Wall clock time and date at job start Tue Mar 31 2020 21:34:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50704 * 109.47155 * 2 1
4 4 C 1.38125 * 126.29131 * 269.97569 * 3 2 1
5 5 C 1.47285 * 126.43080 * 359.77001 * 4 3 2
6 6 O 1.21523 * 119.99767 * 0.02562 * 5 4 3
7 7 O 1.34757 * 119.99957 * 179.97438 * 5 4 3
8 8 C 1.45204 * 116.99684 * 179.97438 * 7 5 4
9 9 C 1.50701 * 109.46858 * 180.02562 * 8 7 5
10 10 O 1.21290 * 119.99962 * 0.02562 * 9 8 7
11 11 N 1.34776 * 119.99926 * 179.97438 * 9 8 7
12 12 C 1.37102 * 119.99908 * 180.02562 * 11 9 8
13 13 H 1.07991 * 119.99912 * 0.02562 * 12 11 9
14 14 C 1.38950 * 119.99549 * 180.02562 * 12 11 9
15 15 N 1.31414 * 120.00450 * 0.02562 * 14 12 11
16 16 Si 1.86802 * 119.99601 * 179.97438 * 14 12 11
17 17 H 1.48497 * 109.47194 * 359.97438 * 16 14 12
18 18 H 1.48496 * 109.46917 * 120.00279 * 16 14 12
19 19 H 1.48504 * 109.47343 * 240.00081 * 16 14 12
20 20 C 1.41347 * 107.14551 * 180.02562 * 4 3 2
21 21 N 1.30434 * 108.01298 * 0.02562 * 20 4 3
22 22 N 1.34221 * 126.29684 * 90.01249 * 3 2 1
23 23 C 1.46498 * 125.74232 * 359.94959 * 22 3 2
24 24 C 1.53002 * 109.47035 * 119.99855 * 23 22 3
25 25 C 1.53004 * 109.47050 * 184.99873 * 24 23 22
26 26 C 1.52996 * 109.46789 * 239.99511 * 23 22 3
27 27 C 1.52995 * 109.47298 * 65.00306 * 26 23 22
28 28 H 1.08999 * 109.47204 * 300.00449 * 1 2 3
29 29 H 1.09001 * 109.46667 * 60.00464 * 1 2 3
30 30 H 1.09004 * 109.46800 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.47234 * 240.00046 * 2 1 3
32 32 H 1.08997 * 109.47377 * 119.99641 * 2 1 3
33 33 H 1.09002 * 109.47025 * 300.00127 * 8 7 5
34 34 H 1.09003 * 109.46916 * 60.00443 * 8 7 5
35 35 H 0.97001 * 120.00163 * 0.02562 * 11 9 8
36 36 H 0.96996 * 120.00037 * 179.97438 * 15 14 12
37 37 H 1.07997 * 125.99729 * 179.97438 * 20 4 3
38 38 H 1.08998 * 109.47271 * 359.97438 * 23 22 3
39 39 H 1.08998 * 109.47275 * 304.99613 * 24 23 22
40 40 H 1.09008 * 109.47134 * 64.99853 * 24 23 22
41 41 H 1.08998 * 109.46857 * 180.02562 * 25 24 23
42 42 H 1.09003 * 109.46915 * 299.99521 * 25 24 23
43 43 H 1.08994 * 109.47033 * 60.00034 * 25 24 23
44 44 H 1.09005 * 109.47171 * 185.00223 * 26 23 22
45 45 H 1.09006 * 109.47627 * 304.99886 * 26 23 22
46 46 H 1.08999 * 109.47409 * 59.99859 * 27 26 23
47 47 H 1.09005 * 109.47772 * 179.97438 * 27 26 23
48 48 H 1.09005 * 109.47390 * 299.99768 * 27 26 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.3053 2.1915 -1.1133
5 6 2.1645 1.7773 -2.5197
6 8 1.7733 0.6583 -2.7873
7 8 2.4686 2.6395 -3.5097
8 6 2.3066 2.1629 -4.8717
9 6 2.6917 3.2557 -5.8353
10 8 3.0664 4.3302 -5.4155
11 7 2.6208 3.0387 -7.1636
12 6 2.9718 4.0327 -8.0403
13 1 3.3054 4.9894 -7.6665
14 6 2.8981 3.8091 -9.4097
15 7 2.4917 2.6451 -9.8645
16 14 3.3755 5.1636 -10.6041
17 1 3.7937 6.3690 -9.8443
18 1 4.5004 4.6993 -11.4551
19 1 2.2114 5.4996 -11.4627
20 6 2.7508 3.4503 -0.6497
21 7 2.7425 3.4258 0.6544
22 7 2.2974 2.1699 1.0818
23 6 2.1461 1.7442 2.4754
24 6 3.5001 1.8255 3.1833
25 6 3.3691 1.2641 4.6006
26 6 1.1452 2.6601 3.1825
27 6 -0.2385 2.4855 2.5535
28 1 -0.3633 0.5139 0.8899
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3633 -1.0277 -0.0005
31 1 1.8934 -0.5138 -0.8900
32 1 1.8934 -0.5138 0.8900
33 1 2.9469 1.2955 -5.0317
34 1 1.2664 1.8822 -5.0370
35 1 2.3215 2.1793 -7.4994
36 1 2.4399 2.4892 -10.8205
37 1 3.0470 4.2855 -1.2670
38 1 1.7818 0.7173 2.5041
39 1 4.2357 1.2432 2.6285
40 1 3.8224 2.8656 3.2328
41 1 4.3335 1.3224 5.1050
42 1 2.6335 1.8465 5.1554
43 1 3.0468 0.2241 4.5510
44 1 1.0990 2.4001 4.2400
45 1 1.4640 3.6971 3.0770
46 1 -0.5574 1.4485 2.6591
47 1 -0.9518 3.1376 3.0575
48 1 -0.1924 2.7455 1.4959
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000791588846.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:34:05
Heat of formation + Delta-G solvation = -69.052849 kcal
Electronic energy + Delta-G solvation = -29238.664590 eV
Core-core repulsion = 25101.905021 eV
Total energy + Delta-G solvation = -4136.759569 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 337.183 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.79120 -39.76412 -38.02344 -37.21953 -35.91902 -34.23624 -33.93247 -32.30929
-31.60435 -31.31264 -29.71283 -28.22656 -26.71848 -24.77573 -24.14684 -23.31486
-22.68796 -22.23212 -19.91600 -19.58685 -19.38715 -17.99736 -17.69710 -16.69824
-16.20203 -16.18690 -15.70141 -15.38527 -15.19070 -14.72527 -14.57829 -14.49091
-14.38452 -14.09501 -13.90030 -13.68086 -13.34786 -13.09582 -12.93911 -12.63088
-12.56886 -12.41247 -12.18285 -12.11044 -11.97595 -11.69402 -11.58087 -11.57545
-11.45770 -11.25706 -11.11543 -11.10810 -10.73000 -10.35447 -10.27509 -10.26471
-10.12487 -9.56681 -9.53041 -8.77769 -8.45196 -8.03047 -6.45470 -3.87111
1.29172 2.03581 2.09064 2.97079 3.15136 3.26924 3.32516 3.34983
3.80617 3.92975 4.16323 4.18497 4.28071 4.38725 4.63485 4.64034
4.71523 4.82629 4.87411 4.93995 4.97503 5.02492 5.15813 5.16641
5.20263 5.21471 5.25783 5.41634 5.44793 5.49256 5.54157 5.57552
5.62250 5.70718 5.73529 5.78523 5.79591 5.82694 5.94643 6.01183
6.14209 6.39509 6.66261 6.80724 7.45806 7.52512 7.97060 8.13586
8.54421 9.12290 9.45187 9.95429 10.71976
Molecular weight = 337.18amu
Principal moments of inertia in cm(-1)
A = 0.025196 B = 0.002081 C = 0.002010
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1111.009969 B =13453.141506 C =13923.569012
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.072 4.072
3 C 0.166 3.834
4 C -0.278 4.278
5 C 0.541 3.459
6 O -0.525 6.525
7 O -0.322 6.322
8 C 0.064 3.936
9 C 0.440 3.560
10 O -0.575 6.575
11 N -0.555 5.555
12 C -0.300 4.300
13 H 0.106 0.894
14 C 0.023 3.977
15 N -0.898 5.898
16 Si 0.933 3.067
17 H -0.267 1.267
18 H -0.281 1.281
19 H -0.281 1.281
20 C 0.107 3.893
21 N -0.297 5.297
22 N -0.350 5.350
23 C 0.158 3.842
24 C -0.133 4.133
25 C -0.151 4.151
26 C -0.134 4.134
27 C -0.157 4.157
28 H 0.054 0.946
29 H 0.066 0.934
30 H 0.067 0.933
31 H 0.112 0.888
32 H 0.074 0.926
33 H 0.086 0.914
34 H 0.086 0.914
35 H 0.395 0.605
36 H 0.273 0.727
37 H 0.200 0.800
38 H 0.103 0.897
39 H 0.069 0.931
40 H 0.080 0.920
41 H 0.062 0.938
42 H 0.061 0.939
43 H 0.057 0.943
44 H 0.084 0.916
45 H 0.081 0.919
46 H 0.056 0.944
47 H 0.060 0.940
48 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.522 -7.598 27.647 28.888
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.111 4.111
3 C 0.033 3.967
4 C -0.290 4.290
5 C 0.386 3.614
6 O -0.417 6.417
7 O -0.236 6.236
8 C -0.014 4.014
9 C 0.225 3.775
10 O -0.459 6.459
11 N -0.193 5.193
12 C -0.429 4.429
13 H 0.124 0.876
14 C -0.179 4.179
15 N -0.539 5.539
16 Si 0.759 3.241
17 H -0.191 1.191
18 H -0.207 1.207
19 H -0.207 1.207
20 C -0.080 4.080
21 N -0.115 5.115
22 N -0.128 5.128
23 C 0.057 3.943
24 C -0.171 4.171
25 C -0.209 4.209
26 C -0.172 4.172
27 C -0.214 4.214
28 H 0.073 0.927
29 H 0.085 0.915
30 H 0.086 0.914
31 H 0.130 0.870
32 H 0.093 0.907
33 H 0.104 0.896
34 H 0.104 0.896
35 H 0.228 0.772
36 H 0.082 0.918
37 H 0.217 0.783
38 H 0.121 0.879
39 H 0.088 0.912
40 H 0.099 0.901
41 H 0.082 0.918
42 H 0.080 0.920
43 H 0.076 0.924
44 H 0.103 0.897
45 H 0.099 0.901
46 H 0.075 0.925
47 H 0.079 0.921
48 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -3.170 -6.592 28.850 29.763
hybrid contribution -0.115 -0.470 -1.837 1.899
sum -3.285 -7.063 27.013 28.114
Atomic orbital electron populations
1.21761 0.93275 1.02683 1.02693 1.20495 0.97294 0.88425 1.04844
1.21441 0.94371 0.94628 0.86274 1.19031 1.22577 0.97202 0.90231
1.19989 0.73566 0.82502 0.85320 1.90766 1.44929 1.21234 1.84739
1.86589 1.78568 1.43147 1.15297 1.22699 1.02706 0.97557 0.78444
1.19360 0.86058 0.88860 0.83208 1.90558 1.51565 1.26247 1.77506
1.41711 1.58207 1.16004 1.03332 1.19772 1.41425 0.95471 0.86236
0.87584 1.25306 0.97146 0.97695 0.97738 1.69624 1.46668 1.22445
1.15155 0.85750 0.78085 0.80515 0.79703 1.19102 1.20677 1.20683
1.24313 0.94948 0.97341 0.91435 1.77198 1.22189 0.99031 1.13099
1.48615 1.48922 1.09722 1.05560 1.21588 0.97364 0.99195 0.76164
1.21863 0.95441 1.03527 0.96291 1.21810 1.02602 1.01056 0.95445
1.21950 0.94512 1.00924 0.99789 1.21863 0.96250 1.01740 1.01534
0.92659 0.91538 0.91394 0.86998 0.90740 0.89620 0.89618 0.77178
0.91754 0.78299 0.87907 0.91229 0.90134 0.91844 0.91965 0.92396
0.89717 0.90080 0.92474 0.92059 0.92442
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16
2 C -0.07 -0.68 5.45 -27.88 -0.15 -0.83 16
3 C 0.17 1.97 6.26 -81.59 -0.51 1.46 16
4 C -0.28 -4.07 6.13 -105.08 -0.64 -4.72 16
5 C 0.54 9.27 7.95 34.41 0.27 9.54 16
6 O -0.53 -9.25 14.63 -19.28 -0.28 -9.53 16
7 O -0.32 -6.28 9.60 -47.33 -0.45 -6.74 16
8 C 0.06 1.25 5.95 36.01 0.21 1.46 16
9 C 0.44 10.79 7.86 -10.99 -0.09 10.71 16
10 O -0.57 -16.16 16.08 -14.11 -0.23 -16.39 16
11 N -0.55 -14.22 5.29 -10.96 -0.06 -14.28 16
12 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16
13 H 0.11 3.09 7.16 -52.49 -0.38 2.72 16
14 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16
15 N -0.90 -24.33 13.05 55.50 0.72 -23.60 16
16 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16
17 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16
18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
20 C 0.11 1.50 11.87 -16.96 -0.20 1.30 16
21 N -0.30 -3.84 12.33 30.87 0.38 -3.46 16
22 N -0.35 -3.74 2.70 -50.15 -0.14 -3.87 16
23 C 0.16 1.14 2.48 -67.93 -0.17 0.98 16
24 C -0.13 -0.88 5.65 -26.73 -0.15 -1.03 16
25 C -0.15 -0.65 9.67 37.16 0.36 -0.29 16
26 C -0.13 -0.87 5.40 -26.74 -0.14 -1.02 16
27 C -0.16 -1.09 8.99 37.16 0.33 -0.76 16
28 H 0.05 0.41 6.00 -51.93 -0.31 0.10 16
29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.11 1.26 6.49 -51.93 -0.34 0.92 16
32 H 0.07 0.51 7.07 -51.93 -0.37 0.14 16
33 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16
34 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16
35 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16
36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16
37 H 0.20 2.63 8.06 -52.49 -0.42 2.21 16
38 H 0.10 0.58 6.63 -51.93 -0.34 0.23 16
39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
40 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16
41 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
42 H 0.06 0.23 6.46 -51.93 -0.34 -0.11 16
43 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16
44 H 0.08 0.37 6.34 -51.93 -0.33 0.04 16
45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
46 H 0.06 0.33 7.05 -51.93 -0.37 -0.04 16
47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
48 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16
LS Contribution 399.85 15.07 6.03 6.03
Total: -1.00 -33.19 399.85 -7.07 -40.26
By element:
Atomic # 1 Polarization: 15.02 SS G_CDS: -7.27 Total: 7.74 kcal
Atomic # 6 Polarization: 8.67 SS G_CDS: -0.75 Total: 7.92 kcal
Atomic # 7 Polarization: -46.12 SS G_CDS: 0.91 Total: -45.21 kcal
Atomic # 8 Polarization: -31.69 SS G_CDS: -0.96 Total: -32.66 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -33.19 -7.07 -40.26 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000791588846.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.791 kcal
(2) G-P(sol) polarization free energy of solvation -33.190 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.982 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.053 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds