Wall clock time and date at job start Tue Mar 31 2020 21:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50699 * 109.47370 * 2 1 4 4 N 1.31952 * 119.63231 * 269.98124 * 3 2 1 5 5 C 1.32200 * 121.72136 * 180.02562 * 4 3 2 6 6 O 1.35758 * 119.61487 * 180.02562 * 5 4 3 7 7 C 1.42902 * 116.99600 * 359.97438 * 6 5 4 8 8 C 1.38909 * 120.77750 * 359.97438 * 5 4 3 9 9 C 1.38325 * 119.18364 * 359.74827 * 8 5 4 10 10 C 1.38645 * 119.62880 * 89.99796 * 3 2 1 11 11 N 1.40179 * 120.42618 * 359.95975 * 10 3 2 12 12 C 1.34777 * 120.00189 * 155.69919 * 11 10 3 13 13 O 1.21589 * 120.00013 * 354.28779 * 12 11 10 14 14 N 1.34776 * 120.00156 * 174.28448 * 12 11 10 15 15 C 1.46496 * 120.00462 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47334 * 89.99674 * 15 14 12 17 17 H 1.08005 * 119.99978 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00117 * 180.02562 * 16 15 14 19 19 N 1.31523 * 119.99986 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00154 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47203 * 89.99828 * 20 18 16 22 22 H 1.48496 * 109.47163 * 209.99954 * 20 18 16 23 23 H 1.48497 * 109.46764 * 329.99798 * 20 18 16 24 24 C 1.46509 * 119.99904 * 359.72154 * 14 12 11 25 25 C 1.53003 * 109.46691 * 90.00219 * 24 14 12 26 26 O 1.42897 * 109.47461 * 65.00124 * 25 24 14 27 27 C 1.42901 * 114.00085 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.47435 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47529 * 300.00247 * 1 2 3 30 30 H 1.09000 * 109.47220 * 59.99719 * 1 2 3 31 31 H 1.09005 * 109.47067 * 239.99598 * 2 1 3 32 32 H 1.09000 * 109.47220 * 120.00281 * 2 1 3 33 33 H 1.08998 * 109.47031 * 300.00104 * 7 6 5 34 34 H 1.09003 * 109.46887 * 60.00298 * 7 6 5 35 35 H 1.09003 * 109.46773 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.40605 * 180.02562 * 8 5 4 37 37 H 1.08004 * 120.78811 * 180.27268 * 9 8 5 38 38 H 0.96999 * 120.00006 * 335.69338 * 11 10 3 39 39 H 1.08999 * 109.47323 * 210.00338 * 15 14 12 40 40 H 1.09010 * 109.46742 * 330.00069 * 15 14 12 41 41 H 0.97000 * 119.99496 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.47358 * 209.99695 * 24 14 12 43 43 H 1.09001 * 109.47231 * 330.00447 * 24 14 12 44 44 H 1.09002 * 109.46726 * 185.00126 * 25 24 14 45 45 H 1.09004 * 109.47383 * 304.99636 * 25 24 14 46 46 H 1.09000 * 109.46801 * 180.02562 * 27 26 25 47 47 H 1.09003 * 109.46517 * 299.99320 * 27 26 25 48 48 H 1.08994 * 109.47500 * 60.00099 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2502 2.0357 -1.1469 5 6 2.6911 3.2811 -1.1951 6 8 2.9001 3.8727 -2.3990 7 6 2.6235 3.0908 -3.5628 8 6 2.9421 3.9920 -0.0284 9 6 2.7201 3.3828 1.1935 10 6 2.2608 2.0670 1.2052 11 7 2.0267 1.4076 2.4198 12 6 2.6745 1.7991 3.5350 13 8 3.5371 2.6534 3.4687 14 7 2.3661 1.2437 4.7236 15 6 3.0698 1.6696 5.9358 16 6 2.3311 2.8214 6.5671 17 1 1.4274 3.1982 6.1112 18 6 2.8088 3.3941 7.7267 19 7 2.1643 4.3997 8.2774 20 14 4.3721 2.7428 8.5150 21 1 5.5438 3.4718 7.9665 22 1 4.3068 2.9451 9.9847 23 1 4.5084 1.2938 8.2204 24 6 1.3224 0.2187 4.8044 25 6 1.9490 -1.1635 4.6103 26 8 2.8363 -1.4411 5.6955 27 6 3.4781 -2.7150 5.6103 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2527 2.2008 -3.5605 34 1 1.5745 2.7943 -3.5603 35 1 2.8325 3.6809 -4.4551 36 1 3.3018 5.0092 -0.0748 37 1 2.9023 3.9129 2.1167 38 1 1.3984 0.6696 2.4578 39 1 3.1169 0.8386 6.6396 40 1 4.0810 1.9844 5.6773 41 1 2.5002 4.8023 9.0935 42 1 0.8419 0.2657 5.7816 43 1 0.5801 0.3938 4.0257 44 1 1.1629 -1.9180 4.5816 45 1 2.5047 -1.1821 3.6727 46 1 4.1339 -2.8496 6.4705 47 1 2.7239 -3.5019 5.6022 48 1 4.0656 -2.7653 4.6936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933943206.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:38 Heat of formation + Delta-G solvation = -59.613419 kcal Electronic energy + Delta-G solvation = -30339.223836 eV Core-core repulsion = 26202.873591 eV Total energy + Delta-G solvation = -4136.350244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.03539 -39.74532 -38.15291 -37.64128 -35.23416 -34.75585 -33.92200 -32.55708 -31.26173 -29.96013 -29.30264 -27.64846 -26.91226 -26.13199 -24.46446 -23.48187 -22.83197 -21.97959 -21.54215 -19.61140 -18.37210 -17.90269 -17.15893 -16.88825 -16.57972 -16.21602 -16.00130 -15.67404 -15.21393 -14.87085 -14.81171 -14.63229 -14.27805 -13.99324 -13.87652 -13.73680 -13.43849 -13.08135 -12.85252 -12.57400 -12.39162 -12.30123 -12.19901 -11.98735 -11.85089 -11.67244 -11.56298 -11.33244 -11.22715 -11.04976 -10.90379 -10.43308 -10.37923 -10.09144 -9.84837 -9.64111 -9.54408 -9.45969 -9.10758 -8.53591 -7.93642 -7.54169 -6.04513 -4.02667 1.17243 1.43121 2.91645 3.19926 3.34957 3.41155 3.44218 3.52855 3.82216 3.97066 4.11268 4.17468 4.45115 4.65307 4.99192 5.04506 5.08959 5.12748 5.14471 5.16617 5.22401 5.25895 5.28077 5.30132 5.35432 5.39059 5.39625 5.42689 5.50324 5.64425 5.68448 5.68732 5.85030 5.86140 6.03368 6.04226 6.16265 6.44339 6.60196 6.85680 7.01190 7.21590 7.24027 7.30627 7.42988 7.67232 7.89986 8.36695 8.50641 8.96809 9.04528 9.56272 11.08798 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.003566 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.934069 B = 7850.505174 C = 9450.072276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 C 0.123 3.877 4 N -0.518 5.518 5 C 0.289 3.711 6 O -0.311 6.311 7 C 0.043 3.957 8 C -0.167 4.167 9 C -0.052 4.052 10 C 0.106 3.894 11 N -0.684 5.684 12 C 0.699 3.301 13 O -0.565 6.565 14 N -0.591 5.591 15 C 0.234 3.766 16 C -0.529 4.529 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.899 5.899 20 Si 0.873 3.127 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.262 1.262 24 C 0.109 3.891 25 C 0.041 3.959 26 O -0.373 6.373 27 C 0.031 3.969 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.143 0.857 37 H 0.171 0.829 38 H 0.401 0.599 39 H 0.045 0.955 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.045 0.955 46 H 0.084 0.916 47 H 0.037 0.963 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 -13.124 -17.818 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.016 4.016 4 N -0.241 5.241 5 C 0.109 3.891 6 O -0.218 6.218 7 C -0.053 4.053 8 C -0.188 4.188 9 C -0.079 4.079 10 C 0.007 3.993 11 N -0.334 5.334 12 C 0.401 3.599 13 O -0.442 6.442 14 N -0.325 5.325 15 C 0.114 3.886 16 C -0.567 4.567 17 H 0.091 0.909 18 C -0.129 4.129 19 N -0.538 5.538 20 Si 0.700 3.300 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.186 1.186 24 C -0.016 4.016 25 C -0.037 4.037 26 O -0.291 6.291 27 C -0.065 4.065 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.160 0.840 37 H 0.188 0.812 38 H 0.238 0.762 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.120 0.880 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.102 0.898 47 H 0.056 0.944 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.404 -12.430 -18.253 22.214 hybrid contribution 0.502 -0.587 0.909 1.193 sum -1.902 -13.017 -17.344 21.768 Atomic orbital electron populations 1.21747 0.94087 1.02093 1.02558 1.20405 0.96412 0.90724 1.03473 1.20398 0.99393 0.95960 0.85890 1.66943 1.18062 1.09666 1.29434 1.19671 0.94778 0.88683 0.85952 1.86243 1.82719 1.40720 1.12157 1.22762 1.01372 0.96102 0.85014 1.21035 1.06254 1.02124 0.89390 1.21919 0.94275 0.92406 0.99310 1.18204 1.03162 0.92499 0.85448 1.42883 1.46640 1.37554 1.06343 1.15931 0.81702 0.82150 0.80119 1.90855 1.34509 1.34227 1.84563 1.47181 1.38935 1.39578 1.06756 1.19664 0.92791 0.95864 0.80324 1.21367 1.11591 1.15130 1.08655 0.90860 1.24812 0.96850 0.94555 0.96677 1.69903 1.39815 1.23623 1.20440 0.86883 0.84286 0.80289 0.78528 1.20026 1.21222 1.18635 1.21536 0.90034 0.85402 1.04616 1.23161 0.92981 0.97512 0.90078 1.88062 1.60423 1.35269 1.45353 1.22721 0.96653 0.85345 1.01821 0.91789 0.92633 0.92049 0.89695 0.90644 0.92633 0.92612 0.89078 0.83966 0.81209 0.76163 0.93685 0.94743 0.92648 0.88017 0.90394 0.92558 0.93724 0.89757 0.94408 0.94469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.15 0.37 -0.83 16 2 C -0.07 -0.70 5.66 -27.89 -0.16 -0.86 16 3 C 0.12 1.65 6.05 -82.39 -0.50 1.15 16 4 N -0.52 -7.26 9.12 -9.40 -0.09 -7.34 16 5 C 0.29 4.21 7.49 -17.14 -0.13 4.09 16 6 O -0.31 -4.09 10.48 -18.98 -0.20 -4.29 16 7 C 0.04 0.41 10.38 101.05 1.05 1.46 16 8 C -0.17 -2.49 10.04 -39.30 -0.39 -2.89 16 9 C -0.05 -0.86 8.82 -39.13 -0.35 -1.21 16 10 C 0.11 1.64 6.43 -83.47 -0.54 1.10 16 11 N -0.68 -10.42 4.82 -14.10 -0.07 -10.49 16 12 C 0.70 13.95 8.10 -86.92 -0.70 13.25 16 13 O -0.57 -13.49 13.13 5.29 0.07 -13.42 16 14 N -0.59 -11.75 2.42 -180.80 -0.44 -12.18 16 15 C 0.23 5.68 4.05 -5.20 -0.02 5.66 16 16 C -0.53 -15.01 9.94 -34.44 -0.34 -15.35 16 17 H 0.07 2.27 8.06 -52.48 -0.42 1.85 16 18 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 19 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 20 Si 0.87 21.73 27.47 -169.99 -4.67 17.07 16 21 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 24 C 0.11 1.59 5.52 -4.04 -0.02 1.57 16 25 C 0.04 0.50 6.28 37.16 0.23 0.74 16 26 O -0.37 -5.66 9.55 -35.23 -0.34 -5.99 16 27 C 0.03 0.35 11.01 101.05 1.11 1.46 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.46 8.00 -51.93 -0.42 0.05 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.67 6.96 -51.93 -0.36 0.30 16 33 H 0.05 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.17 3.28 5.89 -52.48 -0.31 2.97 16 38 H 0.40 4.76 5.08 -40.82 -0.21 4.55 16 39 H 0.05 1.08 6.20 -51.93 -0.32 0.76 16 40 H 0.03 0.91 6.85 -51.92 -0.36 0.55 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.10 1.61 8.07 -51.93 -0.42 1.19 16 43 H 0.08 0.88 6.47 -51.93 -0.34 0.55 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 394.24 15.07 5.94 5.94 Total: -1.00 -35.45 394.24 -6.88 -42.33 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.38 Total: 3.92 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -0.49 Total: 11.37 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.18 Total: -56.92 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.47 Total: -23.71 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.45 -6.88 -42.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933943206.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.285 kcal (2) G-P(sol) polarization free energy of solvation -35.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds