Wall clock time and date at job start Tue Mar 31 2020 21:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47155 * 2 1 4 4 C 1.38125 * 126.29131 * 269.97569 * 3 2 1 5 5 C 1.47285 * 126.43080 * 359.77001 * 4 3 2 6 6 O 1.21523 * 119.99767 * 0.02562 * 5 4 3 7 7 O 1.34757 * 119.99957 * 179.97438 * 5 4 3 8 8 C 1.45204 * 116.99684 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.46858 * 180.02562 * 8 7 5 10 10 O 1.21290 * 119.99962 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99926 * 179.97438 * 9 8 7 12 12 C 1.37102 * 119.99908 * 180.02562 * 11 9 8 13 13 H 1.07991 * 119.99912 * 0.02562 * 12 11 9 14 14 C 1.38950 * 119.99549 * 180.02562 * 12 11 9 15 15 N 1.31414 * 120.00450 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99601 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47194 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46917 * 120.00279 * 16 14 12 19 19 H 1.48504 * 109.47343 * 240.00081 * 16 14 12 20 20 C 1.41347 * 107.14551 * 180.02562 * 4 3 2 21 21 N 1.30434 * 108.01298 * 0.02562 * 20 4 3 22 22 N 1.34221 * 126.29684 * 90.01249 * 3 2 1 23 23 C 1.46498 * 125.74232 * 359.94959 * 22 3 2 24 24 C 1.52995 * 109.47204 * 89.99996 * 23 22 3 25 25 C 1.52997 * 109.47149 * 179.97438 * 24 23 22 26 26 C 1.53010 * 109.47262 * 174.99649 * 25 24 23 27 27 C 1.52998 * 109.47354 * 294.99469 * 25 24 23 28 28 H 1.09001 * 109.46667 * 60.00464 * 1 2 3 29 29 H 1.09004 * 109.46800 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47204 * 300.00449 * 1 2 3 31 31 H 1.09003 * 109.47234 * 240.00046 * 2 1 3 32 32 H 1.08997 * 109.47377 * 119.99641 * 2 1 3 33 33 H 1.09002 * 109.47025 * 300.00127 * 8 7 5 34 34 H 1.09003 * 109.46916 * 60.00443 * 8 7 5 35 35 H 0.97001 * 120.00163 * 0.02562 * 11 9 8 36 36 H 0.96996 * 120.00037 * 179.97438 * 15 14 12 37 37 H 1.07997 * 125.99729 * 179.97438 * 20 4 3 38 38 H 1.09001 * 109.46702 * 209.99804 * 23 22 3 39 39 H 1.08996 * 109.47376 * 329.99388 * 23 22 3 40 40 H 1.09001 * 109.47134 * 299.99543 * 24 23 22 41 41 H 1.09002 * 109.47384 * 59.99851 * 24 23 22 42 42 H 1.08996 * 109.47211 * 54.99770 * 25 24 23 43 43 H 1.09002 * 109.46807 * 60.00363 * 26 25 24 44 44 H 1.09002 * 109.47135 * 179.97438 * 26 25 24 45 45 H 1.08994 * 109.47020 * 300.00054 * 26 25 24 46 46 H 1.09002 * 109.47579 * 179.97438 * 27 25 24 47 47 H 1.08996 * 109.47208 * 300.00303 * 27 25 24 48 48 H 1.09001 * 109.46983 * 59.99947 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3053 2.1915 -1.1133 5 6 2.1645 1.7773 -2.5197 6 8 1.7733 0.6583 -2.7873 7 8 2.4686 2.6395 -3.5097 8 6 2.3066 2.1629 -4.8717 9 6 2.6917 3.2557 -5.8353 10 8 3.0664 4.3302 -5.4155 11 7 2.6208 3.0387 -7.1636 12 6 2.9718 4.0327 -8.0403 13 1 3.3054 4.9894 -7.6665 14 6 2.8981 3.8091 -9.4097 15 7 2.4917 2.6451 -9.8645 16 14 3.3755 5.1636 -10.6041 17 1 3.7937 6.3690 -9.8443 18 1 4.5004 4.6993 -11.4551 19 1 2.2114 5.4996 -11.4627 20 6 2.7508 3.4503 -0.6497 21 7 2.7425 3.4258 0.6544 22 7 2.2974 2.1699 1.0818 23 6 2.1461 1.7442 2.4754 24 6 3.4531 1.1142 2.9609 25 6 3.2953 0.6703 4.4166 26 6 4.5572 -0.0708 4.8635 27 6 3.0837 1.8983 5.3043 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.9469 1.2955 -5.0317 34 1 1.2664 1.8822 -5.0370 35 1 2.3215 2.1793 -7.4994 36 1 2.4399 2.4892 -10.8205 37 1 3.0470 4.2855 -1.2670 38 1 1.9070 2.6083 3.0952 39 1 1.3416 1.0124 2.5464 40 1 3.6922 0.2501 2.3411 41 1 4.2577 1.8462 2.8899 42 1 2.4347 0.0070 4.5028 43 1 5.4178 0.5926 4.7772 44 1 4.4449 -0.3867 5.9007 45 1 4.7079 -0.9456 4.2311 46 1 2.9708 1.5820 6.3413 47 1 3.9443 2.5616 5.2180 48 1 2.1848 2.4262 4.9859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755594657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:00 Heat of formation + Delta-G solvation = -92.435004 kcal Electronic energy + Delta-G solvation = -28594.788495 eV Core-core repulsion = 24457.015000 eV Total energy + Delta-G solvation = -4137.773495 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.71589 -41.18243 -39.91230 -37.98806 -37.37718 -36.01314 -35.23061 -34.02129 -33.39679 -30.90697 -30.11647 -29.51096 -28.03149 -26.71413 -25.60267 -24.48132 -23.75391 -21.95753 -21.38294 -20.95199 -20.48217 -20.03732 -18.98192 -17.79524 -17.65496 -17.56762 -16.94723 -16.67015 -16.38177 -16.02106 -15.75487 -15.64759 -15.54383 -15.28988 -14.79043 -14.61328 -14.48202 -14.29916 -13.89551 -13.76539 -13.62529 -13.54711 -13.36616 -13.13059 -12.93224 -12.80400 -12.70602 -12.45090 -12.44500 -12.24656 -12.10272 -11.92093 -11.82243 -11.75083 -11.59923 -11.56616 -11.51402 -11.42587 -10.48790 -10.46886 -10.09958 -9.85523 -8.51074 -6.01434 0.22609 0.93213 1.13271 1.35606 1.43048 1.55547 1.66211 1.88444 2.08958 2.31791 3.09049 3.14490 3.35264 3.42727 3.70919 3.77583 3.81902 3.93114 3.98326 4.10143 4.20328 4.20748 4.25335 4.26362 4.28470 4.37523 4.45905 4.57903 4.63090 4.73903 4.76830 4.85630 4.95633 4.99003 5.03907 5.07439 5.10832 5.26825 5.28579 5.30159 5.38343 5.41870 5.44221 5.48347 5.79642 5.91075 6.39753 6.48732 6.77261 7.04739 7.41807 7.95703 8.66244 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.026431 B = 0.001885 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.119958 B =14846.913913 C =15379.955995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 C 0.182 3.818 4 C -0.311 4.311 5 C 0.541 3.459 6 O -0.533 6.533 7 O -0.342 6.342 8 C 0.075 3.925 9 C 0.437 3.563 10 O -0.617 6.617 11 N -0.558 5.558 12 C -0.337 4.337 13 H 0.084 0.916 14 C -0.009 4.009 15 N -0.915 5.915 16 Si 0.998 3.002 17 H -0.272 1.272 18 H -0.269 1.269 19 H -0.269 1.269 20 C 0.100 3.900 21 N -0.314 5.314 22 N -0.346 5.346 23 C 0.116 3.884 24 C -0.127 4.127 25 C -0.086 4.086 26 C -0.149 4.149 27 C -0.155 4.155 28 H 0.037 0.963 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.400 0.600 36 H 0.281 0.719 37 H 0.198 0.802 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.046 0.954 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.046 0.954 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.813 -10.330 29.663 31.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 C 0.047 3.953 4 C -0.324 4.324 5 C 0.388 3.612 6 O -0.424 6.424 7 O -0.257 6.257 8 C -0.002 4.002 9 C 0.224 3.776 10 O -0.504 6.504 11 N -0.196 5.196 12 C -0.466 4.466 13 H 0.102 0.898 14 C -0.210 4.210 15 N -0.555 5.555 16 Si 0.821 3.179 17 H -0.197 1.197 18 H -0.194 1.194 19 H -0.194 1.194 20 C -0.088 4.088 21 N -0.133 5.133 22 N -0.124 5.124 23 C -0.003 4.003 24 C -0.166 4.166 25 C -0.105 4.105 26 C -0.207 4.207 27 C -0.212 4.212 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.235 0.765 36 H 0.090 0.910 37 H 0.215 0.785 38 H 0.127 0.873 39 H 0.144 0.856 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.111 0.889 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.065 0.935 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.471 -9.348 30.889 32.367 hybrid contribution 0.124 -0.016 -2.077 2.080 sum -2.348 -9.364 28.812 30.387 Atomic orbital electron populations 1.21653 0.92316 1.03830 1.01830 1.20636 0.97870 0.86481 1.05953 1.21836 0.92456 0.95411 0.85578 1.19114 1.25201 0.98301 0.89766 1.20288 0.73166 0.82174 0.85557 1.90748 1.45524 1.21304 1.84842 1.86584 1.79287 1.44360 1.15458 1.22487 1.04160 0.95681 0.77895 1.20127 0.84633 0.89379 0.83450 1.90523 1.53231 1.28400 1.78230 1.41732 1.58256 1.15852 1.03740 1.19760 1.43789 0.95597 0.87497 0.89835 1.26118 0.96252 0.99982 0.98614 1.69678 1.46193 1.23601 1.16046 0.84796 0.78307 0.77429 0.77334 1.19666 1.19432 1.19433 1.24342 0.95153 0.97458 0.91839 1.77213 1.22737 1.00528 1.12783 1.48871 1.47677 1.08713 1.07131 1.22410 1.00536 1.02390 0.74923 1.22038 0.96100 1.00767 0.97653 1.21029 0.99754 0.97646 0.92049 1.21845 0.96974 1.00047 1.01801 1.21958 1.01764 0.97419 1.00044 0.94339 0.89258 0.91415 0.88675 0.86916 0.87565 0.87566 0.76538 0.90990 0.78516 0.87269 0.85554 0.91013 0.92564 0.88946 0.93492 0.91604 0.92394 0.91670 0.93472 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.89 71.98 0.71 -1.27 16 2 C -0.07 -1.14 5.40 29.85 0.16 -0.98 16 3 C 0.18 4.10 6.26 42.17 0.26 4.36 16 4 C -0.31 -9.24 6.13 -20.16 -0.12 -9.36 16 5 C 0.54 18.75 7.95 70.20 0.56 19.31 16 6 O -0.53 -18.55 14.63 19.76 0.29 -18.26 16 7 O -0.34 -13.63 9.60 -50.28 -0.48 -14.12 16 8 C 0.08 2.95 5.95 71.24 0.42 3.38 16 9 C 0.44 21.99 7.86 87.66 0.69 22.68 16 10 O -0.62 -36.03 16.08 15.74 0.25 -35.78 16 11 N -0.56 -29.20 5.29 -306.99 -1.62 -30.82 16 12 C -0.34 -19.25 9.68 84.04 0.81 -18.44 16 13 H 0.08 5.07 7.16 -2.92 -0.02 5.05 16 14 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 15 N -0.92 -49.03 13.05 21.66 0.28 -48.74 16 16 Si 1.00 42.63 29.55 68.60 2.03 44.66 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 20 C 0.10 2.90 11.87 85.67 1.02 3.91 16 21 N -0.31 -8.31 12.50 -56.24 -0.70 -9.01 16 22 N -0.35 -6.99 3.58 -332.97 -1.19 -8.19 16 23 C 0.12 1.26 5.78 86.38 0.50 1.76 16 24 C -0.13 -1.28 5.01 30.59 0.15 -1.13 16 25 C -0.09 -0.55 2.92 -10.79 -0.03 -0.58 16 26 C -0.15 -1.09 9.19 71.99 0.66 -0.43 16 27 C -0.15 -1.06 8.95 71.98 0.64 -0.42 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 1.96 6.49 -2.39 -0.02 1.94 16 32 H 0.11 1.01 7.70 -2.39 -0.02 0.99 16 33 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 34 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 35 H 0.40 19.66 7.90 -92.71 -0.73 18.93 16 36 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 37 H 0.20 5.60 8.06 -2.91 -0.02 5.58 16 38 H 0.11 1.10 6.56 -2.39 -0.02 1.09 16 39 H 0.13 0.64 7.62 -2.39 -0.02 0.62 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.06 0.41 8.14 -2.39 -0.02 0.40 16 46 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.06 0.37 6.56 -2.39 -0.02 0.35 16 Total: -1.00 -73.76 406.14 6.00 -67.76 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.24 Total: 29.72 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: 6.91 Total: 22.78 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -3.23 Total: -96.76 kcal Atomic # 8 Polarization: -68.21 SS G_CDS: 0.06 Total: -68.15 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -73.76 6.00 -67.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755594657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.672 kcal (2) G-P(sol) polarization free energy of solvation -73.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds