total: 3.28 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.26 Total: -49.27 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: 0.28 Total: -25.66 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.06 -8.59 -42.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431164962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.904 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds