Wall clock time and date at job start Tue Mar 31 2020 20:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33688 * 126.27647 * 2 1 4 4 C 1.30619 * 109.00157 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.42854 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46664 * 299.97015 * 5 4 3 7 7 C 1.53001 * 109.47075 * 59.96847 * 5 4 3 8 8 O 1.33669 * 109.14834 * 359.74937 * 4 3 2 9 9 C 1.35344 * 107.68325 * 0.39682 * 8 4 3 10 10 C 1.46726 * 126.63866 * 179.86871 * 9 8 4 11 11 O 1.21686 * 119.99365 * 179.69102 * 10 9 8 12 12 N 1.34773 * 120.00390 * 359.69407 * 10 9 8 13 13 C 1.46497 * 120.00288 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47260 * 180.02562 * 13 12 10 15 15 H 1.09005 * 110.63876 * 303.31300 * 14 13 12 16 16 C 1.54319 * 110.72026 * 66.45976 * 14 13 12 17 17 N 1.47019 * 107.27411 * 140.73488 * 16 14 13 18 18 C 1.36933 * 125.65365 * 181.02085 * 17 16 14 19 19 H 1.08005 * 119.99346 * 13.62994 * 18 17 16 20 20 C 1.38803 * 120.00505 * 193.62301 * 18 17 16 21 21 N 1.31626 * 119.99731 * 27.27804 * 20 18 17 22 22 Si 1.86804 * 120.00452 * 207.27269 * 20 18 17 23 23 H 1.48494 * 109.46849 * 90.00056 * 22 20 18 24 24 H 1.48503 * 109.46862 * 330.00133 * 22 20 18 25 25 H 1.48496 * 109.47029 * 210.00372 * 22 20 18 26 26 C 1.47429 * 108.70035 * 1.28221 * 17 16 14 27 27 C 1.55122 * 104.72375 * 335.55720 * 26 17 16 28 28 H 1.09002 * 111.19237 * 279.18719 * 27 26 17 29 29 O 1.42902 * 110.94245 * 155.28823 * 27 26 17 30 30 H 1.09005 * 109.46788 * 269.97540 * 1 2 3 31 31 H 1.08993 * 109.47126 * 29.97194 * 1 2 3 32 32 H 1.09000 * 109.47364 * 149.97895 * 1 2 3 33 33 H 1.09002 * 109.46936 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.47070 * 60.00540 * 6 5 4 35 35 H 1.09006 * 109.47167 * 179.97438 * 6 5 4 36 36 H 1.08993 * 109.47732 * 299.99926 * 6 5 4 37 37 H 1.09000 * 109.46884 * 180.02562 * 7 5 4 38 38 H 1.09001 * 109.47285 * 300.00384 * 7 5 4 39 39 H 1.09005 * 109.46669 * 60.00377 * 7 5 4 40 40 H 0.97003 * 119.99585 * 359.97438 * 12 10 9 41 41 H 1.09003 * 109.46590 * 60.00215 * 13 12 10 42 42 H 1.08997 * 109.47229 * 300.00877 * 13 12 10 43 43 H 1.09000 * 109.88113 * 21.31392 * 16 14 13 44 44 H 1.09006 * 110.00857 * 260.22355 * 16 14 13 45 45 H 0.96994 * 119.99479 * 5.84381 * 21 20 18 46 46 H 1.09001 * 110.36546 * 94.48417 * 26 17 16 47 47 H 1.08995 * 110.36676 * 216.80510 * 26 17 16 48 48 H 0.96703 * 114.00123 * 67.95196 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 -0.0006 5 6 4.7441 1.6030 -0.0002 6 6 4.7128 2.4861 -1.2492 7 6 4.7126 2.4855 1.2493 8 8 3.5890 -0.6461 0.0046 9 6 2.3136 -1.0992 -0.0004 10 6 1.8826 -2.5017 -0.0002 11 8 0.6966 -2.7736 0.0005 12 7 2.8003 -3.4887 -0.0008 13 6 2.3700 -4.8891 -0.0001 14 6 3.5990 -5.8003 -0.0003 15 1 4.2409 -5.5795 -0.8532 16 6 4.3816 -5.6619 1.3225 17 7 4.8430 -7.0060 1.6994 18 6 5.5590 -7.3178 2.8242 19 1 5.6433 -6.6000 3.6268 20 6 6.1763 -8.5562 2.9330 21 7 6.5488 -9.2033 1.8490 22 14 6.4786 -9.3046 4.6177 23 1 5.3085 -10.1307 5.0095 24 1 6.6744 -8.2201 5.6131 25 1 7.6932 -10.1576 4.5697 26 6 4.4126 -7.9616 0.6626 27 6 3.1796 -7.2942 -0.0013 28 1 2.2799 -7.4478 0.5946 29 8 2.9955 -7.7736 -1.3348 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 5.6558 1.0056 -0.0004 34 1 3.8010 3.0835 -1.2491 35 1 5.5797 3.1470 -1.2488 36 1 4.7352 1.8575 -2.1394 37 1 5.5795 3.1463 1.2493 38 1 3.8009 3.0828 1.2494 39 1 4.7349 1.8563 2.1391 40 1 3.7458 -3.2719 -0.0018 41 1 1.7713 -5.0856 -0.8895 42 1 1.7728 -5.0852 0.8904 43 1 3.7293 -5.2625 2.0990 44 1 5.2377 -5.0019 1.1820 45 1 6.4698 -8.7796 0.9801 46 1 5.2064 -8.1102 -0.0694 47 1 4.1308 -8.9119 1.1160 48 1 2.7327 -8.7029 -1.3859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958467911.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:15 Heat of formation + Delta-G solvation = -80.287810 kcal Electronic energy + Delta-G solvation = -29362.252739 eV Core-core repulsion = 25225.005986 eV Total energy + Delta-G solvation = -4137.246753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -44.63827 -40.99992 -39.95308 -37.00294 -36.86827 -36.62712 -36.02451 -34.23204 -32.26846 -31.42475 -29.69529 -28.90065 -28.13607 -27.10530 -25.76315 -24.85900 -23.04838 -22.40966 -21.84230 -21.47077 -21.38752 -19.74317 -19.30588 -18.45923 -18.15244 -17.35311 -17.20747 -16.68081 -16.47404 -15.89458 -15.74747 -15.63074 -15.39223 -15.36388 -15.05989 -14.58887 -14.32939 -14.23713 -14.09899 -14.04737 -13.92927 -13.67408 -13.37285 -13.10984 -12.82607 -12.75369 -12.66089 -12.46160 -12.38859 -12.35061 -12.24537 -12.01741 -11.90423 -11.86627 -11.77596 -11.64133 -11.34012 -10.99434 -10.59379 -10.46019 -9.91765 -9.11622 -8.37801 -5.39042 -0.39262 1.17780 1.21372 1.56803 1.63839 1.81715 1.84305 1.90842 2.58405 2.71466 2.98063 3.17772 3.39249 3.45107 3.53786 3.58787 3.70647 3.89033 3.91562 3.99915 4.04630 4.21148 4.23024 4.33564 4.38415 4.39908 4.58676 4.63794 4.72234 4.73685 4.76007 4.76608 4.77157 4.87297 4.89685 4.91824 5.02547 5.05490 5.06525 5.16115 5.21123 5.27906 5.35446 5.58673 6.10726 6.24674 6.44477 6.75138 6.78713 6.82747 7.63113 8.18319 8.94937 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.002569 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.104799 B =10895.432189 C =12112.991791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.079 3.921 3 N -0.499 5.499 4 C 0.233 3.767 5 C -0.005 4.005 6 C -0.139 4.139 7 C -0.141 4.141 8 O -0.193 6.193 9 C -0.144 4.144 10 C 0.611 3.389 11 O -0.539 6.539 12 N -0.707 5.707 13 C 0.147 3.853 14 C -0.089 4.089 15 H 0.091 0.909 16 C 0.140 3.860 17 N -0.624 5.624 18 C -0.348 4.348 19 H 0.064 0.936 20 C -0.077 4.077 21 N -0.947 5.947 22 Si 1.119 2.881 23 H -0.283 1.283 24 H -0.272 1.272 25 H -0.293 1.293 26 C 0.124 3.876 27 C 0.111 3.889 28 H 0.083 0.917 29 O -0.565 6.565 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.412 0.588 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.025 0.975 45 H 0.257 0.743 46 H 0.010 0.990 47 H 0.029 0.971 48 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.314 21.921 -6.164 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.045 4.045 3 N -0.228 5.228 4 C 0.028 3.972 5 C -0.024 4.024 6 C -0.197 4.197 7 C -0.198 4.198 8 O -0.081 6.081 9 C -0.199 4.199 10 C 0.397 3.603 11 O -0.418 6.418 12 N -0.357 5.357 13 C 0.023 3.977 14 C -0.108 4.108 15 H 0.110 0.890 16 C 0.015 3.985 17 N -0.352 5.352 18 C -0.476 4.476 19 H 0.082 0.918 20 C -0.273 4.273 21 N -0.590 5.590 22 Si 0.943 3.057 23 H -0.210 1.210 24 H -0.197 1.197 25 H -0.220 1.220 26 C -0.002 4.002 27 C 0.050 3.950 28 H 0.101 0.899 29 O -0.372 6.372 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.248 0.752 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.043 0.957 45 H 0.068 0.932 46 H 0.028 0.972 47 H 0.048 0.952 48 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -7.515 21.556 -5.432 23.465 hybrid contribution 0.326 -0.225 -0.661 0.770 sum -7.190 21.330 -6.092 23.319 Atomic orbital electron populations 1.20426 0.84048 1.04666 1.04310 1.22478 0.99322 0.86381 0.96318 1.70325 1.00780 1.30768 1.20958 1.27561 0.96577 0.78938 0.94128 1.20158 0.89438 0.93061 0.99752 1.21847 1.04323 0.99222 0.94295 1.21856 1.04337 0.99257 0.94370 1.84464 1.29363 1.24523 1.69718 1.22742 0.81966 0.96016 1.19129 1.16333 0.85493 0.81691 0.76752 1.90835 1.16418 1.82380 1.52202 1.45839 1.10265 1.06100 1.73522 1.21291 0.95317 0.77925 1.03128 1.22229 0.96637 0.93712 0.98213 0.89023 1.21501 0.95757 0.87475 0.93756 1.44665 1.63523 1.03117 1.23916 1.20073 1.29741 1.03868 0.93925 0.91767 1.27146 0.96320 0.96366 1.07455 1.70882 1.45669 1.42905 0.99589 0.82797 0.76318 0.75591 0.70989 1.20980 1.19687 1.21990 1.22133 0.94283 0.93260 0.90572 1.22794 0.96149 0.92696 0.83387 0.89947 1.86386 1.91907 1.33199 1.25705 0.89216 0.88892 0.89446 0.86416 0.91973 0.88095 0.92643 0.88063 0.91947 0.92907 0.75222 0.89766 0.90899 0.94623 0.95665 0.93246 0.97185 0.95221 0.75258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 9.87 71.23 0.70 -0.89 16 2 C 0.08 2.00 7.16 41.83 0.30 2.30 16 3 N -0.50 -11.86 11.26 -291.06 -3.28 -15.14 16 4 C 0.23 4.92 6.82 88.29 0.60 5.52 16 5 C 0.00 -0.06 3.39 -11.54 -0.04 -0.10 16 6 C -0.14 -1.38 9.18 71.98 0.66 -0.72 16 7 C -0.14 -1.50 9.18 71.98 0.66 -0.83 16 8 O -0.19 -4.73 10.57 -7.13 -0.08 -4.80 16 9 C -0.14 -3.85 7.18 24.05 0.17 -3.68 16 10 C 0.61 17.42 7.79 86.46 0.67 18.09 16 11 O -0.54 -17.27 14.79 -4.31 -0.06 -17.34 16 12 N -0.71 -18.68 5.40 -467.05 -2.52 -21.20 16 13 C 0.15 4.06 5.01 86.38 0.43 4.49 16 14 C -0.09 -2.85 2.74 -9.61 -0.03 -2.88 16 15 H 0.09 2.94 8.14 -2.38 -0.02 2.92 16 16 C 0.14 5.54 6.52 86.73 0.57 6.11 16 17 N -0.62 -31.31 3.33 -691.57 -2.30 -33.61 16 18 C -0.35 -19.59 10.05 84.03 0.84 -18.74 16 19 H 0.06 3.59 7.96 -2.91 -0.02 3.57 16 20 C -0.08 -4.40 5.09 84.86 0.43 -3.97 16 21 N -0.95 -57.84 12.82 21.65 0.28 -57.56 16 22 Si 1.12 50.78 30.00 68.60 2.06 52.84 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 C 0.12 5.69 4.96 86.93 0.43 6.12 16 27 C 0.11 3.77 3.89 32.06 0.12 3.90 16 28 H 0.08 2.62 8.05 -2.39 -0.02 2.60 16 29 O -0.56 -16.93 13.47 -148.98 -2.01 -18.94 16 30 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.09 1.97 6.47 -2.39 -0.02 1.95 16 33 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.41 10.04 8.12 -92.71 -0.75 9.28 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.07 2.09 8.06 -2.39 -0.02 2.07 16 43 H 0.04 1.39 7.77 -2.39 -0.02 1.38 16 44 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.26 15.89 5.83 -92.71 -0.54 15.35 16 46 H 0.01 0.53 6.84 -2.39 -0.02 0.51 16 47 H 0.03 1.49 7.73 -2.39 -0.02 1.47 16 48 H 0.40 8.71 9.12 -74.05 -0.68 8.04 16 Total: -1.00 -73.92 395.44 -1.58 -75.50 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -0.21 Total: 25.53 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 6.54 Total: 14.72 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -7.82 Total: -127.51 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -2.15 Total: -41.08 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.06 Total: 52.84 kcal Total: -73.92 -1.58 -75.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958467911.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.786 kcal (2) G-P(sol) polarization free energy of solvation -73.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds