Wall clock time and date at job start Tue Mar 31 2020 20:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 110.53401 * 2 1 4 4 N 1.47308 * 110.60100 * 237.00054 * 2 1 3 5 5 C 1.34525 * 106.61858 * 241.24897 * 4 2 1 6 6 O 1.21543 * 123.76778 * 180.21062 * 5 4 2 7 7 N 1.33791 * 112.46042 * 0.38178 * 5 4 2 8 8 C 1.46499 * 124.17895 * 179.85904 * 7 5 4 9 9 C 1.53002 * 109.47266 * 269.70570 * 8 7 5 10 10 C 1.52994 * 109.47033 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47153 * 180.02562 * 10 9 8 12 12 O 1.21277 * 120.00330 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00135 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00258 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47269 * 184.79147 * 14 13 11 16 16 C 1.50694 * 115.55114 * 294.81128 * 15 14 13 17 17 H 1.08008 * 119.99906 * 95.20873 * 16 15 14 18 18 C 1.37875 * 120.00314 * 274.92789 * 16 15 14 19 19 N 1.31509 * 119.99913 * 355.42420 * 18 16 15 20 20 Si 1.86807 * 120.00040 * 175.41703 * 18 16 15 21 21 H 1.48494 * 109.47052 * 60.00642 * 20 18 16 22 22 H 1.48500 * 109.47055 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47106 * 300.00083 * 20 18 16 24 24 C 1.53003 * 117.49834 * 80.48431 * 15 14 13 25 25 C 1.53006 * 117.49908 * 149.14426 * 15 14 13 26 26 C 1.34771 * 111.64148 * 359.59817 * 7 5 4 27 27 O 1.21229 * 127.15558 * 180.18936 * 26 7 5 28 28 H 1.09000 * 109.47023 * 297.16915 * 1 2 3 29 29 H 1.09001 * 109.47261 * 57.17527 * 1 2 3 30 30 H 1.08999 * 109.46808 * 177.17316 * 1 2 3 31 31 H 1.08997 * 109.47215 * 182.82607 * 3 2 1 32 32 H 1.09002 * 109.47096 * 302.83061 * 3 2 1 33 33 H 1.09002 * 109.47322 * 62.82622 * 3 2 1 34 34 H 0.97004 * 126.68903 * 61.44444 * 4 2 1 35 35 H 1.08993 * 109.46981 * 149.70390 * 8 7 5 36 36 H 1.08996 * 109.46900 * 29.70592 * 8 7 5 37 37 H 1.09003 * 109.47128 * 59.99955 * 9 8 7 38 38 H 1.09002 * 109.46797 * 300.00078 * 9 8 7 39 39 H 1.09005 * 109.47336 * 59.99372 * 10 9 8 40 40 H 1.09009 * 109.47164 * 299.99994 * 10 9 8 41 41 H 0.96999 * 119.99637 * 359.97438 * 13 11 10 42 42 H 1.09001 * 109.47395 * 64.78624 * 14 13 11 43 43 H 1.09007 * 109.47080 * 304.78945 * 14 13 11 44 44 H 0.97001 * 119.99960 * 184.99387 * 19 18 16 45 45 H 1.09003 * 117.50034 * 214.99852 * 24 15 14 46 46 H 1.09002 * 117.49971 * 0.02686 * 24 15 14 47 47 H 1.08996 * 117.49810 * 359.97342 * 25 15 14 48 48 H 1.08995 * 117.50078 * 144.97442 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 7 2.0483 -0.7510 -1.1564 5 6 2.7641 -1.7761 -0.6600 6 8 3.3371 -2.5966 -1.3498 7 7 2.7716 -1.7938 0.6778 8 6 3.4688 -2.7991 1.4837 9 6 2.5254 -3.9700 1.7663 10 6 3.2533 -5.0196 2.6084 11 6 2.3243 -6.1732 2.8862 12 8 1.1914 -6.1573 2.4537 13 7 2.7521 -7.2223 3.6163 14 6 1.8493 -8.3440 3.8859 15 6 2.5355 -9.3363 4.8266 16 6 3.7505 -10.0295 4.2662 17 1 4.7365 -9.6362 4.4652 18 6 3.6039 -11.1691 3.5041 19 7 2.4129 -11.7023 3.3410 20 14 5.0970 -11.9557 2.7031 21 1 6.0720 -12.3486 3.7520 22 1 4.6746 -13.1597 1.9434 23 1 5.7313 -10.9838 1.7767 24 6 2.5357 -9.0086 6.3212 25 6 1.6465 -10.1329 5.7839 26 6 2.0633 -0.7692 1.1924 27 8 1.8885 -0.5158 2.3649 28 1 -0.3633 0.4693 0.9143 29 1 -0.3634 0.5571 -0.8636 30 1 -0.3633 -1.0264 -0.0507 31 1 3.1553 1.4130 -0.0507 32 1 1.6724 1.9685 -0.8635 33 1 1.7546 1.9377 0.9142 34 1 1.9042 -0.5447 -2.0933 35 1 3.7864 -2.3529 2.4260 36 1 4.3419 -3.1591 0.9396 37 1 2.2077 -4.4163 0.8239 38 1 1.6522 -3.6099 2.3103 39 1 3.5707 -4.5731 3.5508 40 1 4.1268 -5.3798 2.0647 41 1 3.6581 -7.2349 3.9626 42 1 1.6005 -8.8435 2.9495 43 1 0.9371 -7.9721 4.3527 44 1 2.3187 -12.5430 2.8662 45 1 3.4147 -9.2944 6.8990 46 1 2.0465 -8.0862 6.6342 47 1 0.5728 -9.9496 5.7437 48 1 1.9403 -11.1583 6.0079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431164962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:09 Heat of formation + Delta-G solvation = -94.755942 kcal Electronic energy + Delta-G solvation = -29030.616610 eV Core-core repulsion = 24892.742471 eV Total energy + Delta-G solvation = -4137.874139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.61083 -40.69994 -39.77467 -38.53774 -37.79876 -36.97923 -34.94494 -34.30642 -33.95170 -32.31532 -29.44839 -28.44959 -27.85303 -26.88639 -25.26126 -23.90834 -22.93674 -22.36700 -21.38460 -21.36394 -20.90282 -19.08823 -18.38512 -17.87696 -17.73034 -17.32732 -16.86130 -16.78330 -16.71706 -16.57248 -16.31130 -15.65834 -15.45889 -15.33026 -15.17567 -14.79190 -14.50904 -14.25603 -13.77316 -13.65746 -13.64912 -13.43101 -13.28053 -13.12822 -13.01054 -12.89647 -12.83311 -12.78759 -12.57179 -12.39356 -12.03022 -11.91477 -11.87554 -11.43287 -11.19781 -11.03641 -10.94730 -10.86159 -10.52732 -10.44224 -10.04351 -9.83682 -8.09772 -6.24268 0.51718 1.13238 1.43080 1.45246 1.51038 1.74625 1.87437 2.10251 2.38611 2.44477 2.84334 3.18264 3.48777 3.51936 3.75239 3.77351 3.81012 3.88473 4.19214 4.21600 4.29764 4.38966 4.50196 4.54309 4.60164 4.63152 4.65269 4.65849 4.68651 4.72936 4.73559 4.83361 4.99463 5.02389 5.04988 5.10164 5.16729 5.18697 5.27779 5.55333 5.60731 5.70697 5.77845 5.78665 5.96960 6.31178 6.35976 6.77858 6.84879 7.05554 7.40439 7.45888 8.97111 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002163 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.130180 B =12941.301983 C =13702.191558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.122 3.878 3 C -0.141 4.141 4 N -0.703 5.703 5 C 0.697 3.303 6 O -0.580 6.580 7 N -0.580 5.580 8 C 0.118 3.882 9 C -0.109 4.109 10 C -0.124 4.124 11 C 0.498 3.502 12 O -0.604 6.604 13 N -0.699 5.699 14 C 0.178 3.822 15 C 0.003 3.997 16 C -0.504 4.504 17 H 0.067 0.933 18 C 0.021 3.979 19 N -0.910 5.910 20 Si 0.951 3.049 21 H -0.268 1.268 22 H -0.293 1.293 23 H -0.271 1.271 24 C -0.175 4.175 25 C -0.157 4.157 26 C 0.522 3.478 27 O -0.487 6.487 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.451 0.549 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.131 0.869 40 H 0.120 0.880 41 H 0.413 0.587 42 H 0.022 0.978 43 H 0.035 0.965 44 H 0.258 0.742 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.067 0.933 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.369 29.114 -6.164 29.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.032 3.968 3 C -0.199 4.199 4 N -0.368 5.368 5 C 0.397 3.603 6 O -0.457 6.457 7 N -0.325 5.325 8 C -0.003 4.003 9 C -0.148 4.148 10 C -0.164 4.164 11 C 0.286 3.714 12 O -0.486 6.486 13 N -0.349 5.349 14 C 0.054 3.946 15 C 0.002 3.998 16 C -0.541 4.541 17 H 0.085 0.915 18 C -0.179 4.179 19 N -0.547 5.547 20 Si 0.777 3.223 21 H -0.193 1.193 22 H -0.220 1.220 23 H -0.196 1.196 24 C -0.212 4.212 25 C -0.195 4.195 26 C 0.310 3.690 27 O -0.358 6.358 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.108 0.892 34 H 0.298 0.702 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.149 0.851 40 H 0.138 0.862 41 H 0.249 0.751 42 H 0.041 0.959 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.729 28.639 -6.250 29.322 hybrid contribution 0.582 -1.442 -0.724 1.716 sum 1.311 27.197 -6.975 28.107 Atomic orbital electron populations 1.22064 0.88690 1.03603 1.06097 1.21663 0.98144 0.94817 0.82137 1.22038 1.01843 0.89990 1.06051 1.45654 1.53318 1.27828 1.10017 1.16080 0.79947 0.82513 0.81716 1.91014 1.50113 1.42876 1.61670 1.46519 1.49548 1.28495 1.07951 1.21823 0.94935 0.86995 0.96561 1.21493 0.98492 0.94920 0.99874 1.21551 0.98355 0.92603 1.03930 1.21429 0.88398 0.84447 0.77136 1.90640 1.22833 1.81436 1.53737 1.45890 1.17316 1.18619 1.53045 1.20535 0.90785 0.85759 0.97564 1.19070 0.97082 0.96415 0.87199 1.20659 0.91875 1.10370 1.31238 0.91496 1.25744 0.97948 0.97873 0.96339 1.70114 1.23727 1.18603 1.42268 0.85731 0.80095 0.77662 0.78854 1.19263 1.21955 1.19578 1.22999 1.01638 0.98561 0.97992 1.22392 0.95055 0.95610 1.06440 1.21425 0.76682 0.80315 0.90575 1.90787 1.57268 1.69860 1.17836 0.89276 0.87149 0.92919 0.91746 0.87375 0.89245 0.70156 0.86483 0.87440 0.93324 0.92467 0.85099 0.86201 0.75070 0.95942 0.94669 0.93268 0.89499 0.89402 0.91495 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.98 71.98 0.65 -0.54 16 2 C 0.12 1.32 1.37 2.99 0.00 1.32 16 3 C -0.14 -0.73 8.99 71.98 0.65 -0.08 16 4 N -0.70 -8.72 5.91 -439.82 -2.60 -11.32 16 5 C 0.70 15.07 8.62 179.44 1.55 16.62 16 6 O -0.58 -17.21 17.48 -3.85 -0.07 -17.28 16 7 N -0.58 -11.96 2.60 -773.13 -2.01 -13.97 16 8 C 0.12 2.30 5.70 86.38 0.49 2.79 16 9 C -0.11 -2.77 4.83 30.59 0.15 -2.63 16 10 C -0.12 -2.94 5.70 29.85 0.17 -2.77 16 11 C 0.50 18.07 7.83 87.66 0.69 18.75 16 12 O -0.60 -27.59 15.98 -3.02 -0.05 -27.63 16 13 N -0.70 -26.38 5.48 -463.07 -2.54 -28.92 16 14 C 0.18 8.27 5.50 86.38 0.48 8.74 16 15 C 0.00 0.14 1.47 -52.93 -0.08 0.07 16 16 C -0.50 -25.64 8.59 25.60 0.22 -25.42 16 17 H 0.07 3.24 7.82 -2.91 -0.02 3.21 16 18 C 0.02 1.15 5.43 84.65 0.46 1.61 16 19 N -0.91 -52.04 12.65 21.45 0.27 -51.77 16 20 Si 0.95 42.42 29.54 68.60 2.03 44.45 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 C -0.17 -6.98 9.96 30.62 0.30 -6.68 16 25 C -0.16 -7.28 9.14 30.62 0.28 -7.00 16 26 C 0.52 9.80 6.98 87.94 0.61 10.42 16 27 O -0.49 -11.46 17.76 -2.87 -0.05 -11.51 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.45 3.16 8.96 -92.71 -0.83 2.33 16 35 H 0.12 1.80 8.00 -2.39 -0.02 1.79 16 36 H 0.11 1.94 7.85 -2.39 -0.02 1.92 16 37 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 38 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 39 H 0.13 2.19 8.14 -2.38 -0.02 2.17 16 40 H 0.12 2.35 8.14 -2.38 -0.02 2.33 16 41 H 0.41 13.52 8.33 -92.71 -0.77 12.75 16 42 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.04 1.63 8.09 -2.38 -0.02 1.61 16 44 H 0.26 14.32 8.32 -92.71 -0.77 13.55 16 45 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 46 H 0.09 3.11 8.14 -2.39 -0.02 3.10 16 47 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 48 H 0.06 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -77.14 407.24 0.97 -76.17 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: -0.62 Total: 26.61 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 6.62 Total: 15.19 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -6.88 Total: -105.99 kcal Atomic # 8 Polarization: -56.26 SS G_CDS: -0.17 Total: -56.42 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -77.14 0.97 -76.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431164962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.591 kcal (2) G-P(sol) polarization free energy of solvation -77.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds