Wall clock time and date at job start Tue Mar 31 2020 20:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36672 * 126.58325 * 2 1 4 4 C 1.47382 * 125.78048 * 359.97438 * 3 2 1 5 5 O 1.21516 * 120.00060 * 0.27221 * 4 3 2 6 6 O 1.34754 * 119.99866 * 180.02562 * 4 3 2 7 7 C 1.45196 * 116.99814 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47070 * 180.02562 * 7 6 4 9 9 O 1.42902 * 109.47165 * 65.00067 * 8 7 6 10 10 C 1.42907 * 113.99790 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46785 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00132 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99832 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99875 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00169 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46846 * 0.02562 * 15 13 11 17 17 H 1.48491 * 109.46734 * 120.00075 * 15 13 11 18 18 H 1.48493 * 109.47131 * 240.00334 * 15 13 11 19 19 N 1.34447 * 108.43744 * 180.26074 * 3 2 1 20 20 N 1.28765 * 109.51020 * 359.54961 * 19 3 2 21 21 N 1.34779 * 126.58190 * 179.97438 * 2 1 3 22 22 C 1.46500 * 126.58509 * 0.02562 * 21 2 1 23 23 C 1.53005 * 109.47261 * 89.99805 * 22 21 2 24 24 C 1.54270 * 110.02729 * 292.16761 * 23 22 21 25 25 C 1.54891 * 104.19225 * 217.10535 * 24 23 22 26 26 C 1.54895 * 102.74943 * 37.94236 * 25 24 23 27 27 C 1.53868 * 110.03079 * 175.00079 * 23 22 21 28 28 H 1.08999 * 109.46642 * 90.02588 * 1 2 3 29 29 H 1.09000 * 109.47113 * 210.02920 * 1 2 3 30 30 H 1.09000 * 109.47003 * 330.03165 * 1 2 3 31 31 H 1.09012 * 109.47257 * 299.99894 * 7 6 4 32 32 H 1.08996 * 109.47465 * 59.99951 * 7 6 4 33 33 H 1.09007 * 109.47118 * 184.99753 * 8 7 6 34 34 H 1.08995 * 109.46929 * 304.99452 * 8 7 6 35 35 H 1.08995 * 109.46902 * 300.00091 * 10 9 8 36 36 H 1.09004 * 109.46742 * 59.99617 * 10 9 8 37 37 H 0.97003 * 119.99750 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.47090 * 209.99488 * 22 21 2 39 39 H 1.08993 * 109.47237 * 329.99651 * 22 21 2 40 40 H 1.08998 * 110.01361 * 53.60451 * 23 22 21 41 41 H 1.08997 * 110.48753 * 335.78164 * 24 23 22 42 42 H 1.09002 * 110.48844 * 98.42749 * 24 23 22 43 43 H 1.09001 * 110.75599 * 279.63061 * 25 24 23 44 44 H 1.09002 * 110.91451 * 156.32793 * 25 24 23 45 45 H 1.08999 * 110.48344 * 203.38213 * 26 25 24 46 46 H 1.09002 * 110.48306 * 80.73753 * 26 25 24 47 47 H 1.09005 * 110.03257 * 238.56656 * 27 23 22 48 48 H 1.08999 * 110.03841 * 359.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3215 1.0975 0.0000 4 6 1.8750 2.5020 -0.0005 5 8 0.6880 2.7622 0.0040 6 8 2.7831 3.4977 -0.0010 7 6 2.2713 4.8565 -0.0021 8 6 3.4415 5.8421 -0.0031 9 8 4.1725 5.7125 -1.2242 10 6 5.2924 6.5941 -1.3276 11 6 5.9862 6.3722 -2.6468 12 1 5.6093 5.6322 -3.3374 13 6 7.1021 7.1138 -2.9722 14 7 7.5612 8.0144 -2.1310 15 14 7.9626 6.8382 -4.6072 16 1 7.2541 5.7769 -5.3667 17 1 7.9507 8.0992 -5.3913 18 1 9.3664 6.4200 -4.3634 19 7 3.5991 0.6788 -0.0058 20 7 3.6298 -0.6085 0.0001 21 7 2.3102 -1.0823 0.0005 22 6 1.8860 -2.4845 0.0006 23 6 1.7388 -2.9730 -1.4419 24 6 0.5525 -2.2594 -2.1228 25 6 -0.0828 -3.3507 -3.0199 26 6 0.0438 -4.6254 -2.1491 27 6 1.4153 -4.4772 -1.4586 28 1 -0.3632 -0.0005 -1.0277 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3633 0.8903 0.5133 31 1 1.6626 5.0148 -0.8924 32 1 1.6622 5.0161 0.8876 33 1 3.0599 6.8593 0.0856 34 1 4.0992 5.6261 0.8388 35 1 4.9488 7.6266 -1.2665 36 1 5.9886 6.3941 -0.5130 37 1 8.3465 8.5359 -2.3598 38 1 2.6325 -3.0899 0.5147 39 1 0.9288 -2.5745 0.5141 40 1 2.6579 -2.7824 -1.9959 41 1 -0.1636 -1.9138 -1.3774 42 1 0.9060 -1.4254 -2.7291 43 1 0.4763 -3.4606 -3.9491 44 1 -1.1294 -3.1252 -3.2248 45 1 0.0261 -5.5179 -2.7746 46 1 -0.7546 -4.6618 -1.4079 47 1 2.1770 -5.0167 -2.0215 48 1 1.3636 -4.8594 -0.4391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815243060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:17 Heat of formation + Delta-G solvation = -79.291118 kcal Electronic energy + Delta-G solvation = -28794.694994 eV Core-core repulsion = 24657.491460 eV Total energy + Delta-G solvation = -4137.203533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.49959 -41.26089 -39.47241 -38.74138 -37.47423 -35.80780 -34.95739 -33.63476 -31.83945 -30.97286 -29.70669 -29.23098 -28.80771 -26.49423 -25.39723 -24.54883 -23.55881 -22.54513 -21.69275 -21.46422 -20.66087 -19.34235 -18.71456 -18.06743 -18.01083 -17.46267 -17.39114 -16.86007 -16.37777 -16.26894 -16.20781 -15.74899 -15.37582 -15.32674 -14.89600 -14.50273 -14.40564 -14.15415 -14.08292 -13.82012 -13.70170 -13.38049 -13.24236 -13.00536 -12.91038 -12.72796 -12.67183 -12.46491 -12.16870 -12.08753 -12.04032 -11.96451 -11.94341 -11.74772 -11.69615 -11.54618 -11.36851 -11.27914 -11.05942 -10.90991 -10.36498 -10.27480 -8.33781 -6.45571 -0.06584 0.33428 0.93249 1.37714 1.39912 1.54508 1.58444 1.84483 2.33543 2.99639 3.03423 3.08318 3.31196 3.40476 3.51607 3.56324 3.67776 3.71556 3.92860 4.12084 4.14716 4.23024 4.28027 4.39582 4.44846 4.50647 4.52530 4.54360 4.58135 4.64331 4.66769 4.70902 4.80000 4.84208 4.85946 4.93560 4.98237 5.08450 5.16774 5.23851 5.27545 5.28182 5.37778 5.46808 5.49732 5.53055 5.94141 6.46822 6.52155 6.78868 6.87178 7.25694 8.78742 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.002218 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.770858 B =12623.521646 C =13809.651848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.155 3.845 3 C -0.125 4.125 4 C 0.555 3.445 5 O -0.512 6.512 6 O -0.351 6.351 7 C 0.078 3.922 8 C 0.052 3.948 9 O -0.411 6.411 10 C 0.208 3.792 11 C -0.550 4.550 12 H 0.056 0.944 13 C 0.006 3.994 14 N -0.928 5.928 15 Si 0.983 3.017 16 H -0.268 1.268 17 H -0.266 1.266 18 H -0.271 1.271 19 N -0.218 5.218 20 N -0.087 5.087 21 N -0.343 5.343 22 C 0.114 3.886 23 C -0.107 4.107 24 C -0.135 4.135 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.111 4.111 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.051 0.949 35 H -0.004 1.004 36 H -0.013 1.013 37 H 0.272 0.728 38 H 0.121 0.879 39 H 0.143 0.857 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.041 0.959 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.066 0.934 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.020 -28.361 6.032 36.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.015 3.985 3 C -0.263 4.263 4 C 0.399 3.601 5 O -0.401 6.401 6 O -0.266 6.266 7 C 0.005 3.995 8 C -0.025 4.025 9 O -0.331 6.331 10 C 0.133 3.867 11 C -0.587 4.587 12 H 0.074 0.926 13 C -0.192 4.192 14 N -0.567 5.567 15 Si 0.806 3.194 16 H -0.193 1.193 17 H -0.191 1.191 18 H -0.196 1.196 19 N -0.091 5.091 20 N -0.067 5.067 21 N -0.127 5.127 22 C -0.004 4.004 23 C -0.127 4.127 24 C -0.172 4.172 25 C -0.164 4.164 26 C -0.158 4.158 27 C -0.149 4.149 28 H 0.128 0.872 29 H 0.140 0.860 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.136 0.864 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.014 0.986 36 H 0.004 0.996 37 H 0.081 0.919 38 H 0.140 0.860 39 H 0.161 0.839 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.102 0.898 47 H 0.085 0.915 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.774 -28.677 5.932 35.904 hybrid contribution 0.234 0.949 -0.551 1.122 sum -20.540 -27.729 5.381 34.925 Atomic orbital electron populations 1.21110 0.81521 1.07071 1.06126 1.22265 0.97436 0.85064 0.93726 1.20254 0.90010 0.92827 1.23193 1.19574 0.83649 0.84632 0.72251 1.90770 1.16814 1.84534 1.47969 1.86736 1.39779 1.17075 1.83037 1.23333 0.95689 0.76021 1.04439 1.22685 0.93398 0.98174 0.88243 1.87876 1.44102 1.63120 1.38011 1.19874 0.82879 0.87751 0.96195 1.21397 1.12513 1.21761 1.03046 0.92557 1.25953 0.97060 0.94132 1.02075 1.70065 1.24767 1.24008 1.37876 0.85142 0.78009 0.78577 0.77710 1.19258 1.19138 1.19570 1.74831 1.20163 1.04756 1.09369 1.81976 0.98228 1.02731 1.23754 1.50788 1.04986 1.08828 1.48114 1.22846 1.04613 0.73432 0.99522 1.22200 0.99368 0.97566 0.93572 1.22742 0.97063 0.97787 0.99600 1.22496 1.01014 0.94962 0.97885 1.22380 0.97042 0.97451 0.98975 1.22114 0.97909 0.92176 1.02701 0.87224 0.86047 0.87964 0.90274 0.86449 0.89340 0.93023 0.98590 0.99561 0.91949 0.86049 0.83895 0.92388 0.88757 0.94023 0.92709 0.90462 0.91193 0.89816 0.91486 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 7.87 71.24 0.56 -0.55 16 2 C 0.15 3.19 6.56 41.74 0.27 3.46 16 3 C -0.13 -3.88 7.02 40.79 0.29 -3.60 16 4 C 0.56 18.63 7.96 70.23 0.56 19.19 16 5 O -0.51 -15.89 14.51 19.78 0.29 -15.60 16 6 O -0.35 -13.58 10.20 -53.99 -0.55 -14.14 16 7 C 0.08 2.59 5.85 71.98 0.42 3.01 16 8 C 0.05 2.02 6.33 71.98 0.46 2.47 16 9 O -0.41 -21.68 10.30 -145.57 -1.50 -23.18 16 10 C 0.21 12.29 5.69 71.24 0.41 12.69 16 11 C -0.55 -34.62 9.43 25.60 0.24 -34.38 16 12 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 13 C 0.01 0.38 5.46 84.65 0.46 0.84 16 14 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 15 Si 0.98 46.49 29.54 68.60 2.03 48.52 16 16 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 19 N -0.22 -7.83 12.39 -50.03 -0.62 -8.45 16 20 N -0.09 -2.59 13.78 37.02 0.51 -2.07 16 21 N -0.34 -6.55 3.54 -333.74 -1.18 -7.74 16 22 C 0.11 0.94 5.38 86.38 0.47 1.41 16 23 C -0.11 -1.00 3.15 -10.07 -0.03 -1.03 16 24 C -0.13 -1.27 5.20 31.67 0.16 -1.11 16 25 C -0.13 -0.98 6.91 31.89 0.22 -0.76 16 26 C -0.12 -0.53 6.83 31.67 0.22 -0.32 16 27 C -0.11 -0.54 6.46 31.32 0.20 -0.34 16 28 H 0.11 1.02 7.05 -2.39 -0.02 1.01 16 29 H 0.12 0.29 6.93 -2.39 -0.02 0.27 16 30 H 0.10 1.44 6.42 -2.39 -0.02 1.43 16 31 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 32 H 0.12 2.97 8.13 -2.39 -0.02 2.95 16 33 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.14 0.09 7.02 -2.39 -0.02 0.07 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 0.49 4.99 -2.39 -0.01 0.48 16 42 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.08 0.14 8.14 -2.39 -0.02 0.13 16 47 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 48 H 0.09 0.08 7.67 -2.39 -0.02 0.07 16 Total: -1.00 -83.33 395.14 5.12 -78.21 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: 0.96 Total: 0.52 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 4.90 Total: 1.02 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -1.01 Total: -75.36 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -1.76 Total: -52.92 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -83.33 5.12 -78.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815243060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.080 kcal (2) G-P(sol) polarization free energy of solvation -83.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds