Wall clock time and date at job start Tue Mar 31 2020 21:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50698 * 109.47506 * 2 1 4 4 C 1.35320 * 126.66876 * 90.27846 * 3 2 1 5 5 C 1.42271 * 103.91797 * 180.09352 * 4 3 2 6 6 C 1.48333 * 126.93179 * 179.91188 * 5 4 3 7 7 O 1.21498 * 119.99903 * 5.49026 * 6 5 4 8 8 N 1.34780 * 119.99671 * 185.47964 * 6 5 4 9 9 C 1.46492 * 120.00177 * 5.20599 * 8 6 5 10 10 C 1.50706 * 109.47117 * 275.39653 * 9 8 6 11 11 H 1.08000 * 119.99594 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99985 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00598 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99621 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47523 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46955 * 120.00250 * 14 12 10 17 17 H 1.48496 * 109.47304 * 239.99759 * 14 12 10 18 18 C 1.46499 * 119.99766 * 185.19743 * 8 6 5 19 19 C 1.53002 * 109.47210 * 270.00482 * 18 8 6 20 20 N 1.46903 * 109.47293 * 180.02562 * 19 18 8 21 21 C 1.47016 * 110.99759 * 293.63822 * 20 19 18 22 22 C 1.53104 * 109.25768 * 177.60963 * 21 20 19 23 23 O 1.43013 * 109.26001 * 56.84147 * 22 21 20 24 24 C 1.43015 * 113.73888 * 301.33706 * 23 22 21 25 25 C 1.47008 * 111.00116 * 170.00093 * 20 19 18 26 26 N 1.30983 * 106.12552 * 359.64837 * 5 4 3 27 27 O 1.20902 * 111.44100 * 0.22722 * 26 5 4 28 28 H 1.08998 * 109.47624 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47491 * 300.00531 * 1 2 3 30 30 H 1.09001 * 109.47147 * 60.00352 * 1 2 3 31 31 H 1.08998 * 109.47491 * 239.99469 * 2 1 3 32 32 H 1.09001 * 109.46707 * 119.99952 * 2 1 3 33 33 H 1.07995 * 128.03799 * 359.97300 * 4 3 2 34 34 H 1.09000 * 109.47158 * 35.39109 * 9 8 6 35 35 H 1.08998 * 109.47281 * 155.39555 * 9 8 6 36 36 H 0.96993 * 120.00489 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.47277 * 150.00604 * 18 8 6 38 38 H 1.09001 * 109.47361 * 30.00182 * 18 8 6 39 39 H 1.09001 * 109.47423 * 59.99939 * 19 18 8 40 40 H 1.08997 * 109.47409 * 300.00058 * 19 18 8 41 41 H 1.09006 * 109.50441 * 297.53520 * 21 20 19 42 42 H 1.09000 * 109.51009 * 57.66822 * 21 20 19 43 43 H 1.08999 * 109.49741 * 296.91135 * 22 21 20 44 44 H 1.08997 * 109.54188 * 176.80279 * 22 21 20 45 45 H 1.08997 * 109.50555 * 298.72744 * 24 23 22 46 46 H 1.09007 * 109.54023 * 178.62841 * 24 23 22 47 47 H 1.08997 * 109.50624 * 302.32483 * 25 20 19 48 48 H 1.09002 * 109.50843 * 62.41261 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3068 2.1809 1.0854 5 6 2.7395 3.4195 0.5352 6 6 3.1673 4.6264 1.2840 7 8 3.2658 4.5872 2.4943 8 7 3.4467 5.7665 0.6216 9 6 3.2193 5.8487 -0.8232 10 6 4.4149 5.2921 -1.5525 11 1 5.2598 4.9152 -0.9953 12 6 4.4305 5.2650 -2.9308 13 7 3.4019 5.7245 -3.6093 14 14 5.9129 4.5757 -3.8347 15 1 6.9286 4.1259 -2.8491 16 1 5.4909 3.4233 -4.6708 17 1 6.4973 5.6292 -4.7027 18 6 3.9778 6.9234 1.3466 19 6 2.8190 7.7938 1.8371 20 7 3.3515 8.9543 2.5636 21 6 4.0176 8.5376 3.8061 22 6 4.6082 9.7682 4.4997 23 8 3.5682 10.7210 4.7360 24 6 2.8984 11.1490 3.5471 25 6 2.2906 9.9325 2.8440 26 7 2.6895 3.2769 -0.7659 27 8 2.2996 2.1750 -1.0750 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 2.2162 1.9108 2.1271 34 1 2.3328 5.2710 -1.0849 35 1 3.0718 6.8902 -1.1091 36 1 3.4127 5.7051 -4.5790 37 1 4.6149 7.5073 0.6823 38 1 4.5613 6.5803 2.2010 39 1 2.1818 7.2099 2.5014 40 1 2.2354 8.1369 0.9829 41 1 3.2923 8.0611 4.4658 42 1 4.8160 7.8332 3.5726 43 1 5.3719 10.2136 3.8621 44 1 5.0539 9.4727 5.4494 45 1 3.6124 11.6347 2.8820 46 1 2.1071 11.8521 3.8074 47 1 1.8283 10.2463 1.9081 48 1 1.5373 9.4781 3.4876 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896623658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:55 Heat of formation + Delta-G solvation = -3.079656 kcal Electronic energy + Delta-G solvation = -30117.461027 eV Core-core repulsion = 25983.562270 eV Total energy + Delta-G solvation = -4133.898756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.42689 -39.68711 -38.96099 -36.16349 -34.97861 -34.61458 -33.21234 -32.51412 -31.26289 -30.07717 -29.49803 -27.24980 -26.26597 -24.21289 -24.05633 -23.74326 -22.91194 -22.09359 -21.18881 -20.35031 -18.39509 -17.23116 -16.75081 -16.70430 -16.41967 -16.28341 -16.01776 -15.44019 -15.14040 -15.01059 -14.66297 -14.50449 -14.44866 -14.16506 -13.93050 -13.64485 -13.14004 -13.03055 -12.70396 -12.50223 -12.36376 -12.30983 -12.01977 -11.77403 -11.67378 -11.44923 -11.34303 -11.14493 -10.97646 -10.84657 -10.70497 -10.41792 -10.29425 -10.05030 -9.84015 -9.82177 -9.64813 -9.50957 -8.94849 -8.42792 -8.38316 -7.84430 -6.07418 -4.09789 1.87736 2.15588 3.27242 3.35079 3.36526 3.41194 3.52952 3.77532 3.82234 4.06468 4.40981 4.68003 4.79308 4.83793 4.97168 4.99019 5.07826 5.10085 5.16965 5.22578 5.29466 5.33736 5.42224 5.49589 5.51871 5.53674 5.59405 5.67091 5.73382 5.74227 5.79238 5.87297 5.90703 5.93395 6.02328 6.10176 6.19940 6.34528 6.36182 6.64401 6.95671 6.99902 7.07299 7.28143 7.48946 7.83577 8.14214 8.14863 8.63164 8.88205 8.92447 9.53904 11.01183 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009855 B = 0.003558 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.440005 B = 7867.502759 C = 9928.004212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.037 4.037 3 C -0.063 4.063 4 C -0.185 4.185 5 C -0.042 4.042 6 C 0.596 3.404 7 O -0.563 6.563 8 N -0.580 5.580 9 C 0.235 3.765 10 C -0.514 4.514 11 H 0.054 0.946 12 C 0.073 3.927 13 N -0.888 5.888 14 Si 0.890 3.110 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.284 1.284 18 C 0.127 3.873 19 C 0.044 3.956 20 N -0.533 5.533 21 C 0.014 3.986 22 C 0.064 3.936 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.018 3.982 26 N -0.247 5.247 27 O 0.121 5.879 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.169 0.831 34 H 0.050 0.950 35 H 0.036 0.964 36 H 0.262 0.738 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.079 0.921 41 H 0.043 0.957 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.368 -1.337 10.448 11.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 C -0.126 4.126 4 C -0.208 4.208 5 C -0.201 4.201 6 C 0.383 3.617 7 O -0.443 6.443 8 N -0.310 5.310 9 C 0.116 3.884 10 C -0.553 4.553 11 H 0.072 0.928 12 C -0.129 4.129 13 N -0.527 5.527 14 Si 0.718 3.282 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.210 1.210 18 C 0.004 3.996 19 C -0.085 4.085 20 N -0.258 5.258 21 C -0.114 4.114 22 C -0.012 4.012 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.110 4.110 26 N 0.057 4.943 27 O 0.041 5.959 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.187 0.813 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.078 0.922 46 H 0.113 0.887 47 H 0.105 0.895 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.762 -0.113 9.763 10.463 hybrid contribution 0.172 -1.223 0.203 1.252 sum -3.590 -1.337 9.965 10.676 Atomic orbital electron populations 1.21793 0.93932 1.02185 1.02913 1.20005 0.96309 0.86994 1.04269 1.24385 1.04449 0.97276 0.86471 1.22247 1.05588 0.92262 1.00662 1.23323 1.08689 0.97612 0.90439 1.16959 0.77463 0.81656 0.85614 1.90670 1.55855 1.84594 1.13200 1.48153 1.60798 1.10362 1.11659 1.19710 0.98295 0.98370 0.72063 1.21231 1.01822 1.41049 0.91212 0.92763 1.24768 0.95962 0.94996 0.97211 1.69912 1.29582 1.46114 1.07119 0.86570 0.82936 0.78882 0.79818 1.19967 1.20819 1.20987 1.21258 0.94935 0.86377 0.97071 1.22508 0.97539 0.90575 0.97876 1.62140 1.28910 1.13850 1.20934 1.22853 0.99807 0.97897 0.90831 1.22683 0.89684 0.88418 1.00462 1.87951 1.50644 1.60975 1.31225 1.22651 0.96614 0.95145 0.86791 1.22769 0.93411 0.94072 1.00778 1.75138 1.08474 0.96150 1.14522 1.84986 1.59360 1.18109 1.33484 0.91695 0.92223 0.91945 0.89541 0.89037 0.81347 0.93196 0.94553 0.92827 0.89159 0.90912 0.94357 0.90253 0.93858 0.89088 0.92177 0.88580 0.92172 0.88650 0.89510 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.89 37.15 0.37 -0.98 16 2 C -0.04 -0.38 6.50 -27.89 -0.18 -0.56 16 3 C -0.06 -0.97 6.73 -35.35 -0.24 -1.21 16 4 C -0.19 -3.14 10.93 -39.07 -0.43 -3.57 16 5 C -0.04 -0.89 6.75 -82.53 -0.56 -1.44 16 6 C 0.60 13.27 7.64 -12.10 -0.09 13.18 16 7 O -0.56 -12.82 16.59 5.37 0.09 -12.73 16 8 N -0.58 -12.69 2.47 -175.99 -0.43 -13.12 16 9 C 0.23 5.80 4.75 -5.19 -0.02 5.77 16 10 C -0.51 -13.78 7.76 -34.44 -0.27 -14.05 16 11 H 0.05 1.51 7.81 -52.49 -0.41 1.10 16 12 C 0.07 1.99 5.46 -17.82 -0.10 1.90 16 13 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 14 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.13 2.38 5.28 -4.04 -0.02 2.36 16 19 C 0.04 0.72 5.28 -3.82 -0.02 0.70 16 20 N -0.53 -7.64 4.73 -234.30 -1.11 -8.75 16 21 C 0.01 0.19 5.44 -3.71 -0.02 0.17 16 22 C 0.06 0.74 7.01 37.21 0.26 1.00 16 23 O -0.39 -4.97 10.83 -35.23 -0.38 -5.35 16 24 C 0.07 0.71 7.01 37.21 0.26 0.97 16 25 C 0.02 0.22 5.64 -3.72 -0.02 0.20 16 26 N -0.25 -5.55 7.78 33.29 0.26 -5.29 16 27 O 0.12 2.35 11.18 17.24 0.19 2.54 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.17 2.46 8.06 -52.49 -0.42 2.03 16 34 H 0.05 1.32 5.96 -51.93 -0.31 1.01 16 35 H 0.04 0.93 8.03 -51.93 -0.42 0.51 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.09 1.71 8.07 -51.93 -0.42 1.29 16 38 H 0.07 1.35 5.87 -51.93 -0.31 1.04 16 39 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 40 H 0.08 1.33 8.04 -51.93 -0.42 0.91 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.22 6.38 -51.93 -0.33 0.89 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 48 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 392.09 15.07 5.91 5.91 Total: -1.00 -31.66 392.09 -8.50 -40.16 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.66 Total: 0.13 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.08 Total: 4.45 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.55 Total: -51.46 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.10 Total: -15.54 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.66 -8.50 -40.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896623658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.080 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds