Wall clock time and date at job start Tue Mar 31 2020 21:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50698 * 109.47506 * 2 1 4 4 C 1.35320 * 126.66876 * 90.27846 * 3 2 1 5 5 C 1.42271 * 103.91797 * 180.09352 * 4 3 2 6 6 C 1.48333 * 126.93179 * 179.91188 * 5 4 3 7 7 O 1.21498 * 119.99903 * 5.49026 * 6 5 4 8 8 N 1.34780 * 119.99671 * 185.47964 * 6 5 4 9 9 C 1.46492 * 120.00177 * 5.20599 * 8 6 5 10 10 C 1.50706 * 109.47117 * 275.39653 * 9 8 6 11 11 H 1.08000 * 119.99594 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99985 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00598 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99621 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47523 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46955 * 120.00250 * 14 12 10 17 17 H 1.48496 * 109.47304 * 239.99759 * 14 12 10 18 18 C 1.46499 * 119.99766 * 185.19743 * 8 6 5 19 19 C 1.53002 * 109.47210 * 270.00482 * 18 8 6 20 20 N 1.46903 * 109.47293 * 180.02562 * 19 18 8 21 21 C 1.47016 * 110.99759 * 293.63822 * 20 19 18 22 22 C 1.53104 * 109.25768 * 177.60963 * 21 20 19 23 23 O 1.43013 * 109.26001 * 56.84147 * 22 21 20 24 24 C 1.43015 * 113.73888 * 301.33706 * 23 22 21 25 25 C 1.47008 * 111.00116 * 170.00093 * 20 19 18 26 26 N 1.30983 * 106.12552 * 359.64837 * 5 4 3 27 27 O 1.20902 * 111.44100 * 0.22722 * 26 5 4 28 28 H 1.08998 * 109.47624 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47491 * 300.00531 * 1 2 3 30 30 H 1.09001 * 109.47147 * 60.00352 * 1 2 3 31 31 H 1.08998 * 109.47491 * 239.99469 * 2 1 3 32 32 H 1.09001 * 109.46707 * 119.99952 * 2 1 3 33 33 H 1.07995 * 128.03799 * 359.97300 * 4 3 2 34 34 H 1.09000 * 109.47158 * 35.39109 * 9 8 6 35 35 H 1.08998 * 109.47281 * 155.39555 * 9 8 6 36 36 H 0.96993 * 120.00489 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.47277 * 150.00604 * 18 8 6 38 38 H 1.09001 * 109.47361 * 30.00182 * 18 8 6 39 39 H 1.09001 * 109.47423 * 59.99939 * 19 18 8 40 40 H 1.08997 * 109.47409 * 300.00058 * 19 18 8 41 41 H 1.09006 * 109.50441 * 297.53520 * 21 20 19 42 42 H 1.09000 * 109.51009 * 57.66822 * 21 20 19 43 43 H 1.08999 * 109.49741 * 296.91135 * 22 21 20 44 44 H 1.08997 * 109.54188 * 176.80279 * 22 21 20 45 45 H 1.08997 * 109.50555 * 298.72744 * 24 23 22 46 46 H 1.09007 * 109.54023 * 178.62841 * 24 23 22 47 47 H 1.08997 * 109.50624 * 302.32483 * 25 20 19 48 48 H 1.09002 * 109.50843 * 62.41261 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3068 2.1809 1.0854 5 6 2.7395 3.4195 0.5352 6 6 3.1673 4.6264 1.2840 7 8 3.2658 4.5872 2.4943 8 7 3.4467 5.7665 0.6216 9 6 3.2193 5.8487 -0.8232 10 6 4.4149 5.2921 -1.5525 11 1 5.2598 4.9152 -0.9953 12 6 4.4305 5.2650 -2.9308 13 7 3.4019 5.7245 -3.6093 14 14 5.9129 4.5757 -3.8347 15 1 6.9286 4.1259 -2.8491 16 1 5.4909 3.4233 -4.6708 17 1 6.4973 5.6292 -4.7027 18 6 3.9778 6.9234 1.3466 19 6 2.8190 7.7938 1.8371 20 7 3.3515 8.9543 2.5636 21 6 4.0176 8.5376 3.8061 22 6 4.6082 9.7682 4.4997 23 8 3.5682 10.7210 4.7360 24 6 2.8984 11.1490 3.5471 25 6 2.2906 9.9325 2.8440 26 7 2.6895 3.2769 -0.7659 27 8 2.2996 2.1750 -1.0750 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 2.2162 1.9108 2.1271 34 1 2.3328 5.2710 -1.0849 35 1 3.0718 6.8902 -1.1091 36 1 3.4127 5.7051 -4.5790 37 1 4.6149 7.5073 0.6823 38 1 4.5613 6.5803 2.2010 39 1 2.1818 7.2099 2.5014 40 1 2.2354 8.1369 0.9829 41 1 3.2923 8.0611 4.4658 42 1 4.8160 7.8332 3.5726 43 1 5.3719 10.2136 3.8621 44 1 5.0539 9.4727 5.4494 45 1 3.6124 11.6347 2.8820 46 1 2.1071 11.8521 3.8074 47 1 1.8283 10.2463 1.9081 48 1 1.5373 9.4781 3.4876 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896623658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:54 Heat of formation + Delta-G solvation = -23.647066 kcal Electronic energy + Delta-G solvation = -30118.352897 eV Core-core repulsion = 25983.562270 eV Total energy + Delta-G solvation = -4134.790626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.94722 -41.04606 -40.36336 -37.52907 -36.53654 -35.70940 -34.67768 -34.51826 -32.24891 -31.39419 -30.81143 -29.11608 -27.62411 -25.67563 -25.06950 -24.86068 -24.75197 -23.48701 -22.57423 -21.41735 -19.96971 -18.88687 -18.41186 -18.25871 -17.84659 -17.74006 -17.17325 -16.86709 -16.39865 -16.24706 -16.08511 -15.99646 -15.59497 -15.35749 -15.24007 -14.93070 -14.39597 -14.33546 -14.25951 -14.21298 -13.66861 -13.52861 -13.41381 -13.15317 -12.89398 -12.76148 -12.60445 -12.54336 -12.36477 -12.22550 -12.05865 -11.86940 -11.76274 -11.65627 -11.53393 -11.36175 -11.26788 -10.74117 -10.57500 -10.24724 -9.71590 -9.50541 -8.16384 -6.25012 0.34399 0.78254 1.36319 1.38749 1.48193 1.86750 2.14749 2.28165 2.42300 2.73884 2.93844 3.12712 3.18708 3.55657 3.73363 3.85296 3.93964 4.01489 4.07834 4.15641 4.20440 4.25566 4.29712 4.32984 4.37969 4.40670 4.52674 4.53948 4.65555 4.69645 4.74930 4.78078 4.82357 4.83872 4.89554 4.98562 5.06762 5.10029 5.19172 5.23485 5.42156 5.55262 5.71976 5.81674 5.87056 6.07259 6.13565 6.31155 6.75806 6.98367 7.38077 7.42265 8.92008 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009855 B = 0.003558 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.440005 B = 7867.502759 C = 9928.004212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 C -0.040 4.040 4 C -0.192 4.192 5 C -0.070 4.070 6 C 0.591 3.409 7 O -0.573 6.573 8 N -0.584 5.584 9 C 0.255 3.745 10 C -0.516 4.516 11 H 0.038 0.962 12 C 0.034 3.966 13 N -0.916 5.916 14 Si 0.945 3.055 15 H -0.277 1.277 16 H -0.277 1.277 17 H -0.275 1.275 18 C 0.129 3.871 19 C 0.060 3.940 20 N -0.537 5.537 21 C 0.014 3.986 22 C 0.068 3.932 23 O -0.402 6.402 24 C 0.067 3.933 25 C 0.016 3.984 26 N -0.292 5.292 27 O 0.114 5.886 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.192 0.808 34 H 0.033 0.967 35 H 0.022 0.978 36 H 0.265 0.735 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.023 0.977 40 H 0.074 0.926 41 H 0.032 0.968 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.117 0.883 45 H 0.065 0.935 46 H 0.121 0.879 47 H 0.095 0.905 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 -2.371 11.096 12.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.074 4.074 3 C -0.102 4.102 4 C -0.214 4.214 5 C -0.227 4.227 6 C 0.378 3.622 7 O -0.454 6.454 8 N -0.314 5.314 9 C 0.134 3.866 10 C -0.555 4.555 11 H 0.056 0.944 12 C -0.166 4.166 13 N -0.556 5.556 14 Si 0.772 3.228 15 H -0.202 1.202 16 H -0.203 1.203 17 H -0.200 1.200 18 C 0.006 3.994 19 C -0.069 4.069 20 N -0.262 5.262 21 C -0.114 4.114 22 C -0.008 4.008 23 O -0.321 6.321 24 C -0.010 4.010 25 C -0.112 4.112 26 N 0.012 4.988 27 O 0.034 5.966 28 H 0.112 0.888 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.139 0.861 33 H 0.210 0.790 34 H 0.051 0.949 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.135 0.865 45 H 0.083 0.917 46 H 0.138 0.862 47 H 0.113 0.887 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.675 -1.126 10.424 11.110 hybrid contribution 0.088 -0.984 0.048 0.989 sum -3.587 -2.110 10.471 11.268 Atomic orbital electron populations 1.21800 0.92843 1.03871 1.02113 1.20365 0.97013 0.83519 1.06513 1.25330 1.01638 0.98584 0.84652 1.22534 1.05865 0.90797 1.02225 1.23530 1.09814 0.98630 0.90768 1.17216 0.77220 0.82061 0.85703 1.90640 1.56476 1.84884 1.13423 1.48135 1.60981 1.11436 1.10821 1.19271 0.97059 0.96753 0.73469 1.21247 1.01754 1.40932 0.91530 0.94390 1.25389 0.98218 0.95217 0.97824 1.69996 1.31065 1.47067 1.07427 0.85708 0.79988 0.78505 0.78644 1.20231 1.20311 1.20045 1.21332 0.95704 0.85757 0.96594 1.22217 0.96161 0.90906 0.97588 1.62162 1.29555 1.13001 1.21527 1.22896 0.99319 0.98944 0.90250 1.22751 0.89406 0.87283 1.01408 1.87939 1.50974 1.61045 1.32148 1.22786 0.97303 0.94614 0.86312 1.22887 0.92894 0.94061 1.01380 1.75125 1.10485 0.97822 1.15376 1.84911 1.59047 1.17783 1.34907 0.88762 0.92520 0.93335 0.87961 0.86076 0.79040 0.94883 0.95977 0.92597 0.89664 0.90765 0.95832 0.90800 0.94985 0.89549 0.91582 0.86537 0.91676 0.86157 0.88669 0.94634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.89 71.98 0.71 -1.53 16 2 C -0.04 -0.62 6.50 29.85 0.19 -0.42 16 3 C -0.04 -1.15 6.73 25.01 0.17 -0.98 16 4 C -0.19 -6.35 10.93 22.60 0.25 -6.10 16 5 C -0.07 -3.02 6.75 42.96 0.29 -2.73 16 6 C 0.59 27.06 7.64 86.93 0.66 27.73 16 7 O -0.57 -26.55 16.59 -3.71 -0.06 -26.62 16 8 N -0.58 -26.56 2.47 -829.01 -2.05 -28.61 16 9 C 0.25 13.10 4.75 85.64 0.41 13.51 16 10 C -0.52 -28.38 7.76 25.60 0.20 -28.18 16 11 H 0.04 2.18 7.81 -2.91 -0.02 2.15 16 12 C 0.03 1.86 5.46 84.65 0.46 2.32 16 13 N -0.92 -52.39 13.29 21.44 0.28 -52.11 16 14 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 15 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 18 C 0.13 4.99 5.28 86.38 0.46 5.44 16 19 C 0.06 2.05 5.28 86.30 0.46 2.51 16 20 N -0.54 -15.40 4.73 -895.20 -4.23 -19.63 16 21 C 0.01 0.37 5.44 86.32 0.47 0.84 16 22 C 0.07 1.48 7.01 72.02 0.50 1.99 16 23 O -0.40 -9.60 10.83 -148.98 -1.61 -11.22 16 24 C 0.07 1.34 7.01 72.01 0.50 1.85 16 25 C 0.02 0.38 5.64 86.31 0.49 0.86 16 26 N -0.29 -13.44 7.78 -49.52 -0.39 -13.83 16 27 O 0.11 4.44 11.18 71.87 0.80 5.24 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.19 5.27 8.06 -2.91 -0.02 5.24 16 34 H 0.03 1.84 5.96 -2.39 -0.01 1.83 16 35 H 0.02 1.19 8.03 -2.39 -0.02 1.17 16 36 H 0.26 14.35 8.31 -92.71 -0.77 13.57 16 37 H 0.08 3.35 8.07 -2.39 -0.02 3.33 16 38 H 0.07 2.83 5.87 -2.39 -0.01 2.82 16 39 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 40 H 0.07 2.57 8.04 -2.39 -0.02 2.55 16 41 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.09 2.34 6.38 -2.39 -0.02 2.32 16 43 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 47 H 0.10 2.10 8.09 -2.39 -0.02 2.08 16 48 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -69.74 392.09 1.95 -67.80 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.95 Total: 15.81 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 6.22 Total: 17.10 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -6.38 Total: -114.18 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.87 Total: -32.59 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -69.74 1.95 -67.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896623658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.149 kcal (2) G-P(sol) polarization free energy of solvation -69.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds