Wall clock time and date at job start Tue Mar 31 2020 20:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33688 * 126.27647 * 2 1 4 4 C 1.30619 * 109.00157 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.42854 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46664 * 299.97015 * 5 4 3 7 7 C 1.53001 * 109.47075 * 59.96847 * 5 4 3 8 8 O 1.33669 * 109.14834 * 359.74937 * 4 3 2 9 9 C 1.35344 * 107.68325 * 0.39682 * 8 4 3 10 10 C 1.46726 * 126.63866 * 179.86871 * 9 8 4 11 11 O 1.21686 * 119.99365 * 179.69102 * 10 9 8 12 12 N 1.34773 * 120.00390 * 359.69407 * 10 9 8 13 13 C 1.46497 * 120.00288 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47260 * 180.02562 * 13 12 10 15 15 H 1.09005 * 110.63876 * 303.31300 * 14 13 12 16 16 C 1.54319 * 110.72026 * 66.45976 * 14 13 12 17 17 N 1.47019 * 107.27411 * 140.73488 * 16 14 13 18 18 C 1.36933 * 125.65365 * 181.02085 * 17 16 14 19 19 H 1.08005 * 119.99346 * 13.62994 * 18 17 16 20 20 C 1.38803 * 120.00505 * 193.62301 * 18 17 16 21 21 N 1.31626 * 119.99731 * 27.27804 * 20 18 17 22 22 Si 1.86804 * 120.00452 * 207.27269 * 20 18 17 23 23 H 1.48494 * 109.46849 * 90.00056 * 22 20 18 24 24 H 1.48503 * 109.46862 * 330.00133 * 22 20 18 25 25 H 1.48496 * 109.47029 * 210.00372 * 22 20 18 26 26 C 1.47429 * 108.70035 * 1.28221 * 17 16 14 27 27 C 1.55122 * 104.72375 * 335.55720 * 26 17 16 28 28 H 1.09002 * 111.19237 * 279.18719 * 27 26 17 29 29 O 1.42902 * 110.94245 * 155.28823 * 27 26 17 30 30 H 1.09005 * 109.46788 * 269.97540 * 1 2 3 31 31 H 1.08993 * 109.47126 * 29.97194 * 1 2 3 32 32 H 1.09000 * 109.47364 * 149.97895 * 1 2 3 33 33 H 1.09002 * 109.46936 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.47070 * 60.00540 * 6 5 4 35 35 H 1.09006 * 109.47167 * 179.97438 * 6 5 4 36 36 H 1.08993 * 109.47732 * 299.99926 * 6 5 4 37 37 H 1.09000 * 109.46884 * 180.02562 * 7 5 4 38 38 H 1.09001 * 109.47285 * 300.00384 * 7 5 4 39 39 H 1.09005 * 109.46669 * 60.00377 * 7 5 4 40 40 H 0.97003 * 119.99585 * 359.97438 * 12 10 9 41 41 H 1.09003 * 109.46590 * 60.00215 * 13 12 10 42 42 H 1.08997 * 109.47229 * 300.00877 * 13 12 10 43 43 H 1.09000 * 109.88113 * 21.31392 * 16 14 13 44 44 H 1.09006 * 110.00857 * 260.22355 * 16 14 13 45 45 H 0.96994 * 119.99479 * 5.84381 * 21 20 18 46 46 H 1.09001 * 110.36546 * 94.48417 * 26 17 16 47 47 H 1.08995 * 110.36676 * 216.80510 * 26 17 16 48 48 H 0.96703 * 114.00123 * 67.95196 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 -0.0006 5 6 4.7441 1.6030 -0.0002 6 6 4.7128 2.4861 -1.2492 7 6 4.7126 2.4855 1.2493 8 8 3.5890 -0.6461 0.0046 9 6 2.3136 -1.0992 -0.0004 10 6 1.8826 -2.5017 -0.0002 11 8 0.6966 -2.7736 0.0005 12 7 2.8003 -3.4887 -0.0008 13 6 2.3700 -4.8891 -0.0001 14 6 3.5990 -5.8003 -0.0003 15 1 4.2409 -5.5795 -0.8532 16 6 4.3816 -5.6619 1.3225 17 7 4.8430 -7.0060 1.6994 18 6 5.5590 -7.3178 2.8242 19 1 5.6433 -6.6000 3.6268 20 6 6.1763 -8.5562 2.9330 21 7 6.5488 -9.2033 1.8490 22 14 6.4786 -9.3046 4.6177 23 1 5.3085 -10.1307 5.0095 24 1 6.6744 -8.2201 5.6131 25 1 7.6932 -10.1576 4.5697 26 6 4.4126 -7.9616 0.6626 27 6 3.1796 -7.2942 -0.0013 28 1 2.2799 -7.4478 0.5946 29 8 2.9955 -7.7736 -1.3348 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 5.6558 1.0056 -0.0004 34 1 3.8010 3.0835 -1.2491 35 1 5.5797 3.1470 -1.2488 36 1 4.7352 1.8575 -2.1394 37 1 5.5795 3.1463 1.2493 38 1 3.8009 3.0828 1.2494 39 1 4.7349 1.8563 2.1391 40 1 3.7458 -3.2719 -0.0018 41 1 1.7713 -5.0856 -0.8895 42 1 1.7728 -5.0852 0.8904 43 1 3.7293 -5.2625 2.0990 44 1 5.2377 -5.0019 1.1820 45 1 6.4698 -8.7796 0.9801 46 1 5.2064 -8.1102 -0.0694 47 1 4.1308 -8.9119 1.1160 48 1 2.7327 -8.7029 -1.3859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958467911.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:16 Heat of formation + Delta-G solvation = -53.107409 kcal Electronic energy + Delta-G solvation = -29361.074108 eV Core-core repulsion = 25225.005986 eV Total energy + Delta-G solvation = -4136.068123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.70717 -39.78538 -38.46230 -36.27660 -35.69007 -35.31818 -34.79989 -32.49763 -31.28850 -29.88088 -28.20747 -27.65864 -27.64655 -25.56016 -24.53933 -23.53998 -21.98163 -21.06424 -20.72452 -20.33094 -20.03774 -18.30672 -17.64866 -17.20957 -17.06121 -16.51459 -16.02681 -15.37890 -14.97778 -14.87622 -14.57630 -14.43104 -14.06507 -13.72951 -13.64363 -13.58995 -13.44050 -13.29962 -13.08457 -12.64601 -12.56970 -12.51637 -12.27308 -12.17005 -12.04934 -11.78148 -11.55986 -11.24562 -11.18315 -11.02284 -10.98914 -10.78485 -10.57737 -10.39706 -10.09846 -10.03406 -9.79446 -9.40031 -9.33030 -8.93057 -8.50819 -7.07228 -6.17659 -3.22466 0.58853 2.10171 2.14532 2.92483 2.97791 3.47093 3.48808 3.54203 3.65554 4.29588 4.36095 4.42289 4.53023 4.55149 4.57373 4.73059 4.85438 5.00456 5.15278 5.18459 5.19587 5.20966 5.29230 5.35440 5.36252 5.46181 5.46515 5.50959 5.62575 5.64111 5.67708 5.72683 5.75319 5.80085 5.82690 5.97281 6.08655 6.12201 6.24188 6.42206 6.60115 6.76795 6.87062 7.17229 7.41395 7.65605 7.89400 7.91940 8.38831 8.91985 9.72081 10.23544 11.15379 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.002569 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.104799 B =10895.432189 C =12112.991791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.081 3.919 3 N -0.484 5.484 4 C 0.226 3.774 5 C -0.001 4.001 6 C -0.144 4.144 7 C -0.144 4.144 8 O -0.187 6.187 9 C -0.119 4.119 10 C 0.609 3.391 11 O -0.517 6.517 12 N -0.711 5.711 13 C 0.134 3.866 14 C -0.105 4.105 15 H 0.089 0.911 16 C 0.141 3.859 17 N -0.601 5.601 18 C -0.339 4.339 19 H 0.069 0.931 20 C -0.025 4.025 21 N -0.919 5.919 22 Si 1.069 2.931 23 H -0.293 1.293 24 H -0.292 1.292 25 H -0.289 1.289 26 C 0.119 3.881 27 C 0.092 3.908 28 H 0.067 0.933 29 O -0.565 6.565 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.407 0.593 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.032 0.968 44 H 0.026 0.974 45 H 0.270 0.730 46 H 0.036 0.964 47 H 0.057 0.943 48 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.001 20.275 -6.273 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.043 4.043 3 N -0.213 5.213 4 C 0.020 3.980 5 C -0.021 4.021 6 C -0.201 4.201 7 C -0.202 4.202 8 O -0.073 6.073 9 C -0.174 4.174 10 C 0.394 3.606 11 O -0.395 6.395 12 N -0.361 5.361 13 C 0.011 3.989 14 C -0.125 4.125 15 H 0.107 0.893 16 C 0.015 3.985 17 N -0.329 5.329 18 C -0.466 4.466 19 H 0.087 0.913 20 C -0.227 4.227 21 N -0.561 5.561 22 Si 0.898 3.102 23 H -0.220 1.220 24 H -0.218 1.218 25 H -0.216 1.216 26 C -0.007 4.007 27 C 0.031 3.969 28 H 0.085 0.915 29 O -0.370 6.370 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.242 0.758 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.049 0.951 44 H 0.044 0.956 45 H 0.081 0.919 46 H 0.054 0.946 47 H 0.075 0.925 48 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.183 19.886 -5.523 21.853 hybrid contribution 0.187 0.179 -0.586 0.641 sum -6.996 20.065 -6.109 22.111 Atomic orbital electron populations 1.20386 0.85248 1.04314 1.03757 1.22068 0.98334 0.86357 0.97563 1.70273 1.00251 1.30938 1.19851 1.26591 0.95690 0.79137 0.96584 1.19802 0.90476 0.93180 0.98622 1.21849 1.03564 0.99377 0.95348 1.21856 1.03552 0.99403 0.95397 1.84468 1.29762 1.23759 1.69335 1.22921 0.81339 0.96299 1.16828 1.16279 0.85785 0.81276 0.77286 1.90854 1.15658 1.81897 1.51099 1.45930 1.10001 1.06537 1.73646 1.21495 0.96661 0.77948 1.02842 1.22408 0.96214 0.93727 1.00117 0.89289 1.21387 0.95487 0.89664 0.91934 1.44402 1.63797 1.00673 1.24016 1.19811 1.30091 1.03780 0.92944 0.91307 1.25769 0.96313 0.95588 1.04990 1.70770 1.43308 1.42449 0.99535 0.83462 0.76466 0.75793 0.74465 1.22003 1.21837 1.21553 1.22219 0.92871 0.94070 0.91521 1.23085 0.98080 0.92937 0.82769 0.91494 1.86411 1.92040 1.31396 1.27179 0.89976 0.90522 0.88608 0.87966 0.91074 0.90684 0.92117 0.90671 0.91075 0.92027 0.75841 0.90553 0.90700 0.95055 0.95593 0.91862 0.94629 0.92510 0.77447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.87 36.00 0.36 -0.50 16 2 C 0.08 1.05 7.16 -82.47 -0.59 0.46 16 3 N -0.48 -5.97 11.26 -7.07 -0.08 -6.05 16 4 C 0.23 2.51 6.82 -12.79 -0.09 2.42 16 5 C 0.00 -0.01 3.39 -91.77 -0.31 -0.32 16 6 C -0.14 -0.87 9.18 37.16 0.34 -0.53 16 7 C -0.14 -0.91 9.18 37.16 0.34 -0.57 16 8 O -0.19 -2.35 10.57 4.41 0.05 -2.31 16 9 C -0.12 -1.62 7.18 -36.84 -0.26 -1.89 16 10 C 0.61 8.89 7.79 -12.83 -0.10 8.79 16 11 O -0.52 -8.46 14.79 5.20 0.08 -8.38 16 12 N -0.71 -9.79 5.40 -61.61 -0.33 -10.12 16 13 C 0.13 1.96 5.01 -4.04 -0.02 1.94 16 14 C -0.11 -1.76 2.74 -88.79 -0.24 -2.00 16 15 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 16 C 0.14 2.82 6.52 -3.07 -0.02 2.80 16 17 N -0.60 -14.91 3.33 -169.94 -0.57 -15.47 16 18 C -0.34 -9.44 10.05 -15.06 -0.15 -9.59 16 19 H 0.07 1.91 7.96 -52.48 -0.42 1.50 16 20 C -0.03 -0.71 5.09 -17.43 -0.09 -0.80 16 21 N -0.92 -27.40 12.82 55.49 0.71 -26.69 16 22 Si 1.07 25.10 30.00 -169.99 -5.10 20.00 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.12 2.69 4.96 -2.41 -0.01 2.68 16 27 C 0.09 1.62 3.89 -24.47 -0.10 1.52 16 28 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 29 O -0.57 -8.98 13.47 -35.23 -0.47 -9.45 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.10 6.47 -51.93 -0.34 0.76 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.41 5.16 8.12 -40.82 -0.33 4.83 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 43 H 0.03 0.63 7.77 -51.93 -0.40 0.22 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.27 8.04 5.83 -40.82 -0.24 7.80 16 46 H 0.04 0.88 6.84 -51.93 -0.36 0.52 16 47 H 0.06 1.39 7.73 -51.93 -0.40 0.99 16 48 H 0.38 4.49 9.12 45.56 0.42 4.91 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -33.91 395.44 -7.48 -41.39 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.77 Total: 6.71 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -0.95 Total: 4.41 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.27 Total: -58.33 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.35 Total: -20.15 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.10 Total: 20.00 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.91 -7.48 -41.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958467911.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.716 kcal (2) G-P(sol) polarization free energy of solvation -33.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds