Wall clock time and date at job start Tue Mar 31 2020 20:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33698 * 126.27472 * 2 1 4 4 C 1.30619 * 108.99445 * 180.26569 * 3 2 1 5 5 C 1.50706 * 125.42083 * 179.70721 * 4 3 2 6 6 C 1.52999 * 109.47172 * 300.03082 * 5 4 3 7 7 C 1.52999 * 109.46800 * 60.02833 * 5 4 3 8 8 O 1.33663 * 109.15743 * 359.73761 * 4 3 2 9 9 C 1.35347 * 107.68249 * 359.97438 * 8 4 3 10 10 C 1.46725 * 126.64180 * 180.02562 * 9 8 4 11 11 O 1.21682 * 119.99643 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00128 * 0.02657 * 10 9 8 13 13 C 1.46504 * 119.99981 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47036 * 180.02562 * 13 12 10 15 15 H 1.09002 * 110.78272 * 51.75735 * 14 13 12 16 16 C 1.54327 * 110.71739 * 288.52195 * 14 13 12 17 17 N 1.47014 * 107.27187 * 219.44553 * 16 14 13 18 18 C 1.36941 * 125.65028 * 178.98893 * 17 16 14 19 19 H 1.08001 * 119.99881 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00004 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00364 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00071 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47118 * 89.99738 * 22 20 18 24 24 H 1.48494 * 109.47296 * 210.00232 * 22 20 18 25 25 H 1.48504 * 109.46862 * 329.99727 * 22 20 18 26 26 C 1.47419 * 108.70437 * 358.94082 * 17 16 14 27 27 C 1.54912 * 104.83306 * 24.12578 * 26 17 16 28 28 H 1.08995 * 111.03828 * 204.90274 * 27 26 17 29 29 O 1.42903 * 110.99758 * 81.06681 * 27 26 17 30 30 H 1.09001 * 109.47461 * 270.18619 * 1 2 3 31 31 H 1.08999 * 109.47287 * 30.19091 * 1 2 3 32 32 H 1.09008 * 109.47024 * 150.18404 * 1 2 3 33 33 H 1.08997 * 109.46759 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47239 * 59.99573 * 6 5 4 35 35 H 1.08995 * 109.46783 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47022 * 300.00143 * 6 5 4 37 37 H 1.08994 * 109.47399 * 300.00151 * 7 5 4 38 38 H 1.09004 * 109.46615 * 60.00349 * 7 5 4 39 39 H 1.08995 * 109.47023 * 179.97438 * 7 5 4 40 40 H 0.97000 * 119.99775 * 0.02562 * 12 10 9 41 41 H 1.08996 * 109.46660 * 60.00162 * 13 12 10 42 42 H 1.08998 * 109.47245 * 300.00289 * 13 12 10 43 43 H 1.08999 * 109.88583 * 338.86569 * 16 14 13 44 44 H 1.09001 * 109.88372 * 100.02571 * 16 14 13 45 45 H 0.96996 * 119.99935 * 179.97438 * 21 20 18 46 46 H 1.09009 * 110.36844 * 265.29198 * 26 17 16 47 47 H 1.09002 * 110.37005 * 142.96697 * 26 17 16 48 48 H 0.96700 * 114.00311 * 67.80834 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5452 0.6899 -0.0057 5 6 4.7440 1.6031 -0.0140 6 6 4.7057 2.4838 -1.2645 7 6 4.7195 2.4880 1.2339 8 8 3.5890 -0.6460 -0.0038 9 6 2.3136 -1.0992 0.0040 10 6 1.8827 -2.5017 0.0093 11 8 0.6967 -2.7736 0.0158 12 7 2.8004 -3.4887 0.0069 13 6 2.3701 -4.8891 0.0127 14 6 3.5991 -5.8003 0.0091 15 1 4.2894 -5.5218 0.8054 16 6 4.3041 -5.7607 -1.3631 17 7 4.7422 -7.1305 -1.6685 18 6 5.3921 -7.5254 -2.8073 19 1 5.6233 -6.8022 -3.5754 20 6 5.7536 -8.8551 -2.9745 21 7 5.4722 -9.7364 -2.0382 22 14 6.6395 -9.3940 -4.5283 23 1 8.1062 -9.2788 -4.3271 24 1 6.2908 -10.8049 -4.8329 25 1 6.2254 -8.5265 -5.6603 26 6 4.3671 -8.0083 -0.5451 27 6 3.1797 -7.2882 0.1415 28 1 3.0982 -7.5794 1.1887 29 8 1.9570 -7.5396 -0.5540 30 1 -0.3634 0.0033 1.0276 31 1 -0.3634 0.8882 -0.5168 32 1 -0.3633 -0.8917 -0.5110 33 1 5.6557 1.0058 -0.0180 34 1 3.7939 3.0811 -1.2605 35 1 5.5725 3.1445 -1.2702 36 1 4.7230 1.8533 -2.1535 37 1 3.8078 3.0853 1.2380 38 1 4.7468 1.8605 2.1248 39 1 5.5867 3.1482 1.2282 40 1 3.7458 -3.2718 0.0021 41 1 1.7675 -5.0876 -0.8736 42 1 1.7768 -5.0832 0.9062 43 1 3.6083 -5.4150 -2.1276 44 1 5.1675 -5.0969 -1.3174 45 1 5.7245 -10.6656 -2.1552 46 1 5.2006 -8.1124 0.1497 47 1 4.0558 -8.9853 -0.9146 48 1 1.6548 -8.4566 -0.4996 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958467909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:03 Heat of formation + Delta-G solvation = -73.395241 kcal Electronic energy + Delta-G solvation = -29431.569334 eV Core-core repulsion = 25294.621465 eV Total energy + Delta-G solvation = -4136.947869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -44.60745 -40.90185 -39.77756 -36.96395 -36.55435 -36.31668 -35.92054 -34.01875 -32.24042 -31.43887 -29.66558 -28.80740 -28.11438 -27.23178 -25.73664 -24.78986 -22.99531 -22.28063 -21.78155 -21.39240 -21.14158 -19.36775 -19.06417 -18.15745 -18.03989 -17.26837 -17.10366 -16.83590 -16.34995 -15.82597 -15.77455 -15.55947 -15.43877 -15.09480 -14.65976 -14.47629 -14.31974 -14.18042 -14.07694 -13.96697 -13.68867 -13.35709 -13.18934 -13.09560 -13.05384 -12.73147 -12.67380 -12.35125 -12.32685 -12.21928 -12.07548 -11.99447 -11.89727 -11.85019 -11.83011 -11.69383 -11.23380 -10.82466 -10.66741 -10.39178 -9.87823 -8.87363 -7.80261 -5.22645 -0.35722 1.20860 1.24388 1.45318 1.46631 1.55334 1.88478 1.99914 2.47630 2.74585 3.25958 3.33486 3.53812 3.56425 3.58255 3.86829 3.91448 3.91998 3.97080 4.02304 4.09778 4.35917 4.40339 4.42047 4.57541 4.61694 4.65274 4.75011 4.78621 4.78790 4.79624 4.87421 4.89481 4.91701 4.96999 5.06288 5.14801 5.23374 5.30143 5.30763 5.37839 5.38597 5.49426 5.76337 6.17943 6.28054 6.48269 6.85826 6.97267 7.10141 7.76422 8.38994 9.21855 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.002536 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.396791 B =11037.128992 C =12336.357115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.077 3.923 3 N -0.499 5.499 4 C 0.233 3.767 5 C -0.004 4.004 6 C -0.141 4.141 7 C -0.139 4.139 8 O -0.191 6.191 9 C -0.141 4.141 10 C 0.608 3.392 11 O -0.542 6.542 12 N -0.706 5.706 13 C 0.156 3.844 14 C -0.092 4.092 15 H 0.114 0.886 16 C 0.142 3.858 17 N -0.620 5.620 18 C -0.238 4.238 19 H 0.075 0.925 20 C -0.064 4.064 21 N -0.947 5.947 22 Si 0.978 3.022 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.274 1.274 26 C 0.126 3.874 27 C 0.095 3.905 28 H 0.092 0.908 29 O -0.569 6.569 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.413 0.587 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.013 0.987 44 H 0.028 0.972 45 H 0.248 0.752 46 H 0.002 0.998 47 H 0.081 0.919 48 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.000 22.681 8.905 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.047 4.047 3 N -0.229 5.229 4 C 0.027 3.973 5 C -0.023 4.023 6 C -0.199 4.199 7 C -0.197 4.197 8 O -0.079 6.079 9 C -0.196 4.196 10 C 0.394 3.606 11 O -0.422 6.422 12 N -0.357 5.357 13 C 0.033 3.967 14 C -0.111 4.111 15 H 0.132 0.868 16 C 0.016 3.984 17 N -0.346 5.346 18 C -0.367 4.367 19 H 0.093 0.907 20 C -0.257 4.257 21 N -0.597 5.597 22 Si 0.806 3.194 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.199 1.199 26 C 0.001 3.999 27 C 0.034 3.966 28 H 0.110 0.890 29 O -0.376 6.376 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.138 0.862 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.249 0.751 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.031 0.969 44 H 0.046 0.954 45 H 0.058 0.942 46 H 0.020 0.980 47 H 0.099 0.901 48 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.830 23.503 8.669 25.342 hybrid contribution 1.174 -2.017 -0.836 2.479 sum -2.656 21.487 7.833 23.023 Atomic orbital electron populations 1.20412 0.84210 1.04466 1.04360 1.22454 0.99269 0.86460 0.96519 1.70324 1.00835 1.30749 1.20977 1.27568 0.96555 0.78974 0.94163 1.20156 0.89450 0.93033 0.99676 1.21857 1.04298 0.99293 0.94423 1.21846 1.04259 0.99222 0.94361 1.84456 1.29244 1.24461 1.69715 1.22745 0.81980 0.95964 1.18921 1.16381 0.85551 0.81773 0.76868 1.90839 1.16649 1.82409 1.52268 1.45920 1.10189 1.06253 1.73297 1.21060 0.95724 0.77370 1.02588 1.22457 0.96445 0.94016 0.98166 0.86782 1.21442 0.95494 0.87050 0.94379 1.44644 1.67514 1.04135 1.18334 1.19402 1.28644 0.93368 0.95296 0.90716 1.25554 1.02703 0.95985 1.01421 1.69982 1.53064 1.02096 1.34546 0.85083 0.78083 0.77044 0.79145 1.21198 1.21811 1.19914 1.22465 0.93066 0.96362 0.87993 1.23093 0.84544 0.93896 0.95023 0.88996 1.86373 1.39389 1.34205 1.77667 0.88967 0.89028 0.89794 0.86236 0.92051 0.88040 0.92923 0.92085 0.92559 0.88089 0.75137 0.92327 0.90093 0.96905 0.95379 0.94247 0.98031 0.90150 0.76178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.67 9.87 71.23 0.70 -0.97 16 2 C 0.08 1.99 7.16 41.83 0.30 2.29 16 3 N -0.50 -11.96 11.26 -291.06 -3.28 -15.24 16 4 C 0.23 4.86 6.82 88.29 0.60 5.47 16 5 C 0.00 -0.05 3.39 -11.54 -0.04 -0.09 16 6 C -0.14 -1.47 9.18 71.98 0.66 -0.81 16 7 C -0.14 -1.32 9.18 71.98 0.66 -0.65 16 8 O -0.19 -4.63 10.57 -7.10 -0.08 -4.70 16 9 C -0.14 -3.85 7.18 24.05 0.17 -3.67 16 10 C 0.61 18.05 7.79 86.46 0.67 18.72 16 11 O -0.54 -18.50 14.80 -4.29 -0.06 -18.56 16 12 N -0.71 -19.19 5.47 -467.04 -2.55 -21.74 16 13 C 0.16 4.66 4.50 86.38 0.39 5.05 16 14 C -0.09 -2.93 2.89 -9.61 -0.03 -2.96 16 15 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 16 C 0.14 5.80 6.75 86.73 0.59 6.38 16 17 N -0.62 -31.66 3.39 -691.99 -2.35 -34.01 16 18 C -0.24 -13.42 10.27 84.03 0.86 -12.55 16 19 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 20 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 21 N -0.95 -55.15 10.09 21.65 0.22 -54.93 16 22 Si 0.98 45.59 29.55 68.60 2.03 47.62 16 23 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 26 C 0.13 5.91 5.62 86.86 0.49 6.40 16 27 C 0.09 3.30 4.17 31.98 0.13 3.43 16 28 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 29 O -0.57 -20.14 12.33 -148.98 -1.84 -21.98 16 30 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 2.04 6.48 -2.38 -0.02 2.02 16 33 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 39 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.41 9.82 8.27 -92.71 -0.77 9.05 16 41 H 0.06 2.10 7.52 -2.39 -0.02 2.08 16 42 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.01 0.57 7.68 -2.39 -0.02 0.55 16 44 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 46 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 47 H 0.08 4.29 5.88 -2.39 -0.01 4.27 16 48 H 0.39 11.21 9.12 -74.06 -0.68 10.54 16 Total: -1.00 -72.84 394.09 -1.73 -74.57 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: -0.45 Total: 26.09 kcal Atomic # 6 Polarization: 16.27 SS G_CDS: 6.63 Total: 22.90 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -7.96 Total: -125.93 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -1.98 Total: -45.25 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -72.84 -1.73 -74.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958467909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.172 kcal (2) G-P(sol) polarization free energy of solvation -72.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds