Wall clock time and date at job start Tue Mar 31 2020 20:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33698 * 126.27472 * 2 1 4 4 C 1.30619 * 108.99445 * 180.26569 * 3 2 1 5 5 C 1.50706 * 125.42083 * 179.70721 * 4 3 2 6 6 C 1.52999 * 109.47172 * 300.03082 * 5 4 3 7 7 C 1.52999 * 109.46800 * 60.02833 * 5 4 3 8 8 O 1.33663 * 109.15743 * 359.73761 * 4 3 2 9 9 C 1.35347 * 107.68249 * 359.97438 * 8 4 3 10 10 C 1.46725 * 126.64180 * 180.02562 * 9 8 4 11 11 O 1.21682 * 119.99643 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00128 * 0.02657 * 10 9 8 13 13 C 1.46504 * 119.99981 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47036 * 180.02562 * 13 12 10 15 15 H 1.09002 * 110.78272 * 51.75735 * 14 13 12 16 16 C 1.54327 * 110.71739 * 288.52195 * 14 13 12 17 17 N 1.47014 * 107.27187 * 219.44553 * 16 14 13 18 18 C 1.36941 * 125.65028 * 178.98893 * 17 16 14 19 19 H 1.08001 * 119.99881 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00004 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00364 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00071 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47118 * 89.99738 * 22 20 18 24 24 H 1.48494 * 109.47296 * 210.00232 * 22 20 18 25 25 H 1.48504 * 109.46862 * 329.99727 * 22 20 18 26 26 C 1.47419 * 108.70437 * 358.94082 * 17 16 14 27 27 C 1.54912 * 104.83306 * 24.12578 * 26 17 16 28 28 H 1.08995 * 111.03828 * 204.90274 * 27 26 17 29 29 O 1.42903 * 110.99758 * 81.06681 * 27 26 17 30 30 H 1.09001 * 109.47461 * 270.18619 * 1 2 3 31 31 H 1.08999 * 109.47287 * 30.19091 * 1 2 3 32 32 H 1.09008 * 109.47024 * 150.18404 * 1 2 3 33 33 H 1.08997 * 109.46759 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47239 * 59.99573 * 6 5 4 35 35 H 1.08995 * 109.46783 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47022 * 300.00143 * 6 5 4 37 37 H 1.08994 * 109.47399 * 300.00151 * 7 5 4 38 38 H 1.09004 * 109.46615 * 60.00349 * 7 5 4 39 39 H 1.08995 * 109.47023 * 179.97438 * 7 5 4 40 40 H 0.97000 * 119.99775 * 0.02562 * 12 10 9 41 41 H 1.08996 * 109.46660 * 60.00162 * 13 12 10 42 42 H 1.08998 * 109.47245 * 300.00289 * 13 12 10 43 43 H 1.08999 * 109.88583 * 338.86569 * 16 14 13 44 44 H 1.09001 * 109.88372 * 100.02571 * 16 14 13 45 45 H 0.96996 * 119.99935 * 179.97438 * 21 20 18 46 46 H 1.09009 * 110.36844 * 265.29198 * 26 17 16 47 47 H 1.09002 * 110.37005 * 142.96697 * 26 17 16 48 48 H 0.96700 * 114.00311 * 67.80834 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5452 0.6899 -0.0057 5 6 4.7440 1.6031 -0.0140 6 6 4.7057 2.4838 -1.2645 7 6 4.7195 2.4880 1.2339 8 8 3.5890 -0.6460 -0.0038 9 6 2.3136 -1.0992 0.0040 10 6 1.8827 -2.5017 0.0093 11 8 0.6967 -2.7736 0.0158 12 7 2.8004 -3.4887 0.0069 13 6 2.3701 -4.8891 0.0127 14 6 3.5991 -5.8003 0.0091 15 1 4.2894 -5.5218 0.8054 16 6 4.3041 -5.7607 -1.3631 17 7 4.7422 -7.1305 -1.6685 18 6 5.3921 -7.5254 -2.8073 19 1 5.6233 -6.8022 -3.5754 20 6 5.7536 -8.8551 -2.9745 21 7 5.4722 -9.7364 -2.0382 22 14 6.6395 -9.3940 -4.5283 23 1 8.1062 -9.2788 -4.3271 24 1 6.2908 -10.8049 -4.8329 25 1 6.2254 -8.5265 -5.6603 26 6 4.3671 -8.0083 -0.5451 27 6 3.1797 -7.2882 0.1415 28 1 3.0982 -7.5794 1.1887 29 8 1.9570 -7.5396 -0.5540 30 1 -0.3634 0.0033 1.0276 31 1 -0.3634 0.8882 -0.5168 32 1 -0.3633 -0.8917 -0.5110 33 1 5.6557 1.0058 -0.0180 34 1 3.7939 3.0811 -1.2605 35 1 5.5725 3.1445 -1.2702 36 1 4.7230 1.8533 -2.1535 37 1 3.8078 3.0853 1.2380 38 1 4.7468 1.8605 2.1248 39 1 5.5867 3.1482 1.2282 40 1 3.7458 -3.2718 0.0021 41 1 1.7675 -5.0876 -0.8736 42 1 1.7768 -5.0832 0.9062 43 1 3.6083 -5.4150 -2.1276 44 1 5.1675 -5.0969 -1.3174 45 1 5.7245 -10.6656 -2.1552 46 1 5.2006 -8.1124 0.1497 47 1 4.0558 -8.9853 -0.9146 48 1 1.6548 -8.4566 -0.4996 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958467909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:05 Heat of formation + Delta-G solvation = -46.833570 kcal Electronic energy + Delta-G solvation = -29430.417534 eV Core-core repulsion = 25294.621465 eV Total energy + Delta-G solvation = -4135.796069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.66522 -39.66311 -38.26023 -36.25256 -35.57857 -34.83674 -34.52887 -32.25482 -31.23842 -29.86522 -28.22219 -27.64653 -27.50578 -25.59732 -24.55742 -23.47594 -21.91587 -20.97824 -20.67307 -20.22778 -19.72472 -18.15450 -17.33773 -17.15477 -16.62515 -16.30216 -15.87000 -15.10676 -14.92666 -14.85172 -14.68508 -14.24403 -14.06627 -13.81893 -13.63990 -13.40621 -13.27951 -13.16182 -12.73782 -12.63360 -12.52392 -12.38617 -12.14409 -11.98856 -11.76600 -11.54162 -11.42938 -11.27354 -11.14941 -10.98223 -10.83864 -10.69467 -10.41778 -10.36716 -10.09453 -9.90905 -9.84755 -9.22790 -9.13359 -8.85071 -8.70260 -6.86891 -5.71291 -3.11329 0.64095 2.14742 2.18729 3.00248 3.09043 3.37265 3.42573 3.44491 3.58695 4.34121 4.43699 4.46334 4.54516 4.60955 4.69150 4.80534 5.07308 5.18527 5.19616 5.24486 5.27534 5.35563 5.36667 5.39609 5.48009 5.48597 5.50268 5.57941 5.66736 5.71865 5.76590 5.84309 5.86171 5.98962 6.07392 6.14383 6.28032 6.34873 6.41959 6.59701 6.81495 7.24280 7.26293 7.48227 7.55272 7.72865 7.99866 8.20964 8.34709 9.16414 9.77681 10.41445 11.33708 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.002536 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.396791 B =11037.128992 C =12336.357115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.079 3.921 3 N -0.483 5.483 4 C 0.223 3.777 5 C -0.001 4.001 6 C -0.144 4.144 7 C -0.144 4.144 8 O -0.187 6.187 9 C -0.117 4.117 10 C 0.606 3.394 11 O -0.516 6.516 12 N -0.713 5.713 13 C 0.140 3.860 14 C -0.107 4.107 15 H 0.087 0.913 16 C 0.144 3.856 17 N -0.598 5.598 18 C -0.218 4.218 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.926 5.926 22 Si 0.916 3.084 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.126 3.874 27 C 0.083 3.917 28 H 0.055 0.945 29 O -0.557 6.557 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.404 0.596 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.028 0.972 44 H 0.019 0.981 45 H 0.252 0.748 46 H 0.019 0.981 47 H 0.112 0.888 48 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.727 20.852 8.200 22.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.045 4.045 3 N -0.213 5.213 4 C 0.017 3.983 5 C -0.020 4.020 6 C -0.202 4.202 7 C -0.201 4.201 8 O -0.073 6.073 9 C -0.172 4.172 10 C 0.391 3.609 11 O -0.394 6.394 12 N -0.363 5.363 13 C 0.018 3.982 14 C -0.126 4.126 15 H 0.105 0.895 16 C 0.018 3.982 17 N -0.323 5.323 18 C -0.347 4.347 19 H 0.095 0.905 20 C -0.207 4.207 21 N -0.575 5.575 22 Si 0.746 3.254 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.001 3.999 27 C 0.022 3.978 28 H 0.073 0.927 29 O -0.363 6.363 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.239 0.761 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.037 0.963 47 H 0.130 0.870 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.556 21.651 7.955 23.511 hybrid contribution 1.369 -1.543 -0.597 2.147 sum -3.187 20.108 7.358 21.648 Atomic orbital electron populations 1.20382 0.85270 1.04391 1.03644 1.22065 0.98330 0.86372 0.97768 1.70270 1.00259 1.30979 1.19794 1.26565 0.95675 0.79177 0.96835 1.19787 0.90485 0.93167 0.98579 1.21853 1.03524 0.99420 0.95414 1.21847 1.03533 0.99369 0.95385 1.84461 1.29821 1.23714 1.69351 1.23005 0.81257 0.96426 1.16487 1.16290 0.85875 0.81227 0.77490 1.90859 1.15671 1.81826 1.51019 1.46059 1.09791 1.06947 1.73500 1.21356 0.96709 0.76872 1.03306 1.22517 0.95979 0.94385 0.99739 0.89526 1.21325 0.95296 0.89018 0.92548 1.44340 1.67595 1.01929 1.18461 1.19087 1.28355 0.93025 0.94205 0.90489 1.24764 1.01571 0.95870 0.98522 1.69743 1.52341 1.02256 1.33172 0.86047 0.79226 0.77796 0.82299 1.21655 1.21619 1.20677 1.22594 0.91655 0.97124 0.88524 1.23202 0.86658 0.93983 0.93951 0.92697 1.86388 1.39775 1.32827 1.77305 0.90073 0.90550 0.88549 0.88008 0.91082 0.90716 0.92022 0.91076 0.92143 0.90725 0.76116 0.89735 0.91222 0.95365 0.96321 0.93727 0.96309 0.87000 0.77742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 9.87 36.00 0.36 -0.53 16 2 C 0.08 1.04 7.16 -82.47 -0.59 0.45 16 3 N -0.48 -6.03 11.26 -7.07 -0.08 -6.10 16 4 C 0.22 2.48 6.82 -12.79 -0.09 2.39 16 5 C 0.00 0.00 3.39 -91.77 -0.31 -0.32 16 6 C -0.14 -0.91 9.18 37.16 0.34 -0.57 16 7 C -0.14 -0.85 9.18 37.16 0.34 -0.51 16 8 O -0.19 -2.36 10.57 4.42 0.05 -2.31 16 9 C -0.12 -1.62 7.18 -36.84 -0.26 -1.88 16 10 C 0.61 9.12 7.79 -12.83 -0.10 9.02 16 11 O -0.52 -8.82 14.80 5.20 0.08 -8.74 16 12 N -0.71 -10.06 5.47 -61.61 -0.34 -10.40 16 13 C 0.14 2.19 4.50 -4.04 -0.02 2.17 16 14 C -0.11 -1.80 2.89 -88.79 -0.26 -2.05 16 15 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 16 C 0.14 2.98 6.75 -3.07 -0.02 2.96 16 17 N -0.60 -15.11 3.39 -170.07 -0.58 -15.68 16 18 C -0.22 -6.07 10.27 -15.06 -0.15 -6.23 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 21 N -0.93 -26.45 10.09 55.49 0.56 -25.89 16 22 Si 0.92 21.99 29.55 -169.99 -5.02 16.97 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.13 2.93 5.62 -2.53 -0.01 2.92 16 27 C 0.08 1.50 4.17 -24.59 -0.10 1.40 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 O -0.56 -10.12 12.33 -35.23 -0.43 -10.56 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.17 6.48 -51.92 -0.34 0.83 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.40 5.10 8.27 -40.82 -0.34 4.76 16 41 H 0.08 1.53 7.52 -51.93 -0.39 1.14 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.03 0.62 7.68 -51.93 -0.40 0.22 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 47 H 0.11 2.91 5.88 -51.93 -0.31 2.61 16 48 H 0.38 5.55 9.12 45.56 0.42 5.97 16 LS Contribution 394.09 15.07 5.94 5.94 Total: -1.00 -33.18 394.09 -7.63 -40.81 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.82 Total: 7.19 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -0.98 Total: 8.79 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.43 Total: -58.08 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.31 Total: -21.61 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.18 -7.63 -40.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958467909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.024 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds