Wall clock time and date at job start Tue Mar 31 2020 20:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33691 * 126.27250 * 2 1 4 4 C 1.30618 * 108.99361 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.41941 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47306 * 300.02349 * 5 4 3 7 7 C 1.52999 * 109.47418 * 60.02882 * 5 4 3 8 8 O 1.33668 * 109.15430 * 359.73310 * 4 3 2 9 9 C 1.35339 * 107.68152 * 0.43240 * 8 4 3 10 10 C 1.46725 * 126.64029 * 179.84240 * 9 8 4 11 11 O 1.21688 * 119.99789 * 179.68636 * 10 9 8 12 12 N 1.34779 * 120.00102 * 359.68446 * 10 9 8 13 13 C 1.46492 * 119.99914 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46963 * 180.02562 * 13 12 10 15 15 H 1.08994 * 110.64412 * 56.68520 * 14 13 12 16 16 C 1.54322 * 110.71873 * 293.54189 * 14 13 12 17 17 N 1.47016 * 107.27584 * 219.44305 * 16 14 13 18 18 C 1.36934 * 125.65257 * 178.90450 * 17 16 14 19 19 H 1.08007 * 119.99929 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00235 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00298 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 120.00223 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46691 * 90.00059 * 22 20 18 24 24 H 1.48494 * 109.47236 * 209.99952 * 22 20 18 25 25 H 1.48498 * 109.46785 * 330.00286 * 22 20 18 26 26 C 1.47425 * 108.70144 * 358.94568 * 17 16 14 27 27 C 1.54913 * 104.83172 * 24.12623 * 26 17 16 28 28 H 1.08993 * 111.00353 * 81.06953 * 27 26 17 29 29 O 1.42900 * 111.00214 * 204.91916 * 27 26 17 30 30 H 1.08994 * 109.46923 * 269.95714 * 1 2 3 31 31 H 1.08998 * 109.46872 * 29.96416 * 1 2 3 32 32 H 1.09005 * 109.46588 * 149.95692 * 1 2 3 33 33 H 1.08999 * 109.46937 * 180.02562 * 5 4 3 34 34 H 1.09009 * 109.46575 * 60.00480 * 6 5 4 35 35 H 1.09001 * 109.46953 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47480 * 300.00281 * 6 5 4 37 37 H 1.08998 * 109.47224 * 59.99473 * 7 5 4 38 38 H 1.08996 * 109.47204 * 180.02562 * 7 5 4 39 39 H 1.09009 * 109.46468 * 299.99864 * 7 5 4 40 40 H 0.97002 * 119.99766 * 0.02562 * 12 10 9 41 41 H 1.09000 * 109.47615 * 59.99932 * 13 12 10 42 42 H 1.09002 * 109.47304 * 299.99819 * 13 12 10 43 43 H 1.09005 * 109.88278 * 338.86758 * 16 14 13 44 44 H 1.09004 * 109.88057 * 100.02551 * 16 14 13 45 45 H 0.96994 * 120.00345 * 180.02562 * 21 20 18 46 46 H 1.08996 * 110.36900 * 142.96779 * 26 17 16 47 47 H 1.09002 * 110.36343 * 265.17664 * 26 17 16 48 48 H 0.96697 * 114.00271 * 292.19278 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5453 0.6899 -0.0006 5 6 4.7440 1.6031 -0.0013 6 6 4.7117 2.4862 -1.2504 7 6 4.7137 2.4856 1.2482 8 8 3.5890 -0.6461 0.0050 9 6 2.3137 -1.0992 -0.0007 10 6 1.8827 -2.5017 -0.0009 11 8 0.6966 -2.7737 -0.0005 12 7 2.8005 -3.4887 -0.0015 13 6 2.3701 -4.8890 -0.0023 14 6 3.5992 -5.8003 -0.0022 15 1 4.2413 -5.5795 0.8504 16 6 4.3817 -5.6617 -1.3252 17 7 4.8394 -7.0063 -1.7046 18 6 5.5528 -7.3183 -2.8310 19 1 5.8258 -6.5413 -3.5298 20 6 5.9253 -8.6330 -3.0747 21 7 5.5923 -9.5801 -2.2234 22 14 6.8993 -9.0585 -4.6109 23 1 8.3520 -8.9625 -4.3183 24 1 6.5708 -10.4423 -5.0379 25 1 6.5493 -8.1089 -5.6976 26 6 4.4021 -7.9634 -0.6720 27 6 3.1758 -7.2930 -0.0037 28 1 2.2756 -7.4432 -0.5994 29 8 2.9919 -7.7745 1.3291 30 1 -0.3633 -0.0008 1.0276 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3633 -0.8897 -0.5145 33 1 5.6558 1.0058 -0.0021 34 1 3.7999 3.0835 -1.2495 35 1 5.5785 3.1470 -1.2506 36 1 4.7334 1.8575 -2.1405 37 1 4.7367 1.8566 2.1380 38 1 5.5804 3.1465 1.2474 39 1 3.8018 3.0830 1.2489 40 1 3.7460 -3.2719 -0.0014 41 1 1.7722 -5.0849 -0.8923 42 1 1.7723 -5.0859 0.8876 43 1 3.7301 -5.2592 -2.1008 44 1 5.2396 -5.0049 -1.1813 45 1 5.8529 -10.4987 -2.3935 46 1 4.1146 -8.9100 -1.1295 47 1 5.1953 -8.1216 0.0588 48 1 2.7268 -8.7030 1.3788 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958467912.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:20 Heat of formation + Delta-G solvation = -75.414084 kcal Electronic energy + Delta-G solvation = -29328.763553 eV Core-core repulsion = 25191.728141 eV Total energy + Delta-G solvation = -4137.035413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.61098 -40.92415 -39.76223 -36.97129 -36.70892 -36.50645 -35.94147 -34.09014 -32.25217 -31.46872 -29.55635 -28.78496 -28.11541 -27.26883 -25.72221 -24.78342 -23.01646 -22.35576 -21.78289 -21.40002 -21.28344 -19.42380 -18.87265 -18.32472 -18.12043 -17.33489 -17.15033 -16.98445 -16.42253 -15.83175 -15.68808 -15.60684 -15.32484 -15.01655 -14.77159 -14.47760 -14.27928 -14.22027 -14.06743 -14.00918 -13.70949 -13.36796 -13.27803 -13.12618 -13.08812 -12.77548 -12.73283 -12.44621 -12.35599 -12.32920 -12.21953 -11.99467 -11.92832 -11.89624 -11.82758 -11.50916 -11.24709 -10.84580 -10.75341 -10.41966 -9.88670 -8.95169 -7.81763 -5.27325 -0.36246 1.20624 1.24034 1.46624 1.47813 1.56712 1.87637 1.95905 2.46014 2.74226 3.17447 3.28461 3.48816 3.56243 3.58115 3.70992 3.87506 3.91469 4.02148 4.06916 4.08553 4.35881 4.39425 4.40556 4.43815 4.56110 4.65208 4.68151 4.75289 4.78480 4.78646 4.83487 4.89341 4.91397 4.92098 5.05713 5.10868 5.21809 5.25821 5.29943 5.37617 5.40895 5.46064 5.71928 6.15558 6.23044 6.47590 6.83158 6.88080 7.05656 7.71454 8.33900 9.20063 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.002579 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.115501 B =10853.135563 C =12211.543180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.078 3.922 3 N -0.499 5.499 4 C 0.233 3.767 5 C -0.004 4.004 6 C -0.141 4.141 7 C -0.140 4.140 8 O -0.192 6.192 9 C -0.142 4.142 10 C 0.610 3.390 11 O -0.540 6.540 12 N -0.705 5.705 13 C 0.146 3.854 14 C -0.089 4.089 15 H 0.091 0.909 16 C 0.139 3.861 17 N -0.623 5.623 18 C -0.241 4.241 19 H 0.083 0.917 20 C -0.065 4.065 21 N -0.948 5.948 22 Si 0.981 3.019 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.269 1.269 26 C 0.133 3.867 27 C 0.099 3.901 28 H 0.071 0.929 29 O -0.568 6.568 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.413 0.587 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.033 0.967 44 H 0.032 0.968 45 H 0.249 0.751 46 H 0.080 0.920 47 H -0.008 1.008 48 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 22.460 6.813 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.046 4.046 3 N -0.229 5.229 4 C 0.028 3.972 5 C -0.024 4.024 6 C -0.198 4.198 7 C -0.197 4.197 8 O -0.079 6.079 9 C -0.197 4.197 10 C 0.396 3.604 11 O -0.420 6.420 12 N -0.356 5.356 13 C 0.023 3.977 14 C -0.109 4.109 15 H 0.110 0.890 16 C 0.014 3.986 17 N -0.350 5.350 18 C -0.370 4.370 19 H 0.101 0.899 20 C -0.258 4.258 21 N -0.598 5.598 22 Si 0.809 3.191 23 H -0.214 1.214 24 H -0.219 1.219 25 H -0.194 1.194 26 C 0.007 3.993 27 C 0.038 3.962 28 H 0.089 0.911 29 O -0.375 6.375 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.137 0.863 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.080 0.920 40 H 0.249 0.751 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.098 0.902 47 H 0.010 0.990 48 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -5.136 23.266 6.859 24.793 hybrid contribution 1.178 -1.981 -0.871 2.464 sum -3.958 21.285 5.988 22.462 Atomic orbital electron populations 1.20422 0.84127 1.04552 1.04346 1.22467 0.99296 0.86419 0.96434 1.70325 1.00813 1.30767 1.20970 1.27557 0.96559 0.78963 0.94157 1.20154 0.89466 0.93049 0.99695 1.21856 1.04295 0.99258 0.94415 1.21849 1.04284 0.99239 0.94340 1.84460 1.29301 1.24478 1.69700 1.22733 0.81974 0.95979 1.19006 1.16355 0.85511 0.81722 0.76790 1.90836 1.16508 1.82391 1.52267 1.45843 1.10272 1.06057 1.73388 1.21304 0.95589 0.77969 1.02831 1.22242 0.96434 0.93789 0.98390 0.89033 1.21507 0.95808 0.87651 0.93623 1.44596 1.64113 1.03283 1.23055 1.19457 1.26301 0.93315 0.97879 0.89901 1.25636 1.02537 0.95723 1.01859 1.69997 1.51771 1.00312 1.37714 0.85038 0.78026 0.77047 0.78970 1.21383 1.21894 1.19388 1.22337 0.92370 0.95231 0.89359 1.22971 0.97177 0.92866 0.83185 0.91069 1.86341 1.91963 1.33047 1.26195 0.89036 0.89020 0.89618 0.86309 0.92015 0.88078 0.92852 0.92641 0.88097 0.92044 0.75122 0.91170 0.90116 0.94930 0.94956 0.94166 0.90170 0.99000 0.75541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 9.87 71.24 0.70 -0.92 16 2 C 0.08 1.98 7.16 41.83 0.30 2.28 16 3 N -0.50 -11.88 11.26 -291.05 -3.28 -15.15 16 4 C 0.23 4.87 6.82 88.29 0.60 5.48 16 5 C 0.00 -0.05 3.39 -11.54 -0.04 -0.09 16 6 C -0.14 -1.46 9.18 71.98 0.66 -0.80 16 7 C -0.14 -1.36 9.18 71.98 0.66 -0.70 16 8 O -0.19 -4.65 10.57 -7.07 -0.07 -4.73 16 9 C -0.14 -3.82 7.18 24.05 0.17 -3.65 16 10 C 0.61 17.62 7.79 86.46 0.67 18.29 16 11 O -0.54 -17.69 14.79 -4.31 -0.06 -17.76 16 12 N -0.71 -18.87 5.40 -467.04 -2.52 -21.39 16 13 C 0.15 4.21 4.99 86.38 0.43 4.64 16 14 C -0.09 -2.95 2.75 -9.60 -0.03 -2.98 16 15 H 0.09 2.98 8.14 -2.39 -0.02 2.97 16 16 C 0.14 5.46 6.52 86.73 0.57 6.03 16 17 N -0.62 -31.30 3.39 -691.99 -2.35 -33.64 16 18 C -0.24 -13.21 10.27 84.03 0.86 -12.35 16 19 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 20 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 21 N -0.95 -55.15 10.09 21.65 0.22 -54.94 16 22 Si 0.98 44.73 29.55 68.60 2.03 46.76 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 24 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 C 0.13 6.36 5.62 86.86 0.49 6.85 16 27 C 0.10 3.60 3.88 31.99 0.12 3.72 16 28 H 0.07 2.50 8.05 -2.39 -0.02 2.48 16 29 O -0.57 -18.39 13.47 -148.98 -2.01 -20.39 16 30 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.09 2.00 6.47 -2.38 -0.02 1.98 16 33 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.41 9.98 8.12 -92.71 -0.75 9.23 16 41 H 0.07 2.12 8.06 -2.39 -0.02 2.10 16 42 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.03 1.27 7.77 -2.38 -0.02 1.25 16 44 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 45 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 46 H 0.08 4.32 5.87 -2.39 -0.01 4.31 16 47 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 48 H 0.39 9.78 9.12 -74.06 -0.68 9.11 16 Total: -1.00 -70.51 395.38 -1.84 -72.35 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: -0.44 Total: 26.23 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 6.65 Total: 22.66 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -7.93 Total: -125.13 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -2.15 Total: -42.88 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -70.51 -1.84 -72.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958467912.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.068 kcal (2) G-P(sol) polarization free energy of solvation -70.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds