Wall clock time and date at job start Tue Mar 31 2020 21:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47155 * 2 1 4 4 C 1.38125 * 126.29131 * 269.97569 * 3 2 1 5 5 C 1.47285 * 126.43080 * 359.77001 * 4 3 2 6 6 O 1.21523 * 119.99767 * 0.02562 * 5 4 3 7 7 O 1.34757 * 119.99957 * 179.97438 * 5 4 3 8 8 C 1.45204 * 116.99684 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.46858 * 180.02562 * 8 7 5 10 10 O 1.21290 * 119.99962 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99926 * 179.97438 * 9 8 7 12 12 C 1.37102 * 119.99908 * 180.02562 * 11 9 8 13 13 H 1.07991 * 119.99912 * 0.02562 * 12 11 9 14 14 C 1.38950 * 119.99549 * 180.02562 * 12 11 9 15 15 N 1.31414 * 120.00450 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99601 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47194 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46917 * 120.00279 * 16 14 12 19 19 H 1.48504 * 109.47343 * 240.00081 * 16 14 12 20 20 C 1.41347 * 107.14551 * 180.02562 * 4 3 2 21 21 N 1.30434 * 108.01298 * 0.02562 * 20 4 3 22 22 N 1.34221 * 126.29684 * 90.01249 * 3 2 1 23 23 C 1.46498 * 125.74232 * 359.94959 * 22 3 2 24 24 C 1.53002 * 109.47035 * 119.99855 * 23 22 3 25 25 C 1.53004 * 109.47050 * 184.99873 * 24 23 22 26 26 C 1.52996 * 109.46789 * 239.99511 * 23 22 3 27 27 C 1.52995 * 109.47298 * 65.00306 * 26 23 22 28 28 H 1.08999 * 109.47204 * 300.00449 * 1 2 3 29 29 H 1.09001 * 109.46667 * 60.00464 * 1 2 3 30 30 H 1.09004 * 109.46800 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47234 * 240.00046 * 2 1 3 32 32 H 1.08997 * 109.47377 * 119.99641 * 2 1 3 33 33 H 1.09002 * 109.47025 * 300.00127 * 8 7 5 34 34 H 1.09003 * 109.46916 * 60.00443 * 8 7 5 35 35 H 0.97001 * 120.00163 * 0.02562 * 11 9 8 36 36 H 0.96996 * 120.00037 * 179.97438 * 15 14 12 37 37 H 1.07997 * 125.99729 * 179.97438 * 20 4 3 38 38 H 1.08998 * 109.47271 * 359.97438 * 23 22 3 39 39 H 1.08998 * 109.47275 * 304.99613 * 24 23 22 40 40 H 1.09008 * 109.47134 * 64.99853 * 24 23 22 41 41 H 1.08998 * 109.46857 * 180.02562 * 25 24 23 42 42 H 1.09003 * 109.46915 * 299.99521 * 25 24 23 43 43 H 1.08994 * 109.47033 * 60.00034 * 25 24 23 44 44 H 1.09005 * 109.47171 * 185.00223 * 26 23 22 45 45 H 1.09006 * 109.47627 * 304.99886 * 26 23 22 46 46 H 1.08999 * 109.47409 * 59.99859 * 27 26 23 47 47 H 1.09005 * 109.47772 * 179.97438 * 27 26 23 48 48 H 1.09005 * 109.47390 * 299.99768 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3053 2.1915 -1.1133 5 6 2.1645 1.7773 -2.5197 6 8 1.7733 0.6583 -2.7873 7 8 2.4686 2.6395 -3.5097 8 6 2.3066 2.1629 -4.8717 9 6 2.6917 3.2557 -5.8353 10 8 3.0664 4.3302 -5.4155 11 7 2.6208 3.0387 -7.1636 12 6 2.9718 4.0327 -8.0403 13 1 3.3054 4.9894 -7.6665 14 6 2.8981 3.8091 -9.4097 15 7 2.4917 2.6451 -9.8645 16 14 3.3755 5.1636 -10.6041 17 1 3.7937 6.3690 -9.8443 18 1 4.5004 4.6993 -11.4551 19 1 2.2114 5.4996 -11.4627 20 6 2.7508 3.4503 -0.6497 21 7 2.7425 3.4258 0.6544 22 7 2.2974 2.1699 1.0818 23 6 2.1461 1.7442 2.4754 24 6 3.5001 1.8255 3.1833 25 6 3.3691 1.2641 4.6006 26 6 1.1452 2.6601 3.1825 27 6 -0.2385 2.4855 2.5535 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.9469 1.2955 -5.0317 34 1 1.2664 1.8822 -5.0370 35 1 2.3215 2.1793 -7.4994 36 1 2.4399 2.4892 -10.8205 37 1 3.0470 4.2855 -1.2670 38 1 1.7818 0.7173 2.5041 39 1 4.2357 1.2432 2.6285 40 1 3.8224 2.8656 3.2328 41 1 4.3335 1.3224 5.1050 42 1 2.6335 1.8465 5.1554 43 1 3.0468 0.2241 4.5510 44 1 1.0990 2.4001 4.2400 45 1 1.4640 3.6971 3.0770 46 1 -0.5574 1.4485 2.6591 47 1 -0.9518 3.1376 3.0575 48 1 -0.1924 2.7455 1.4959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791588846.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:04 Heat of formation + Delta-G solvation = -88.385999 kcal Electronic energy + Delta-G solvation = -29239.502938 eV Core-core repulsion = 25101.905021 eV Total energy + Delta-G solvation = -4137.597917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.77157 -41.20174 -39.92400 -37.89369 -37.36533 -36.01747 -35.05973 -33.40746 -32.81179 -32.45402 -30.80715 -29.75467 -27.45039 -26.56050 -25.14502 -23.89146 -23.70576 -23.08138 -21.41870 -21.00408 -20.33593 -20.03355 -18.81558 -17.84117 -17.76294 -17.60462 -17.06102 -16.56792 -16.35010 -15.83713 -15.78358 -15.63925 -15.40348 -15.26382 -14.99816 -14.75120 -14.59149 -14.21434 -13.83494 -13.69365 -13.56538 -13.54047 -13.33411 -13.09705 -12.93730 -12.88913 -12.71989 -12.45928 -12.43087 -12.30210 -12.10654 -12.06721 -11.91284 -11.79092 -11.66741 -11.57130 -11.52636 -11.36835 -10.49289 -10.43251 -10.10520 -9.81794 -8.51529 -6.01884 0.24783 0.96541 1.12710 1.35141 1.42549 1.55313 1.66419 1.87902 2.10400 2.31403 3.07894 3.13940 3.30515 3.35905 3.70238 3.74015 3.76898 3.94121 3.97378 4.11234 4.20132 4.21532 4.24702 4.28077 4.33628 4.37464 4.40969 4.46362 4.58751 4.64424 4.71538 4.83946 4.94739 4.96903 5.07349 5.10482 5.13286 5.17367 5.21217 5.29887 5.37728 5.38535 5.40400 5.45992 5.84972 5.90636 6.43006 6.48468 6.77951 7.04220 7.41253 7.95131 8.65824 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.025196 B = 0.002081 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.009969 B =13453.141506 C =13923.569012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.071 4.071 3 C 0.180 3.820 4 C -0.310 4.310 5 C 0.541 3.459 6 O -0.534 6.534 7 O -0.342 6.342 8 C 0.075 3.925 9 C 0.438 3.562 10 O -0.617 6.617 11 N -0.558 5.558 12 C -0.336 4.336 13 H 0.084 0.916 14 C -0.010 4.010 15 N -0.915 5.915 16 Si 0.999 3.001 17 H -0.272 1.272 18 H -0.269 1.269 19 H -0.269 1.269 20 C 0.096 3.904 21 N -0.306 5.306 22 N -0.337 5.337 23 C 0.147 3.853 24 C -0.129 4.129 25 C -0.147 4.147 26 C -0.129 4.129 27 C -0.156 4.156 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.400 0.600 36 H 0.281 0.719 37 H 0.196 0.804 38 H 0.131 0.869 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.115 0.885 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.169 -9.273 29.494 31.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C 0.045 3.955 4 C -0.323 4.323 5 C 0.388 3.612 6 O -0.425 6.425 7 O -0.257 6.257 8 C -0.002 4.002 9 C 0.224 3.776 10 O -0.504 6.504 11 N -0.196 5.196 12 C -0.465 4.465 13 H 0.101 0.899 14 C -0.211 4.211 15 N -0.555 5.555 16 Si 0.821 3.179 17 H -0.196 1.196 18 H -0.194 1.194 19 H -0.194 1.194 20 C -0.092 4.092 21 N -0.124 5.124 22 N -0.115 5.115 23 C 0.048 3.952 24 C -0.167 4.167 25 C -0.204 4.204 26 C -0.167 4.167 27 C -0.213 4.213 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.235 0.765 36 H 0.090 0.910 37 H 0.213 0.787 38 H 0.149 0.851 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.133 0.867 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.827 -8.297 30.718 32.048 hybrid contribution 0.066 0.008 -2.283 2.284 sum -3.761 -8.288 28.435 29.857 Atomic orbital electron populations 1.21745 0.92392 1.03829 1.02016 1.20621 0.97882 0.86661 1.05813 1.21796 0.92647 0.95420 0.85642 1.19084 1.25280 0.98324 0.89637 1.20319 0.73148 0.82161 0.85594 1.90746 1.45588 1.21338 1.84858 1.86585 1.79303 1.44378 1.15441 1.22482 1.04120 0.95684 0.77940 1.20123 0.84626 0.89372 0.83447 1.90522 1.53225 1.28396 1.78231 1.41736 1.58265 1.15861 1.03743 1.19751 1.43747 0.95571 0.87475 0.89850 1.26132 0.96286 1.00014 0.98642 1.69678 1.46207 1.23602 1.16052 0.84793 0.78314 0.77420 0.77326 1.19643 1.19411 1.19428 1.24310 0.95529 0.97389 0.91937 1.77149 1.22351 1.00490 1.12458 1.48964 1.47156 1.08637 1.06718 1.22087 0.98192 1.00741 0.74198 1.21824 0.94641 1.02498 0.97752 1.21797 1.03156 1.01909 0.93550 1.21950 0.93804 0.99573 1.01353 1.21862 0.96721 1.03062 0.99655 0.91184 0.94388 0.89309 0.88682 0.87082 0.87591 0.87620 0.76541 0.90983 0.78746 0.85134 0.92182 0.91912 0.91730 0.90929 0.90912 0.86726 0.92145 0.90534 0.91526 0.95369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.89 71.98 0.71 -1.43 16 2 C -0.07 -1.20 5.45 29.85 0.16 -1.03 16 3 C 0.18 4.13 6.26 42.17 0.26 4.40 16 4 C -0.31 -9.33 6.13 -20.16 -0.12 -9.45 16 5 C 0.54 18.97 7.95 70.20 0.56 19.53 16 6 O -0.53 -18.84 14.63 19.76 0.29 -18.55 16 7 O -0.34 -13.78 9.60 -50.28 -0.48 -14.26 16 8 C 0.08 2.98 5.95 71.24 0.42 3.41 16 9 C 0.44 22.12 7.86 87.66 0.69 22.81 16 10 O -0.62 -36.20 16.08 15.74 0.25 -35.94 16 11 N -0.56 -29.35 5.29 -306.99 -1.62 -30.97 16 12 C -0.34 -19.25 9.68 84.04 0.81 -18.44 16 13 H 0.08 5.08 7.16 -2.92 -0.02 5.05 16 14 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 15 N -0.92 -49.22 13.05 21.66 0.28 -48.94 16 16 Si 1.00 42.78 29.55 68.60 2.03 44.80 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 C 0.10 2.81 11.87 85.67 1.02 3.83 16 21 N -0.31 -8.06 12.33 -56.24 -0.69 -8.75 16 22 N -0.34 -6.87 2.70 -312.59 -0.84 -7.72 16 23 C 0.15 1.76 2.48 44.99 0.11 1.88 16 24 C -0.13 -1.45 5.65 30.60 0.17 -1.28 16 25 C -0.15 -0.80 9.67 71.98 0.70 -0.10 16 26 C -0.13 -1.37 5.40 30.59 0.17 -1.21 16 27 C -0.16 -1.83 8.99 71.98 0.65 -1.18 16 28 H 0.07 0.83 6.00 -2.39 -0.01 0.82 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 2.01 6.49 -2.39 -0.02 2.00 16 32 H 0.11 1.06 7.07 -2.39 -0.02 1.04 16 33 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 34 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 35 H 0.40 19.76 7.90 -92.71 -0.73 19.03 16 36 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 37 H 0.20 5.64 8.06 -2.91 -0.02 5.61 16 38 H 0.13 0.89 6.63 -2.39 -0.02 0.88 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.07 0.26 6.46 -2.39 -0.02 0.24 16 43 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.11 0.57 6.34 -2.38 -0.02 0.56 16 45 H 0.06 0.92 8.14 -2.38 -0.02 0.91 16 46 H 0.08 0.60 7.05 -2.39 -0.02 0.58 16 47 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 48 H 0.03 0.50 7.66 -2.38 -0.02 0.48 16 Total: -1.00 -73.97 399.85 6.24 -67.74 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.25 Total: 30.95 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 6.78 Total: 21.64 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -2.88 Total: -96.38 kcal Atomic # 8 Polarization: -68.82 SS G_CDS: 0.06 Total: -68.76 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.97 6.24 -67.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791588846.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.651 kcal (2) G-P(sol) polarization free energy of solvation -73.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds