Wall clock time and date at job start Tue Mar 31 2020 21:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47155 * 2 1 4 4 C 1.38125 * 126.29131 * 269.97569 * 3 2 1 5 5 C 1.47285 * 126.43080 * 359.77001 * 4 3 2 6 6 O 1.21523 * 119.99767 * 0.02562 * 5 4 3 7 7 O 1.34757 * 119.99957 * 179.97438 * 5 4 3 8 8 C 1.45204 * 116.99684 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.46858 * 180.02562 * 8 7 5 10 10 O 1.21290 * 119.99962 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99926 * 179.97438 * 9 8 7 12 12 C 1.37102 * 119.99908 * 180.02562 * 11 9 8 13 13 H 1.07991 * 119.99912 * 0.02562 * 12 11 9 14 14 C 1.38950 * 119.99549 * 180.02562 * 12 11 9 15 15 N 1.31414 * 120.00450 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99601 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47194 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46917 * 120.00279 * 16 14 12 19 19 H 1.48504 * 109.47343 * 240.00081 * 16 14 12 20 20 C 1.41347 * 107.14551 * 180.02562 * 4 3 2 21 21 N 1.30434 * 108.01298 * 0.02562 * 20 4 3 22 22 N 1.34221 * 126.29684 * 90.01249 * 3 2 1 23 23 C 1.46498 * 125.74232 * 359.94959 * 22 3 2 24 24 C 1.52995 * 109.47204 * 89.99996 * 23 22 3 25 25 C 1.52997 * 109.47149 * 179.97438 * 24 23 22 26 26 C 1.53010 * 109.47262 * 174.99649 * 25 24 23 27 27 C 1.52998 * 109.47354 * 294.99469 * 25 24 23 28 28 H 1.09001 * 109.46667 * 60.00464 * 1 2 3 29 29 H 1.09004 * 109.46800 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47204 * 300.00449 * 1 2 3 31 31 H 1.09003 * 109.47234 * 240.00046 * 2 1 3 32 32 H 1.08997 * 109.47377 * 119.99641 * 2 1 3 33 33 H 1.09002 * 109.47025 * 300.00127 * 8 7 5 34 34 H 1.09003 * 109.46916 * 60.00443 * 8 7 5 35 35 H 0.97001 * 120.00163 * 0.02562 * 11 9 8 36 36 H 0.96996 * 120.00037 * 179.97438 * 15 14 12 37 37 H 1.07997 * 125.99729 * 179.97438 * 20 4 3 38 38 H 1.09001 * 109.46702 * 209.99804 * 23 22 3 39 39 H 1.08996 * 109.47376 * 329.99388 * 23 22 3 40 40 H 1.09001 * 109.47134 * 299.99543 * 24 23 22 41 41 H 1.09002 * 109.47384 * 59.99851 * 24 23 22 42 42 H 1.08996 * 109.47211 * 54.99770 * 25 24 23 43 43 H 1.09002 * 109.46807 * 60.00363 * 26 25 24 44 44 H 1.09002 * 109.47135 * 179.97438 * 26 25 24 45 45 H 1.08994 * 109.47020 * 300.00054 * 26 25 24 46 46 H 1.09002 * 109.47579 * 179.97438 * 27 25 24 47 47 H 1.08996 * 109.47208 * 300.00303 * 27 25 24 48 48 H 1.09001 * 109.46983 * 59.99947 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3053 2.1915 -1.1133 5 6 2.1645 1.7773 -2.5197 6 8 1.7733 0.6583 -2.7873 7 8 2.4686 2.6395 -3.5097 8 6 2.3066 2.1629 -4.8717 9 6 2.6917 3.2557 -5.8353 10 8 3.0664 4.3302 -5.4155 11 7 2.6208 3.0387 -7.1636 12 6 2.9718 4.0327 -8.0403 13 1 3.3054 4.9894 -7.6665 14 6 2.8981 3.8091 -9.4097 15 7 2.4917 2.6451 -9.8645 16 14 3.3755 5.1636 -10.6041 17 1 3.7937 6.3690 -9.8443 18 1 4.5004 4.6993 -11.4551 19 1 2.2114 5.4996 -11.4627 20 6 2.7508 3.4503 -0.6497 21 7 2.7425 3.4258 0.6544 22 7 2.2974 2.1699 1.0818 23 6 2.1461 1.7442 2.4754 24 6 3.4531 1.1142 2.9609 25 6 3.2953 0.6703 4.4166 26 6 4.5572 -0.0708 4.8635 27 6 3.0837 1.8983 5.3043 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.9469 1.2955 -5.0317 34 1 1.2664 1.8822 -5.0370 35 1 2.3215 2.1793 -7.4994 36 1 2.4399 2.4892 -10.8205 37 1 3.0470 4.2855 -1.2670 38 1 1.9070 2.6083 3.0952 39 1 1.3416 1.0124 2.5464 40 1 3.6922 0.2501 2.3411 41 1 4.2577 1.8462 2.8899 42 1 2.4347 0.0070 4.5028 43 1 5.4178 0.5926 4.7772 44 1 4.4449 -0.3867 5.9007 45 1 4.7079 -0.9456 4.2311 46 1 2.9708 1.5820 6.3413 47 1 3.9443 2.5616 5.2180 48 1 2.1848 2.4262 4.9859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755594657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:01 Heat of formation + Delta-G solvation = -72.979839 kcal Electronic energy + Delta-G solvation = -28593.944856 eV Core-core repulsion = 24457.015000 eV Total energy + Delta-G solvation = -4136.929856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72249 -39.75131 -38.01789 -37.49858 -35.93281 -34.42589 -33.93698 -33.26804 -31.32913 -29.78475 -29.31334 -28.08139 -27.68701 -25.16503 -24.37168 -23.78703 -22.63783 -20.88278 -20.52938 -19.58633 -19.39850 -18.00050 -17.77488 -16.47266 -16.25644 -16.19707 -15.94224 -15.44663 -15.20386 -14.96357 -14.56237 -14.48772 -14.26473 -13.91923 -13.89521 -13.77168 -13.51960 -13.23803 -12.89046 -12.78679 -12.60313 -12.35442 -12.17326 -12.07023 -11.95963 -11.79653 -11.58188 -11.54490 -11.41219 -11.25869 -11.16746 -11.11598 -10.80117 -10.35528 -10.28027 -10.27371 -10.15462 -9.57132 -9.56855 -8.81682 -8.45525 -8.03231 -6.45650 -3.87315 1.25853 2.02799 2.06426 2.95524 3.15062 3.26898 3.30358 3.34920 3.80328 4.08033 4.12183 4.17544 4.23161 4.37504 4.41066 4.62576 4.72038 4.78706 4.87242 4.91675 4.99575 5.09664 5.13264 5.14980 5.18655 5.20085 5.27600 5.33420 5.39314 5.44884 5.48086 5.49093 5.60353 5.66460 5.72207 5.77499 5.79073 5.83704 5.91265 5.97160 6.13695 6.35493 6.61123 6.79186 7.41843 7.52354 7.96679 8.12106 8.54175 9.12105 9.44944 9.95172 10.71776 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.026431 B = 0.001885 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.119958 B =14846.913913 C =15379.955995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C 0.166 3.834 4 C -0.277 4.277 5 C 0.541 3.459 6 O -0.525 6.525 7 O -0.322 6.322 8 C 0.064 3.936 9 C 0.440 3.560 10 O -0.575 6.575 11 N -0.555 5.555 12 C -0.300 4.300 13 H 0.106 0.894 14 C 0.024 3.976 15 N -0.898 5.898 16 Si 0.933 3.067 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.110 3.890 21 N -0.301 5.301 22 N -0.358 5.358 23 C 0.126 3.874 24 C -0.134 4.134 25 C -0.092 4.092 26 C -0.148 4.148 27 C -0.153 4.153 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.395 0.605 36 H 0.273 0.727 37 H 0.202 0.798 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 -8.792 28.211 29.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C 0.034 3.966 4 C -0.290 4.290 5 C 0.386 3.614 6 O -0.416 6.416 7 O -0.236 6.236 8 C -0.014 4.014 9 C 0.225 3.775 10 O -0.459 6.459 11 N -0.192 5.192 12 C -0.430 4.430 13 H 0.124 0.876 14 C -0.178 4.178 15 N -0.539 5.539 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.078 4.078 21 N -0.119 5.119 22 N -0.136 5.136 23 C 0.006 3.994 24 C -0.172 4.172 25 C -0.112 4.112 26 C -0.205 4.205 27 C -0.211 4.211 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.228 0.772 36 H 0.082 0.918 37 H 0.218 0.782 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.652 -7.779 29.413 30.469 hybrid contribution -0.123 -0.440 -1.757 1.816 sum -1.775 -8.219 27.656 28.906 Atomic orbital electron populations 1.21659 0.93251 1.02654 1.02386 1.20511 0.97251 0.88335 1.05006 1.21466 0.94275 0.94626 0.86270 1.19050 1.22465 0.97169 0.90324 1.19968 0.73580 0.82513 0.85293 1.90767 1.44891 1.21215 1.84727 1.86588 1.78550 1.43128 1.15316 1.22705 1.02727 0.97572 0.78406 1.19357 0.86079 0.88859 0.83211 1.90558 1.51574 1.26246 1.77504 1.41709 1.58191 1.16001 1.03324 1.19777 1.41456 0.95482 0.86246 0.87574 1.25301 0.97121 0.97686 0.97726 1.69623 1.46649 1.22447 1.15157 0.85750 0.78086 0.80513 0.79701 1.19108 1.20676 1.20679 1.24332 0.94711 0.97384 0.91387 1.77266 1.22391 0.98940 1.13318 1.48523 1.49395 1.09783 1.05871 1.21944 0.99129 1.01178 0.77171 1.22101 0.97242 1.01461 0.96429 1.21053 0.99151 0.97457 0.93496 1.21830 0.97228 1.00211 1.01244 1.21943 1.02070 0.97535 0.99505 0.91497 0.91282 0.93146 0.86954 0.90560 0.89600 0.89594 0.77177 0.91753 0.78165 0.87985 0.88699 0.91074 0.90479 0.90807 0.92480 0.92382 0.92509 0.92411 0.92297 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.07 -0.67 5.40 -27.88 -0.15 -0.82 16 3 C 0.17 1.98 6.26 -81.59 -0.51 1.47 16 4 C -0.28 -4.09 6.13 -105.08 -0.64 -4.73 16 5 C 0.54 9.26 7.95 34.41 0.27 9.53 16 6 O -0.52 -9.19 14.63 -19.28 -0.28 -9.48 16 7 O -0.32 -6.26 9.60 -47.33 -0.45 -6.72 16 8 C 0.06 1.24 5.95 36.01 0.21 1.46 16 9 C 0.44 10.77 7.86 -10.99 -0.09 10.68 16 10 O -0.57 -16.14 16.08 -14.11 -0.23 -16.37 16 11 N -0.55 -14.18 5.29 -10.96 -0.06 -14.24 16 12 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 13 H 0.11 3.09 7.16 -52.49 -0.38 2.71 16 14 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 15 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 16 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 C 0.11 1.55 11.87 -16.96 -0.20 1.35 16 21 N -0.30 -4.01 12.50 30.87 0.39 -3.63 16 22 N -0.36 -3.89 3.58 -56.60 -0.20 -4.10 16 23 C 0.13 0.87 5.78 -4.05 -0.02 0.84 16 24 C -0.13 -0.82 5.01 -26.73 -0.13 -0.95 16 25 C -0.09 -0.41 2.92 -90.62 -0.26 -0.68 16 26 C -0.15 -0.68 9.19 37.16 0.34 -0.34 16 27 C -0.15 -0.68 8.95 37.16 0.33 -0.35 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.11 1.25 6.49 -51.93 -0.34 0.91 16 32 H 0.08 0.50 7.70 -51.93 -0.40 0.10 16 33 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 35 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.20 2.65 8.06 -52.49 -0.42 2.23 16 38 H 0.10 0.65 6.56 -51.93 -0.34 0.31 16 39 H 0.09 0.46 7.62 -51.93 -0.40 0.06 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 47 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.06 0.24 6.56 -51.93 -0.34 -0.10 16 LS Contribution 406.14 15.07 6.12 6.12 Total: -1.00 -33.49 406.14 -7.31 -40.79 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.57 Total: 6.63 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -0.73 Total: 8.65 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.85 Total: -45.51 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.96 Total: -32.56 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.49 -7.31 -40.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755594657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.187 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds