Wall clock time and date at job start Tue Mar 31 2020 21:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50699 * 109.47370 * 2 1 4 4 N 1.31952 * 119.63231 * 269.98124 * 3 2 1 5 5 C 1.32200 * 121.72136 * 180.02562 * 4 3 2 6 6 O 1.35758 * 119.61487 * 180.02562 * 5 4 3 7 7 C 1.42902 * 116.99600 * 359.97438 * 6 5 4 8 8 C 1.38909 * 120.77750 * 359.97438 * 5 4 3 9 9 C 1.38325 * 119.18364 * 359.74827 * 8 5 4 10 10 C 1.38645 * 119.62880 * 89.99796 * 3 2 1 11 11 N 1.40179 * 120.42618 * 359.95975 * 10 3 2 12 12 C 1.34777 * 120.00189 * 155.69919 * 11 10 3 13 13 O 1.21589 * 120.00013 * 354.28779 * 12 11 10 14 14 N 1.34776 * 120.00156 * 174.28448 * 12 11 10 15 15 C 1.46496 * 120.00462 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47334 * 89.99674 * 15 14 12 17 17 H 1.08005 * 119.99978 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00117 * 180.02562 * 16 15 14 19 19 N 1.31523 * 119.99986 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00154 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47203 * 89.99828 * 20 18 16 22 22 H 1.48496 * 109.47163 * 209.99954 * 20 18 16 23 23 H 1.48497 * 109.46764 * 329.99798 * 20 18 16 24 24 C 1.46509 * 119.99904 * 359.72154 * 14 12 11 25 25 C 1.53003 * 109.46691 * 90.00219 * 24 14 12 26 26 O 1.42897 * 109.47461 * 65.00124 * 25 24 14 27 27 C 1.42901 * 114.00085 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.47435 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47529 * 300.00247 * 1 2 3 30 30 H 1.09000 * 109.47220 * 59.99719 * 1 2 3 31 31 H 1.09005 * 109.47067 * 239.99598 * 2 1 3 32 32 H 1.09000 * 109.47220 * 120.00281 * 2 1 3 33 33 H 1.08998 * 109.47031 * 300.00104 * 7 6 5 34 34 H 1.09003 * 109.46887 * 60.00298 * 7 6 5 35 35 H 1.09003 * 109.46773 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.40605 * 180.02562 * 8 5 4 37 37 H 1.08004 * 120.78811 * 180.27268 * 9 8 5 38 38 H 0.96999 * 120.00006 * 335.69338 * 11 10 3 39 39 H 1.08999 * 109.47323 * 210.00338 * 15 14 12 40 40 H 1.09010 * 109.46742 * 330.00069 * 15 14 12 41 41 H 0.97000 * 119.99496 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.47358 * 209.99695 * 24 14 12 43 43 H 1.09001 * 109.47231 * 330.00447 * 24 14 12 44 44 H 1.09002 * 109.46726 * 185.00126 * 25 24 14 45 45 H 1.09004 * 109.47383 * 304.99636 * 25 24 14 46 46 H 1.09000 * 109.46801 * 180.02562 * 27 26 25 47 47 H 1.09003 * 109.46517 * 299.99320 * 27 26 25 48 48 H 1.08994 * 109.47500 * 60.00099 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2502 2.0357 -1.1469 5 6 2.6911 3.2811 -1.1951 6 8 2.9001 3.8727 -2.3990 7 6 2.6235 3.0908 -3.5628 8 6 2.9421 3.9920 -0.0284 9 6 2.7201 3.3828 1.1935 10 6 2.2608 2.0670 1.2052 11 7 2.0267 1.4076 2.4198 12 6 2.6745 1.7991 3.5350 13 8 3.5371 2.6534 3.4687 14 7 2.3661 1.2437 4.7236 15 6 3.0698 1.6696 5.9358 16 6 2.3311 2.8214 6.5671 17 1 1.4274 3.1982 6.1112 18 6 2.8088 3.3941 7.7267 19 7 2.1643 4.3997 8.2774 20 14 4.3721 2.7428 8.5150 21 1 5.5438 3.4718 7.9665 22 1 4.3068 2.9451 9.9847 23 1 4.5084 1.2938 8.2204 24 6 1.3224 0.2187 4.8044 25 6 1.9490 -1.1635 4.6103 26 8 2.8363 -1.4411 5.6955 27 6 3.4781 -2.7150 5.6103 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2527 2.2008 -3.5605 34 1 1.5745 2.7943 -3.5603 35 1 2.8325 3.6809 -4.4551 36 1 3.3018 5.0092 -0.0748 37 1 2.9023 3.9129 2.1167 38 1 1.3984 0.6696 2.4578 39 1 3.1169 0.8386 6.6396 40 1 4.0810 1.9844 5.6773 41 1 2.5002 4.8023 9.0935 42 1 0.8419 0.2657 5.7816 43 1 0.5801 0.3938 4.0257 44 1 1.1629 -1.9180 4.5816 45 1 2.5047 -1.1821 3.6727 46 1 4.1339 -2.8496 6.4705 47 1 2.7239 -3.5019 5.6022 48 1 4.0656 -2.7653 4.6936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933943206.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:38 Heat of formation + Delta-G solvation = -86.029359 kcal Electronic energy + Delta-G solvation = -30340.369317 eV Core-core repulsion = 26202.873591 eV Total energy + Delta-G solvation = -4137.495726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.27472 -41.06951 -39.22357 -38.72352 -36.74028 -36.07138 -34.95262 -34.65634 -32.38810 -31.40885 -30.41932 -29.14973 -27.92891 -27.09547 -25.43117 -24.94933 -24.08272 -23.50345 -22.54343 -21.02606 -19.67876 -19.11920 -19.00425 -18.42176 -17.67024 -17.25527 -17.01376 -16.80085 -16.77125 -16.27342 -15.96370 -15.68683 -15.54383 -15.37243 -15.11786 -14.74429 -14.61320 -14.45160 -14.28323 -13.91174 -13.80613 -13.51623 -13.19515 -13.15220 -12.89936 -12.75663 -12.73331 -12.47578 -12.45889 -12.35927 -12.01863 -11.97712 -11.92909 -11.71392 -11.49129 -11.27918 -10.78993 -10.75775 -10.54284 -10.43291 -9.52422 -8.78891 -8.30656 -6.34091 0.03096 0.19451 1.34392 1.37930 1.47835 1.55575 2.08264 2.16610 2.34024 2.72714 2.85439 2.93254 3.05621 3.14190 3.63795 3.88952 4.06129 4.10616 4.22251 4.30661 4.31360 4.36397 4.42350 4.46483 4.48000 4.51116 4.56308 4.60403 4.63835 4.78350 4.83519 4.87780 4.90682 4.91450 4.98916 5.01431 5.06013 5.14128 5.21468 5.39595 5.48626 5.55318 5.61088 5.92113 6.24538 6.28633 6.34616 6.66682 6.76497 6.94212 7.26802 7.52179 8.86113 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.003566 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.934069 B = 7850.505174 C = 9450.072276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 C 0.139 3.861 4 N -0.516 5.516 5 C 0.289 3.711 6 O -0.319 6.319 7 C 0.037 3.963 8 C -0.176 4.176 9 C -0.071 4.071 10 C 0.085 3.915 11 N -0.661 5.661 12 C 0.695 3.305 13 O -0.614 6.614 14 N -0.598 5.598 15 C 0.252 3.748 16 C -0.532 4.532 17 H 0.031 0.969 18 C 0.014 3.986 19 N -0.945 5.945 20 Si 0.942 3.058 21 H -0.278 1.278 22 H -0.276 1.276 23 H -0.240 1.240 24 C 0.099 3.901 25 C 0.045 3.955 26 O -0.415 6.415 27 C 0.027 3.973 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.121 0.879 36 H 0.152 0.848 37 H 0.137 0.863 38 H 0.419 0.581 39 H 0.055 0.945 40 H 0.013 0.987 41 H 0.267 0.733 42 H 0.086 0.914 43 H 0.112 0.888 44 H 0.099 0.901 45 H 0.054 0.946 46 H 0.083 0.917 47 H 0.062 0.938 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.277 -16.507 -19.631 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.001 4.001 4 N -0.240 5.240 5 C 0.110 3.890 6 O -0.227 6.227 7 C -0.057 4.057 8 C -0.197 4.197 9 C -0.099 4.099 10 C -0.014 4.014 11 N -0.312 5.312 12 C 0.397 3.603 13 O -0.494 6.494 14 N -0.331 5.331 15 C 0.129 3.871 16 C -0.570 4.570 17 H 0.050 0.950 18 C -0.184 4.184 19 N -0.586 5.586 20 Si 0.765 3.235 21 H -0.203 1.203 22 H -0.201 1.201 23 H -0.163 1.163 24 C -0.023 4.023 25 C -0.032 4.032 26 O -0.334 6.334 27 C -0.069 4.069 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.139 0.861 36 H 0.169 0.831 37 H 0.155 0.845 38 H 0.260 0.740 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.130 0.870 44 H 0.117 0.883 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.081 0.919 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.716 -15.870 -20.127 25.774 hybrid contribution 0.489 0.504 1.303 1.480 sum -2.227 -15.366 -18.824 24.401 Atomic orbital electron populations 1.21743 0.92524 1.03804 1.02041 1.20591 0.97574 0.87990 1.04819 1.21000 0.97121 0.97360 0.84659 1.67106 1.18088 1.09384 1.29392 1.19781 0.94026 0.88798 0.86420 1.86240 1.82447 1.41509 1.12478 1.23057 1.01625 0.96584 0.84482 1.21080 1.06702 1.02757 0.89206 1.21708 0.95898 0.93488 0.98758 1.18333 1.04644 0.92308 0.86102 1.42446 1.46139 1.37661 1.04991 1.16096 0.81563 0.81597 0.81051 1.90829 1.36770 1.36287 1.85477 1.47077 1.39841 1.40767 1.05452 1.19172 0.91497 0.94406 0.81995 1.21605 1.10449 1.16334 1.08658 0.95039 1.25743 1.00478 0.94769 0.97412 1.70049 1.41932 1.25308 1.21268 0.85798 0.79255 0.80712 0.77731 1.20327 1.20080 1.16336 1.21911 0.89528 0.85701 1.05179 1.23191 0.93878 0.96465 0.89711 1.87990 1.61374 1.37402 1.46653 1.22871 0.97332 0.84462 1.02196 0.88961 0.92922 0.92874 0.88443 0.89197 0.92499 0.92298 0.86083 0.83071 0.84536 0.74007 0.92736 0.96905 0.92393 0.89533 0.87010 0.88342 0.92746 0.89860 0.91942 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.89 71.98 0.71 -1.10 16 2 C -0.07 -1.15 5.66 29.85 0.17 -0.98 16 3 C 0.14 3.48 6.05 42.64 0.26 3.74 16 4 N -0.52 -13.65 9.12 -296.51 -2.70 -16.36 16 5 C 0.29 8.25 7.49 84.80 0.63 8.88 16 6 O -0.32 -8.01 10.48 -90.84 -0.95 -8.96 16 7 C 0.04 0.63 10.38 113.37 1.18 1.80 16 8 C -0.18 -5.43 10.04 22.45 0.23 -5.20 16 9 C -0.07 -2.49 8.82 22.56 0.20 -2.30 16 10 C 0.08 2.60 6.43 38.18 0.25 2.85 16 11 N -0.66 -19.70 4.82 -316.77 -1.53 -21.23 16 12 C 0.69 28.33 8.10 179.05 1.45 29.78 16 13 O -0.61 -30.85 13.13 -3.99 -0.05 -30.91 16 14 N -0.60 -23.98 2.42 -844.18 -2.04 -26.02 16 15 C 0.25 12.48 4.05 85.63 0.35 12.82 16 16 C -0.53 -31.44 9.94 25.60 0.25 -31.19 16 17 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 18 C 0.01 0.83 5.47 84.65 0.46 1.29 16 19 N -0.95 -60.26 13.96 21.45 0.30 -59.96 16 20 Si 0.94 45.60 27.47 68.60 1.88 47.49 16 21 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.24 -10.69 6.54 99.48 0.65 -10.04 16 24 C 0.10 2.77 5.52 86.38 0.48 3.24 16 25 C 0.04 0.96 6.28 71.98 0.45 1.41 16 26 O -0.41 -11.65 9.55 -148.98 -1.42 -13.08 16 27 C 0.03 0.53 11.01 113.37 1.25 1.78 16 28 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.70 8.00 -2.39 -0.02 0.68 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.09 1.21 6.96 -2.39 -0.02 1.20 16 33 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 34 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 35 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.15 4.17 8.06 -2.91 -0.02 4.14 16 37 H 0.14 5.78 5.89 -2.91 -0.02 5.76 16 38 H 0.42 8.97 5.08 -92.71 -0.47 8.50 16 39 H 0.05 2.61 6.20 -2.39 -0.01 2.59 16 40 H 0.01 0.69 6.85 -2.38 -0.02 0.68 16 41 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 42 H 0.09 2.68 8.07 -2.39 -0.02 2.66 16 43 H 0.11 2.25 6.47 -2.39 -0.02 2.24 16 44 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.04 0.77 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -82.25 394.24 2.24 -80.01 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.44 Total: 22.17 kcal Atomic # 6 Polarization: 18.53 SS G_CDS: 8.31 Total: 26.84 kcal Atomic # 7 Polarization: -117.59 SS G_CDS: -5.97 Total: -123.56 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -2.43 Total: -52.94 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.49 kcal Total: -82.25 2.24 -80.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933943206.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.018 kcal (2) G-P(sol) polarization free energy of solvation -82.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds