Wall clock time and date at job start Tue Mar 31 2020 21:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47155 * 2 1 4 4 C 1.38125 * 126.29131 * 269.97569 * 3 2 1 5 5 C 1.47285 * 126.43080 * 359.77001 * 4 3 2 6 6 O 1.21523 * 119.99767 * 0.02562 * 5 4 3 7 7 O 1.34757 * 119.99957 * 179.97438 * 5 4 3 8 8 C 1.45204 * 116.99684 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.46858 * 180.02562 * 8 7 5 10 10 O 1.21290 * 119.99962 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99926 * 179.97438 * 9 8 7 12 12 C 1.37102 * 119.99908 * 180.02562 * 11 9 8 13 13 H 1.07991 * 119.99912 * 0.02562 * 12 11 9 14 14 C 1.38950 * 119.99549 * 180.02562 * 12 11 9 15 15 N 1.31414 * 120.00450 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99601 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47194 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46917 * 120.00279 * 16 14 12 19 19 H 1.48504 * 109.47343 * 240.00081 * 16 14 12 20 20 C 1.41347 * 107.14551 * 180.02562 * 4 3 2 21 21 N 1.30434 * 108.01298 * 0.02562 * 20 4 3 22 22 N 1.34221 * 126.29684 * 90.01249 * 3 2 1 23 23 C 1.46498 * 125.74232 * 359.94959 * 22 3 2 24 24 C 1.53002 * 109.47035 * 119.99855 * 23 22 3 25 25 C 1.53004 * 109.47050 * 184.99873 * 24 23 22 26 26 C 1.52996 * 109.46789 * 239.99511 * 23 22 3 27 27 C 1.52995 * 109.47298 * 65.00306 * 26 23 22 28 28 H 1.08999 * 109.47204 * 300.00449 * 1 2 3 29 29 H 1.09001 * 109.46667 * 60.00464 * 1 2 3 30 30 H 1.09004 * 109.46800 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47234 * 240.00046 * 2 1 3 32 32 H 1.08997 * 109.47377 * 119.99641 * 2 1 3 33 33 H 1.09002 * 109.47025 * 300.00127 * 8 7 5 34 34 H 1.09003 * 109.46916 * 60.00443 * 8 7 5 35 35 H 0.97001 * 120.00163 * 0.02562 * 11 9 8 36 36 H 0.96996 * 120.00037 * 179.97438 * 15 14 12 37 37 H 1.07997 * 125.99729 * 179.97438 * 20 4 3 38 38 H 1.08998 * 109.47271 * 359.97438 * 23 22 3 39 39 H 1.08998 * 109.47275 * 304.99613 * 24 23 22 40 40 H 1.09008 * 109.47134 * 64.99853 * 24 23 22 41 41 H 1.08998 * 109.46857 * 180.02562 * 25 24 23 42 42 H 1.09003 * 109.46915 * 299.99521 * 25 24 23 43 43 H 1.08994 * 109.47033 * 60.00034 * 25 24 23 44 44 H 1.09005 * 109.47171 * 185.00223 * 26 23 22 45 45 H 1.09006 * 109.47627 * 304.99886 * 26 23 22 46 46 H 1.08999 * 109.47409 * 59.99859 * 27 26 23 47 47 H 1.09005 * 109.47772 * 179.97438 * 27 26 23 48 48 H 1.09005 * 109.47390 * 299.99768 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3053 2.1915 -1.1133 5 6 2.1645 1.7773 -2.5197 6 8 1.7733 0.6583 -2.7873 7 8 2.4686 2.6395 -3.5097 8 6 2.3066 2.1629 -4.8717 9 6 2.6917 3.2557 -5.8353 10 8 3.0664 4.3302 -5.4155 11 7 2.6208 3.0387 -7.1636 12 6 2.9718 4.0327 -8.0403 13 1 3.3054 4.9894 -7.6665 14 6 2.8981 3.8091 -9.4097 15 7 2.4917 2.6451 -9.8645 16 14 3.3755 5.1636 -10.6041 17 1 3.7937 6.3690 -9.8443 18 1 4.5004 4.6993 -11.4551 19 1 2.2114 5.4996 -11.4627 20 6 2.7508 3.4503 -0.6497 21 7 2.7425 3.4258 0.6544 22 7 2.2974 2.1699 1.0818 23 6 2.1461 1.7442 2.4754 24 6 3.5001 1.8255 3.1833 25 6 3.3691 1.2641 4.6006 26 6 1.1452 2.6601 3.1825 27 6 -0.2385 2.4855 2.5535 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.9469 1.2955 -5.0317 34 1 1.2664 1.8822 -5.0370 35 1 2.3215 2.1793 -7.4994 36 1 2.4399 2.4892 -10.8205 37 1 3.0470 4.2855 -1.2670 38 1 1.7818 0.7173 2.5041 39 1 4.2357 1.2432 2.6285 40 1 3.8224 2.8656 3.2328 41 1 4.3335 1.3224 5.1050 42 1 2.6335 1.8465 5.1554 43 1 3.0468 0.2241 4.5510 44 1 1.0990 2.4001 4.2400 45 1 1.4640 3.6971 3.0770 46 1 -0.5574 1.4485 2.6591 47 1 -0.9518 3.1376 3.0575 48 1 -0.1924 2.7455 1.4959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791588846.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:05 Heat of formation + Delta-G solvation = -69.052849 kcal Electronic energy + Delta-G solvation = -29238.664590 eV Core-core repulsion = 25101.905021 eV Total energy + Delta-G solvation = -4136.759569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79120 -39.76412 -38.02344 -37.21953 -35.91902 -34.23624 -33.93247 -32.30929 -31.60435 -31.31264 -29.71283 -28.22656 -26.71848 -24.77573 -24.14684 -23.31486 -22.68796 -22.23212 -19.91600 -19.58685 -19.38715 -17.99736 -17.69710 -16.69824 -16.20203 -16.18690 -15.70141 -15.38527 -15.19070 -14.72527 -14.57829 -14.49091 -14.38452 -14.09501 -13.90030 -13.68086 -13.34786 -13.09582 -12.93911 -12.63088 -12.56886 -12.41247 -12.18285 -12.11044 -11.97595 -11.69402 -11.58087 -11.57545 -11.45770 -11.25706 -11.11543 -11.10810 -10.73000 -10.35447 -10.27509 -10.26471 -10.12487 -9.56681 -9.53041 -8.77769 -8.45196 -8.03047 -6.45470 -3.87111 1.29172 2.03581 2.09064 2.97079 3.15136 3.26924 3.32516 3.34983 3.80617 3.92975 4.16323 4.18497 4.28071 4.38725 4.63485 4.64034 4.71523 4.82629 4.87411 4.93995 4.97503 5.02492 5.15813 5.16641 5.20263 5.21471 5.25783 5.41634 5.44793 5.49256 5.54157 5.57552 5.62250 5.70718 5.73529 5.78523 5.79591 5.82694 5.94643 6.01183 6.14209 6.39509 6.66261 6.80724 7.45806 7.52512 7.97060 8.13586 8.54421 9.12290 9.45187 9.95429 10.71976 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.025196 B = 0.002081 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.009969 B =13453.141506 C =13923.569012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 C 0.166 3.834 4 C -0.278 4.278 5 C 0.541 3.459 6 O -0.525 6.525 7 O -0.322 6.322 8 C 0.064 3.936 9 C 0.440 3.560 10 O -0.575 6.575 11 N -0.555 5.555 12 C -0.300 4.300 13 H 0.106 0.894 14 C 0.023 3.977 15 N -0.898 5.898 16 Si 0.933 3.067 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.107 3.893 21 N -0.297 5.297 22 N -0.350 5.350 23 C 0.158 3.842 24 C -0.133 4.133 25 C -0.151 4.151 26 C -0.134 4.134 27 C -0.157 4.157 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.395 0.605 36 H 0.273 0.727 37 H 0.200 0.800 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.522 -7.598 27.647 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C 0.033 3.967 4 C -0.290 4.290 5 C 0.386 3.614 6 O -0.417 6.417 7 O -0.236 6.236 8 C -0.014 4.014 9 C 0.225 3.775 10 O -0.459 6.459 11 N -0.193 5.193 12 C -0.429 4.429 13 H 0.124 0.876 14 C -0.179 4.179 15 N -0.539 5.539 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.080 4.080 21 N -0.115 5.115 22 N -0.128 5.128 23 C 0.057 3.943 24 C -0.171 4.171 25 C -0.209 4.209 26 C -0.172 4.172 27 C -0.214 4.214 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.228 0.772 36 H 0.082 0.918 37 H 0.217 0.783 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.170 -6.592 28.850 29.763 hybrid contribution -0.115 -0.470 -1.837 1.899 sum -3.285 -7.063 27.013 28.114 Atomic orbital electron populations 1.21761 0.93275 1.02683 1.02693 1.20495 0.97294 0.88425 1.04844 1.21441 0.94371 0.94628 0.86274 1.19031 1.22577 0.97202 0.90231 1.19989 0.73566 0.82502 0.85320 1.90766 1.44929 1.21234 1.84739 1.86589 1.78568 1.43147 1.15297 1.22699 1.02706 0.97557 0.78444 1.19360 0.86058 0.88860 0.83208 1.90558 1.51565 1.26247 1.77506 1.41711 1.58207 1.16004 1.03332 1.19772 1.41425 0.95471 0.86236 0.87584 1.25306 0.97146 0.97695 0.97738 1.69624 1.46668 1.22445 1.15155 0.85750 0.78085 0.80515 0.79703 1.19102 1.20677 1.20683 1.24313 0.94948 0.97341 0.91435 1.77198 1.22189 0.99031 1.13099 1.48615 1.48922 1.09722 1.05560 1.21588 0.97364 0.99195 0.76164 1.21863 0.95441 1.03527 0.96291 1.21810 1.02602 1.01056 0.95445 1.21950 0.94512 1.00924 0.99789 1.21863 0.96250 1.01740 1.01534 0.92659 0.91538 0.91394 0.86998 0.90740 0.89620 0.89618 0.77178 0.91754 0.78299 0.87907 0.91229 0.90134 0.91844 0.91965 0.92396 0.89717 0.90080 0.92474 0.92059 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.07 -0.68 5.45 -27.88 -0.15 -0.83 16 3 C 0.17 1.97 6.26 -81.59 -0.51 1.46 16 4 C -0.28 -4.07 6.13 -105.08 -0.64 -4.72 16 5 C 0.54 9.27 7.95 34.41 0.27 9.54 16 6 O -0.53 -9.25 14.63 -19.28 -0.28 -9.53 16 7 O -0.32 -6.28 9.60 -47.33 -0.45 -6.74 16 8 C 0.06 1.25 5.95 36.01 0.21 1.46 16 9 C 0.44 10.79 7.86 -10.99 -0.09 10.71 16 10 O -0.57 -16.16 16.08 -14.11 -0.23 -16.39 16 11 N -0.55 -14.22 5.29 -10.96 -0.06 -14.28 16 12 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 13 H 0.11 3.09 7.16 -52.49 -0.38 2.72 16 14 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 15 N -0.90 -24.33 13.05 55.50 0.72 -23.60 16 16 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 C 0.11 1.50 11.87 -16.96 -0.20 1.30 16 21 N -0.30 -3.84 12.33 30.87 0.38 -3.46 16 22 N -0.35 -3.74 2.70 -50.15 -0.14 -3.87 16 23 C 0.16 1.14 2.48 -67.93 -0.17 0.98 16 24 C -0.13 -0.88 5.65 -26.73 -0.15 -1.03 16 25 C -0.15 -0.65 9.67 37.16 0.36 -0.29 16 26 C -0.13 -0.87 5.40 -26.74 -0.14 -1.02 16 27 C -0.16 -1.09 8.99 37.16 0.33 -0.76 16 28 H 0.05 0.41 6.00 -51.93 -0.31 0.10 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.11 1.26 6.49 -51.93 -0.34 0.92 16 32 H 0.07 0.51 7.07 -51.93 -0.37 0.14 16 33 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.20 2.63 8.06 -52.49 -0.42 2.21 16 38 H 0.10 0.58 6.63 -51.93 -0.34 0.23 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 41 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.06 0.23 6.46 -51.93 -0.34 -0.11 16 43 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 44 H 0.08 0.37 6.34 -51.93 -0.33 0.04 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.33 7.05 -51.93 -0.37 -0.04 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 LS Contribution 399.85 15.07 6.03 6.03 Total: -1.00 -33.19 399.85 -7.07 -40.26 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.27 Total: 7.74 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -0.75 Total: 7.92 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.91 Total: -45.21 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.96 Total: -32.66 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.19 -7.07 -40.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791588846.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.791 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds