Wall clock time and date at job start Tue Mar 31 2020 20:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33691 * 126.27250 * 2 1 4 4 C 1.30618 * 108.99361 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.41941 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47306 * 300.02349 * 5 4 3 7 7 C 1.52999 * 109.47418 * 60.02882 * 5 4 3 8 8 O 1.33668 * 109.15430 * 359.73310 * 4 3 2 9 9 C 1.35339 * 107.68152 * 0.43240 * 8 4 3 10 10 C 1.46725 * 126.64029 * 179.84240 * 9 8 4 11 11 O 1.21688 * 119.99789 * 179.68636 * 10 9 8 12 12 N 1.34779 * 120.00102 * 359.68446 * 10 9 8 13 13 C 1.46492 * 119.99914 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46963 * 180.02562 * 13 12 10 15 15 H 1.08994 * 110.64412 * 56.68520 * 14 13 12 16 16 C 1.54322 * 110.71873 * 293.54189 * 14 13 12 17 17 N 1.47016 * 107.27584 * 219.44305 * 16 14 13 18 18 C 1.36934 * 125.65257 * 178.90450 * 17 16 14 19 19 H 1.08007 * 119.99929 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00235 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00298 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 120.00223 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46691 * 90.00059 * 22 20 18 24 24 H 1.48494 * 109.47236 * 209.99952 * 22 20 18 25 25 H 1.48498 * 109.46785 * 330.00286 * 22 20 18 26 26 C 1.47425 * 108.70144 * 358.94568 * 17 16 14 27 27 C 1.54913 * 104.83172 * 24.12623 * 26 17 16 28 28 H 1.08993 * 111.00353 * 81.06953 * 27 26 17 29 29 O 1.42900 * 111.00214 * 204.91916 * 27 26 17 30 30 H 1.08994 * 109.46923 * 269.95714 * 1 2 3 31 31 H 1.08998 * 109.46872 * 29.96416 * 1 2 3 32 32 H 1.09005 * 109.46588 * 149.95692 * 1 2 3 33 33 H 1.08999 * 109.46937 * 180.02562 * 5 4 3 34 34 H 1.09009 * 109.46575 * 60.00480 * 6 5 4 35 35 H 1.09001 * 109.46953 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47480 * 300.00281 * 6 5 4 37 37 H 1.08998 * 109.47224 * 59.99473 * 7 5 4 38 38 H 1.08996 * 109.47204 * 180.02562 * 7 5 4 39 39 H 1.09009 * 109.46468 * 299.99864 * 7 5 4 40 40 H 0.97002 * 119.99766 * 0.02562 * 12 10 9 41 41 H 1.09000 * 109.47615 * 59.99932 * 13 12 10 42 42 H 1.09002 * 109.47304 * 299.99819 * 13 12 10 43 43 H 1.09005 * 109.88278 * 338.86758 * 16 14 13 44 44 H 1.09004 * 109.88057 * 100.02551 * 16 14 13 45 45 H 0.96994 * 120.00345 * 180.02562 * 21 20 18 46 46 H 1.08996 * 110.36900 * 142.96779 * 26 17 16 47 47 H 1.09002 * 110.36343 * 265.17664 * 26 17 16 48 48 H 0.96697 * 114.00271 * 292.19278 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5453 0.6899 -0.0006 5 6 4.7440 1.6031 -0.0013 6 6 4.7117 2.4862 -1.2504 7 6 4.7137 2.4856 1.2482 8 8 3.5890 -0.6461 0.0050 9 6 2.3137 -1.0992 -0.0007 10 6 1.8827 -2.5017 -0.0009 11 8 0.6966 -2.7737 -0.0005 12 7 2.8005 -3.4887 -0.0015 13 6 2.3701 -4.8890 -0.0023 14 6 3.5992 -5.8003 -0.0022 15 1 4.2413 -5.5795 0.8504 16 6 4.3817 -5.6617 -1.3252 17 7 4.8394 -7.0063 -1.7046 18 6 5.5528 -7.3183 -2.8310 19 1 5.8258 -6.5413 -3.5298 20 6 5.9253 -8.6330 -3.0747 21 7 5.5923 -9.5801 -2.2234 22 14 6.8993 -9.0585 -4.6109 23 1 8.3520 -8.9625 -4.3183 24 1 6.5708 -10.4423 -5.0379 25 1 6.5493 -8.1089 -5.6976 26 6 4.4021 -7.9634 -0.6720 27 6 3.1758 -7.2930 -0.0037 28 1 2.2756 -7.4432 -0.5994 29 8 2.9919 -7.7745 1.3291 30 1 -0.3633 -0.0008 1.0276 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3633 -0.8897 -0.5145 33 1 5.6558 1.0058 -0.0021 34 1 3.7999 3.0835 -1.2495 35 1 5.5785 3.1470 -1.2506 36 1 4.7334 1.8575 -2.1405 37 1 4.7367 1.8566 2.1380 38 1 5.5804 3.1465 1.2474 39 1 3.8018 3.0830 1.2489 40 1 3.7460 -3.2719 -0.0014 41 1 1.7722 -5.0849 -0.8923 42 1 1.7723 -5.0859 0.8876 43 1 3.7301 -5.2592 -2.1008 44 1 5.2396 -5.0049 -1.1813 45 1 5.8529 -10.4987 -2.3935 46 1 4.1146 -8.9100 -1.1295 47 1 5.1953 -8.1216 0.0588 48 1 2.7268 -8.7030 1.3788 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958467912.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:20 Heat of formation + Delta-G solvation = -49.583733 kcal Electronic energy + Delta-G solvation = -29327.643465 eV Core-core repulsion = 25191.728141 eV Total energy + Delta-G solvation = -4135.915325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.67779 -39.70684 -38.23776 -36.25603 -35.62115 -35.13485 -34.64174 -32.34085 -31.25750 -29.91723 -28.17177 -27.64416 -27.41206 -25.67274 -24.57155 -23.46295 -21.93917 -21.01952 -20.69509 -20.26786 -19.85173 -18.23231 -17.18056 -17.07894 -16.83083 -16.44860 -15.92910 -15.34606 -15.02636 -14.89267 -14.67850 -14.26807 -14.03431 -13.75378 -13.61207 -13.41585 -13.28306 -13.05363 -12.89842 -12.62986 -12.53627 -12.44664 -12.15090 -12.01682 -11.76846 -11.60985 -11.54095 -11.29556 -11.15925 -11.03321 -10.99408 -10.85598 -10.68815 -10.30811 -10.10405 -9.93043 -9.72451 -9.28038 -9.20792 -8.88386 -8.74933 -6.95806 -5.75537 -3.18331 0.62347 2.13412 2.17467 2.97145 3.04090 3.34550 3.39630 3.41587 3.57328 4.32901 4.37719 4.44558 4.54627 4.59825 4.66166 4.77469 4.96588 5.16143 5.18952 5.19774 5.23649 5.36732 5.38277 5.39826 5.43170 5.48196 5.49002 5.61329 5.65568 5.70694 5.76717 5.83842 5.86755 5.95071 5.98672 6.11524 6.14350 6.26886 6.36908 6.52376 6.74980 7.22335 7.31061 7.45670 7.50087 7.70043 7.95291 8.11573 8.24573 9.10552 9.71279 10.34157 11.28503 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.002579 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.115501 B =10853.135563 C =12211.543180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.080 3.920 3 N -0.483 5.483 4 C 0.225 3.775 5 C -0.001 4.001 6 C -0.144 4.144 7 C -0.144 4.144 8 O -0.186 6.186 9 C -0.117 4.117 10 C 0.607 3.393 11 O -0.517 6.517 12 N -0.710 5.710 13 C 0.133 3.867 14 C -0.106 4.106 15 H 0.087 0.913 16 C 0.140 3.860 17 N -0.601 5.601 18 C -0.225 4.225 19 H 0.079 0.921 20 C -0.010 4.010 21 N -0.923 5.923 22 Si 0.917 3.083 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.281 1.281 26 C 0.128 3.872 27 C 0.082 3.918 28 H 0.062 0.938 29 O -0.569 6.569 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.406 0.594 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.029 0.971 44 H 0.025 0.975 45 H 0.253 0.747 46 H 0.110 0.890 47 H 0.023 0.977 48 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.785 20.460 6.743 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.044 4.044 3 N -0.213 5.213 4 C 0.019 3.981 5 C -0.021 4.021 6 C -0.202 4.202 7 C -0.202 4.202 8 O -0.073 6.073 9 C -0.172 4.172 10 C 0.393 3.607 11 O -0.395 6.395 12 N -0.360 5.360 13 C 0.010 3.990 14 C -0.125 4.125 15 H 0.105 0.895 16 C 0.014 3.986 17 N -0.328 5.328 18 C -0.353 4.353 19 H 0.097 0.903 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.747 3.253 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.003 3.997 27 C 0.022 3.978 28 H 0.080 0.920 29 O -0.374 6.374 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.241 0.759 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.047 0.953 44 H 0.042 0.958 45 H 0.064 0.936 46 H 0.127 0.873 47 H 0.041 0.959 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.499 21.242 6.776 22.965 hybrid contribution 1.251 -1.444 -0.882 2.104 sum -4.248 19.798 5.895 21.089 Atomic orbital electron populations 1.20386 0.85263 1.04371 1.03670 1.22067 0.98331 0.86367 0.97682 1.70271 1.00258 1.30958 1.19825 1.26574 0.95678 0.79161 0.96711 1.19793 0.90493 0.93175 0.98591 1.21854 1.03528 0.99395 0.95420 1.21851 1.03544 0.99386 0.95369 1.84465 1.29782 1.23728 1.69328 1.22950 0.81303 0.96350 1.16642 1.16291 0.85825 0.81266 0.77362 1.90854 1.15676 1.81876 1.51135 1.45962 1.09942 1.06631 1.73504 1.21544 0.96917 0.77802 1.02760 1.22416 0.95975 0.94257 0.99858 0.89474 1.21372 0.95279 0.89729 0.92182 1.44314 1.64123 1.01060 1.23303 1.19088 1.26251 0.92991 0.96976 0.90283 1.24807 1.01144 0.95681 0.98936 1.69756 1.50779 1.00396 1.36211 0.86035 0.79631 0.77553 0.82058 1.21534 1.21560 1.20609 1.22552 0.91303 0.95739 0.90144 1.23304 0.99245 0.92605 0.82677 0.92017 1.86366 1.92080 1.31366 1.27575 0.90049 0.90538 0.88567 0.87978 0.91085 0.90705 0.92016 0.92122 0.90708 0.91085 0.75885 0.90752 0.90652 0.95298 0.95754 0.93584 0.87255 0.95950 0.77555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.87 36.01 0.36 -0.51 16 2 C 0.08 1.04 7.16 -82.46 -0.59 0.45 16 3 N -0.48 -6.00 11.26 -7.07 -0.08 -6.08 16 4 C 0.22 2.49 6.82 -12.80 -0.09 2.41 16 5 C 0.00 -0.01 3.39 -91.77 -0.31 -0.32 16 6 C -0.14 -0.91 9.18 37.16 0.34 -0.56 16 7 C -0.14 -0.87 9.18 37.16 0.34 -0.52 16 8 O -0.19 -2.35 10.57 4.43 0.05 -2.30 16 9 C -0.12 -1.61 7.18 -36.84 -0.26 -1.88 16 10 C 0.61 8.98 7.79 -12.83 -0.10 8.88 16 11 O -0.52 -8.60 14.79 5.20 0.08 -8.53 16 12 N -0.71 -9.92 5.40 -61.60 -0.33 -10.25 16 13 C 0.13 2.00 4.99 -4.04 -0.02 1.98 16 14 C -0.11 -1.81 2.75 -88.78 -0.24 -2.06 16 15 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 16 C 0.14 2.81 6.52 -3.07 -0.02 2.79 16 17 N -0.60 -14.97 3.39 -170.07 -0.58 -15.55 16 18 C -0.23 -6.13 10.27 -15.06 -0.15 -6.29 16 19 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -26.22 10.09 55.49 0.56 -25.66 16 22 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.13 3.01 5.62 -2.53 -0.01 2.99 16 27 C 0.08 1.53 3.88 -24.58 -0.10 1.43 16 28 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 29 O -0.57 -9.60 13.47 -35.23 -0.47 -10.08 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 1.14 6.47 -51.93 -0.34 0.80 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.41 5.18 8.12 -40.82 -0.33 4.84 16 41 H 0.07 1.17 8.06 -51.93 -0.42 0.76 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.03 0.58 7.77 -51.93 -0.40 0.18 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.11 2.85 5.87 -51.93 -0.30 2.55 16 47 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.38 4.92 9.12 45.56 0.42 5.34 16 LS Contribution 395.38 15.07 5.96 5.96 Total: -1.00 -32.52 395.38 -7.64 -40.17 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.84 Total: 7.28 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -0.96 Total: 8.42 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.43 Total: -57.53 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.35 Total: -20.91 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.52 -7.64 -40.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958467912.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.417 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds