Wall clock time and date at job start Tue Mar 31 2020 21:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 117.00130 * 2 1 4 4 O 1.20821 * 119.99910 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99829 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47177 * 85.00097 * 5 3 2 7 7 N 1.46903 * 109.47526 * 325.00048 * 5 3 2 8 8 C 1.46893 * 110.99980 * 180.02562 * 7 5 3 9 9 C 1.50704 * 109.46710 * 179.97438 * 8 7 5 10 10 O 1.21281 * 119.99977 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99818 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00005 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47009 * 90.00068 * 12 11 9 14 14 H 1.08004 * 120.00297 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00072 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00066 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00085 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47160 * 60.00285 * 17 15 13 19 19 H 1.48508 * 109.47062 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47433 * 299.99927 * 17 15 13 21 21 C 1.46499 * 120.00201 * 0.02562 * 11 9 8 22 22 C 1.53001 * 109.47330 * 89.99747 * 21 11 9 23 23 C 1.47197 * 109.47076 * 179.97438 * 22 21 11 24 24 N 9.31247 * 162.08589 * 21.08327 * 2 1 3 25 25 C 1.53003 * 109.47058 * 204.99915 * 5 3 2 26 26 C 1.53001 * 117.51964 * 236.28541 * 25 5 3 27 27 C 1.52999 * 60.00190 * 107.47982 * 26 25 5 28 28 H 1.09001 * 109.46855 * 300.00227 * 1 2 3 29 29 H 1.09005 * 109.47048 * 59.99737 * 1 2 3 30 30 H 1.08997 * 109.47001 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47344 * 179.97438 * 6 5 3 32 32 H 1.09003 * 109.47562 * 299.99765 * 6 5 3 33 33 H 1.09004 * 109.47159 * 59.99916 * 6 5 3 34 34 H 1.00898 * 110.99701 * 303.95832 * 7 5 3 35 35 H 1.09005 * 109.47379 * 299.99825 * 8 7 5 36 36 H 1.09002 * 109.47425 * 59.99854 * 8 7 5 37 37 H 1.08998 * 109.47145 * 209.99766 * 12 11 9 38 38 H 1.08993 * 109.47102 * 330.00035 * 12 11 9 39 39 H 0.97000 * 120.00414 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.47570 * 210.00211 * 21 11 9 41 41 H 1.09006 * 109.46871 * 329.99531 * 21 11 9 42 42 H 1.09001 * 109.46832 * 300.00285 * 22 21 11 43 43 H 1.09001 * 109.46672 * 60.00335 * 22 21 11 44 44 H 1.09002 * 115.54973 * 90.58324 * 25 5 3 45 45 H 1.09001 * 117.49733 * 214.97413 * 26 25 5 46 46 H 1.08995 * 117.49577 * 359.97438 * 26 25 5 47 47 H 1.09004 * 117.50150 * 252.51496 * 27 26 25 48 48 H 1.09004 * 117.49681 * 107.48417 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0817 1.1762 -1.4378 7 7 4.1151 0.1673 0.7934 8 6 5.5831 0.2124 0.8157 9 6 6.1085 -0.9360 1.6381 10 8 5.3360 -1.7155 2.1543 11 7 7.4368 -1.0973 1.7991 12 6 7.9476 -2.2140 2.5981 13 6 8.1650 -3.4104 1.7080 14 1 7.9443 -3.3457 0.6527 15 6 8.6446 -4.5881 2.2410 16 7 8.9128 -4.6672 3.5260 17 14 8.9134 -6.0714 1.1378 18 1 9.8977 -5.7295 0.0796 19 1 9.4312 -7.2033 1.9477 20 1 7.6256 -6.4605 0.5089 21 6 8.3700 -0.1560 1.1751 22 6 8.6520 0.9977 2.1396 23 6 9.5901 1.9431 1.5128 24 7 10.3130 2.6727 1.0304 25 6 4.0075 2.6069 0.6091 26 6 4.9070 3.5089 -0.2384 27 6 3.4427 3.8879 -0.0081 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 5.1701 1.2337 -1.4383 32 1 3.7674 0.2272 -1.8723 33 1 3.6746 1.9980 -2.0269 34 1 3.7391 0.1726 1.7297 35 1 5.9646 0.1351 -0.2025 36 1 5.9111 1.1541 1.2560 37 1 8.8927 -1.9281 3.0597 38 1 7.2253 -2.4653 3.3747 39 1 9.2505 -5.4956 3.9010 40 1 9.3023 -0.6699 0.9409 41 1 7.9312 0.2363 0.2577 42 1 7.7197 1.5116 2.3737 43 1 9.0909 0.6053 3.0570 44 1 4.1747 2.5985 1.6862 45 1 5.6660 4.0939 0.2811 46 1 5.1849 3.1532 -1.2305 47 1 2.7570 3.7816 -0.8488 48 1 3.2383 4.7223 0.6629 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535051441.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:57 Heat of formation + Delta-G solvation = -71.429821 kcal Electronic energy + Delta-G solvation = -30219.696223 eV Core-core repulsion = 26082.833581 eV Total energy + Delta-G solvation = -4136.862642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99557 -40.71031 -39.35329 -37.95304 -37.34515 -36.64261 -35.75952 -34.78644 -32.13538 -31.56461 -29.51306 -28.76438 -27.63570 -25.50928 -25.23550 -23.84921 -23.34115 -22.94454 -20.30509 -19.87096 -19.02668 -18.61194 -18.28706 -17.91950 -17.62950 -17.29251 -17.10759 -16.81571 -16.32162 -16.06593 -15.67781 -15.62528 -15.03836 -14.80025 -14.74983 -14.35488 -14.21582 -14.09139 -13.80001 -13.59324 -13.49181 -13.47347 -13.14598 -13.08694 -12.90025 -12.82236 -12.68299 -12.62332 -12.49082 -12.44230 -12.24338 -12.11814 -11.81086 -11.71929 -11.63374 -11.55401 -11.19642 -10.93756 -10.53577 -10.47256 -9.49345 -9.35086 -8.13220 -6.24836 1.08956 1.43401 1.46574 1.52805 1.72000 1.75863 1.90334 1.96681 2.28253 2.47585 2.90763 3.00722 3.18153 3.24963 3.54659 3.75491 3.86784 3.90292 4.05824 4.10730 4.17479 4.18341 4.29170 4.33302 4.36623 4.43797 4.50190 4.66218 4.66634 4.73599 4.81134 4.89179 4.89706 5.02683 5.08280 5.11274 5.16382 5.28370 5.32644 5.39856 5.44111 5.66123 5.75569 5.95664 6.14551 6.19012 6.66134 6.77018 6.82132 6.88886 7.40587 7.61364 8.93069 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009914 B = 0.003603 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.554105 B = 7769.285959 C = 9920.904630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.353 6.353 3 C 0.472 3.528 4 O -0.519 6.519 5 C 0.164 3.836 6 C -0.146 4.146 7 N -0.662 5.662 8 C 0.051 3.949 9 C 0.501 3.499 10 O -0.576 6.576 11 N -0.597 5.597 12 C 0.261 3.739 13 C -0.538 4.538 14 H 0.054 0.946 15 C 0.012 3.988 16 N -0.927 5.927 17 Si 0.955 3.045 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.280 1.280 21 C 0.112 3.888 22 C -0.039 4.039 23 C 0.246 3.754 24 N -0.488 5.488 25 C -0.199 4.199 26 C -0.158 4.158 27 C -0.154 4.154 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.349 0.651 35 H 0.124 0.876 36 H 0.098 0.902 37 H 0.034 0.966 38 H 0.003 0.997 39 H 0.264 0.736 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.136 0.864 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.115 0.885 47 H 0.091 0.909 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 16.764 -8.375 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.315 3.685 4 O -0.408 6.408 5 C 0.072 3.928 6 C -0.203 4.203 7 N -0.295 5.295 8 C -0.080 4.080 9 C 0.290 3.710 10 O -0.455 6.455 11 N -0.329 5.329 12 C 0.140 3.860 13 C -0.577 4.577 14 H 0.072 0.928 15 C -0.187 4.187 16 N -0.567 5.567 17 Si 0.780 3.220 18 H -0.187 1.187 19 H -0.210 1.210 20 H -0.206 1.206 21 C -0.012 4.012 22 C -0.080 4.080 23 C -0.071 4.071 24 N -0.166 5.166 25 C -0.219 4.219 26 C -0.194 4.194 27 C -0.192 4.192 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.169 0.831 35 H 0.141 0.859 36 H 0.115 0.885 37 H 0.052 0.948 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.154 0.846 43 H 0.136 0.864 44 H 0.129 0.871 45 H 0.128 0.872 46 H 0.133 0.867 47 H 0.109 0.891 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.583 17.126 -9.202 21.675 hybrid contribution -0.316 -0.834 0.879 1.252 sum -9.898 16.292 -8.323 20.801 Atomic orbital electron populations 1.23511 0.75493 1.05241 1.02462 1.86675 1.24281 1.32991 1.82843 1.23866 0.91998 0.81174 0.71449 1.90635 1.67153 1.36715 1.46249 1.20261 0.85648 0.89227 0.97712 1.22088 1.03698 1.03373 0.91183 1.60228 1.05998 1.43240 1.20083 1.21972 0.88191 0.95890 1.01917 1.21114 0.82031 0.86768 0.81126 1.90691 1.57084 1.47182 1.50549 1.48048 1.05343 1.28015 1.51476 1.18766 0.93524 0.83532 0.90190 1.21750 1.42848 0.97684 0.95381 0.92755 1.25693 0.95412 1.01386 0.96252 1.70013 1.45831 1.28040 1.12805 0.85660 0.78384 0.78926 0.78990 1.18743 1.20959 1.20588 1.21538 0.95293 0.88829 0.95558 1.19838 0.96981 0.91781 0.99401 1.29057 0.92915 0.92848 0.92312 1.81207 1.11931 1.12573 1.10841 1.22914 1.08584 0.90854 0.99519 1.23330 0.93584 1.00931 1.01565 1.22846 0.96625 0.96648 1.03094 0.92028 0.91512 0.86150 0.88188 0.91372 0.90328 0.83126 0.85878 0.88468 0.94822 0.97903 0.92691 0.89869 0.87269 0.84643 0.86408 0.87149 0.87240 0.86724 0.89072 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.35 -8.70 10.27 -51.44 -0.53 -9.23 16 3 C 0.47 11.15 6.73 71.24 0.48 11.63 16 4 O -0.52 -13.40 13.74 21.98 0.30 -13.10 16 5 C 0.16 3.16 0.78 2.78 0.00 3.16 16 6 C -0.15 -2.27 6.79 71.98 0.49 -1.78 16 7 N -0.66 -15.79 5.47 -477.86 -2.61 -18.41 16 8 C 0.05 1.09 4.04 85.56 0.35 1.43 16 9 C 0.50 16.99 7.71 87.66 0.68 17.67 16 10 O -0.58 -26.45 15.78 -3.03 -0.05 -26.50 16 11 N -0.60 -20.07 2.46 -826.15 -2.03 -22.10 16 12 C 0.26 12.24 5.16 85.63 0.44 12.68 16 13 C -0.54 -28.53 9.39 25.60 0.24 -28.29 16 14 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 15 C 0.01 0.63 5.46 84.65 0.46 1.10 16 16 N -0.93 -53.35 13.29 21.45 0.28 -53.07 16 17 Si 0.95 43.31 29.54 68.60 2.03 45.34 16 18 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 C 0.11 2.46 5.17 86.38 0.45 2.91 16 22 C -0.04 -0.62 6.03 28.79 0.17 -0.44 16 23 C 0.25 4.79 15.43 89.46 1.38 6.17 16 24 N -0.49 -12.43 18.53 19.99 0.37 -12.06 16 25 C -0.20 -3.15 3.88 -10.79 -0.04 -3.19 16 26 C -0.16 -1.82 9.50 30.59 0.29 -1.53 16 27 C -0.15 -2.44 8.53 30.60 0.26 -2.18 16 28 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 29 H 0.07 1.07 8.13 -2.38 -0.02 1.05 16 30 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.10 1.15 5.49 -2.39 -0.01 1.14 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.05 7.18 -2.39 -0.02 1.03 16 34 H 0.35 9.17 8.41 -89.70 -0.75 8.42 16 35 H 0.12 2.14 5.56 -2.38 -0.01 2.12 16 36 H 0.10 1.37 6.08 -2.39 -0.01 1.36 16 37 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 38 H 0.00 0.16 7.42 -2.39 -0.02 0.14 16 39 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 40 H 0.08 2.07 8.07 -2.39 -0.02 2.05 16 41 H 0.11 1.67 6.44 -2.38 -0.02 1.66 16 42 H 0.14 1.40 7.22 -2.39 -0.02 1.38 16 43 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.11 1.74 8.08 -2.39 -0.02 1.72 16 45 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.11 1.09 5.82 -2.39 -0.01 1.08 16 47 H 0.09 1.67 6.80 -2.39 -0.02 1.65 16 48 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -76.39 399.31 4.85 -71.54 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.24 Total: 16.58 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: 6.84 Total: 21.00 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -3.99 Total: -105.63 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -0.27 Total: -48.82 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -76.39 4.85 -71.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535051441.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.110 kcal (2) G-P(sol) polarization free energy of solvation -76.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds