Wall clock time and date at job start Tue Mar 31 2020 20:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33694 * 126.27350 * 2 1 4 4 C 1.30611 * 108.99250 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.42080 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47054 * 60.02627 * 5 4 3 7 7 C 1.53001 * 109.47518 * 300.02819 * 5 4 3 8 8 O 1.33666 * 109.15751 * 0.23933 * 4 3 2 9 9 C 1.35341 * 107.68125 * 359.61385 * 8 4 3 10 10 C 1.46729 * 126.64182 * 180.18032 * 9 8 4 11 11 O 1.21682 * 119.99941 * 180.23692 * 10 9 8 12 12 N 1.34770 * 119.99853 * 0.23398 * 10 9 8 13 13 C 1.46505 * 119.99950 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46950 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.68221 * 300.74678 * 14 13 12 16 16 C 1.53298 * 109.68054 * 180.23302 * 14 13 12 17 17 O 1.42954 * 109.22590 * 187.97625 * 16 14 13 18 18 C 1.42963 * 114.16879 * 62.57870 * 17 16 14 19 19 C 1.53296 * 109.21874 * 297.41943 * 18 17 16 20 20 N 1.47145 * 109.68555 * 61.26881 * 14 13 12 21 21 C 1.36945 * 120.98171 * 350.23289 * 20 14 13 22 22 H 1.07997 * 119.99388 * 31.04354 * 21 20 14 23 23 C 1.38809 * 119.99910 * 211.04740 * 21 20 14 24 24 N 1.31611 * 120.00129 * 10.79994 * 23 21 20 25 25 Si 1.86801 * 119.99806 * 190.80048 * 23 21 20 26 26 H 1.48502 * 109.47069 * 60.00114 * 25 23 21 27 27 H 1.48497 * 109.47272 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47107 * 300.00129 * 25 23 21 29 29 H 1.08999 * 109.47503 * 89.97952 * 1 2 3 30 30 H 1.09003 * 109.47397 * 209.98105 * 1 2 3 31 31 H 1.09002 * 109.47323 * 329.98103 * 1 2 3 32 32 H 1.08996 * 109.47417 * 180.02562 * 5 4 3 33 33 H 1.08996 * 109.47140 * 300.00331 * 6 5 4 34 34 H 1.09001 * 109.46832 * 60.00299 * 6 5 4 35 35 H 1.08994 * 109.47194 * 180.02562 * 6 5 4 36 36 H 1.09005 * 109.46782 * 59.99605 * 7 5 4 37 37 H 1.08994 * 109.47537 * 179.97438 * 7 5 4 38 38 H 1.09000 * 109.46762 * 299.99820 * 7 5 4 39 39 H 0.96999 * 120.00168 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.47107 * 300.00234 * 13 12 10 41 41 H 1.09003 * 109.46707 * 60.00240 * 13 12 10 42 42 H 1.08998 * 109.51073 * 307.90280 * 16 14 13 43 43 H 1.09004 * 109.51183 * 68.00022 * 16 14 13 44 44 H 1.08999 * 109.51164 * 57.34469 * 18 17 16 45 45 H 1.09001 * 109.51130 * 177.50121 * 18 17 16 46 46 H 1.09005 * 109.67948 * 172.02510 * 19 18 17 47 47 H 1.08991 * 109.68583 * 292.57470 * 19 18 17 48 48 H 0.97006 * 120.00182 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5451 0.6899 -0.0006 5 6 4.7439 1.6030 -0.0013 6 6 4.7135 2.4856 1.2482 7 6 4.7117 2.4862 -1.2503 8 8 3.5889 -0.6461 -0.0062 9 6 2.3136 -1.0992 -0.0006 10 6 1.8826 -2.5017 0.0000 11 8 0.6965 -2.7737 0.0011 12 7 2.8003 -3.4887 -0.0007 13 6 2.3700 -4.8891 -0.0007 14 6 3.5990 -5.8003 -0.0009 15 1 4.2063 -5.5974 -0.8830 16 6 3.1541 -7.2673 -0.0067 17 8 4.2963 -8.1063 0.1804 18 6 4.9596 -7.9212 1.4332 19 6 5.4971 -6.4877 1.5127 20 7 4.3940 -5.5605 1.2139 21 6 4.1153 -4.5060 2.0420 22 1 3.1003 -4.1505 2.1405 23 6 5.1374 -3.8943 2.7547 24 7 6.3928 -4.1793 2.4807 25 14 4.7311 -2.6666 4.1027 26 1 3.9131 -3.3321 5.1483 27 1 5.9895 -2.1604 4.7071 28 1 3.9675 -1.5316 3.5247 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5141 32 1 5.6557 1.0058 -0.0021 33 1 3.8018 3.0829 1.2490 34 1 4.7366 1.8564 2.1380 35 1 5.5803 3.1464 1.2474 36 1 3.7999 3.0835 -1.2494 37 1 5.5785 3.1470 -1.2506 38 1 4.7334 1.8574 -2.1404 39 1 3.7457 -3.2719 -0.0012 40 1 1.7725 -5.0856 0.8896 41 1 1.7716 -5.0853 -0.8904 42 1 2.4427 -7.4351 0.8018 43 1 2.6823 -7.5008 -0.9612 44 1 4.2548 -8.0915 2.2470 45 1 5.7876 -8.6254 1.5143 46 1 5.8784 -6.2937 2.5153 47 1 6.2959 -6.3542 0.7834 48 1 7.1070 -3.7515 2.9785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051153159.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:40 Heat of formation + Delta-G solvation = -41.137192 kcal Electronic energy + Delta-G solvation = -30985.821132 eV Core-core repulsion = 26850.272077 eV Total energy + Delta-G solvation = -4135.549055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.25200 -39.33363 -38.32768 -35.90662 -35.56953 -34.89647 -33.64087 -31.70703 -30.84914 -30.44877 -27.92837 -27.36074 -27.18732 -25.55456 -23.96804 -23.49861 -22.07305 -21.31178 -20.46745 -20.13930 -19.70547 -17.90017 -16.75994 -16.64562 -16.09176 -15.97497 -15.79579 -15.07455 -14.67629 -14.55033 -14.41498 -14.35667 -13.90370 -13.81250 -13.57389 -13.28764 -13.09403 -13.04526 -12.89703 -12.67305 -12.36441 -12.21269 -11.96950 -11.83528 -11.61774 -11.46420 -11.22198 -11.10043 -10.91917 -10.83062 -10.78723 -10.62030 -10.47065 -10.31921 -10.10447 -9.83331 -9.68756 -9.05260 -8.82318 -8.64849 -8.32541 -6.78459 -5.95974 -3.45664 1.06860 2.55583 2.59676 3.25453 3.30628 3.34308 3.42883 3.59413 3.97117 4.29941 4.48724 4.68872 4.82714 4.85856 4.96102 5.07626 5.19624 5.23061 5.45722 5.49388 5.52166 5.58657 5.65089 5.67358 5.72256 5.77048 5.79271 5.81624 5.95478 5.96571 5.99968 6.05136 6.07172 6.10395 6.12912 6.15832 6.28776 6.46498 6.47692 6.67254 6.88576 7.02504 7.44755 7.63891 7.70066 7.82409 8.02294 8.23647 8.51818 9.00330 9.60659 10.19470 11.10488 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.004289 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.810549 B = 6527.502506 C = 7696.853907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.065 3.935 3 N -0.486 5.486 4 C 0.217 3.783 5 C -0.001 4.001 6 C -0.144 4.144 7 C -0.141 4.141 8 O -0.177 6.177 9 C -0.102 4.102 10 C 0.600 3.400 11 O -0.537 6.537 12 N -0.679 5.679 13 C 0.134 3.866 14 C 0.124 3.876 15 H 0.042 0.958 16 C 0.057 3.943 17 O -0.392 6.392 18 C 0.035 3.965 19 C 0.144 3.856 20 N -0.591 5.591 21 C -0.259 4.259 22 H 0.071 0.929 23 C 0.014 3.986 24 N -0.897 5.897 25 Si 0.894 3.106 26 H -0.282 1.282 27 H -0.288 1.288 28 H -0.282 1.282 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.420 0.580 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.047 0.953 43 H 0.084 0.916 44 H 0.041 0.959 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.029 0.971 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.366 7.218 -5.755 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.059 4.059 3 N -0.216 5.216 4 C 0.011 3.989 5 C -0.021 4.021 6 C -0.202 4.202 7 C -0.199 4.199 8 O -0.062 6.062 9 C -0.157 4.157 10 C 0.385 3.615 11 O -0.418 6.418 12 N -0.329 5.329 13 C 0.011 3.989 14 C 0.017 3.983 15 H 0.060 0.940 16 C -0.022 4.022 17 O -0.310 6.310 18 C -0.043 4.043 19 C 0.019 3.981 20 N -0.317 5.317 21 C -0.388 4.388 22 H 0.089 0.911 23 C -0.186 4.186 24 N -0.541 5.541 25 Si 0.724 3.276 26 H -0.208 1.208 27 H -0.213 1.213 28 H -0.209 1.209 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.259 0.741 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.059 0.941 45 H 0.098 0.902 46 H 0.111 0.889 47 H 0.048 0.952 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.059 7.512 -5.805 10.325 hybrid contribution 0.644 0.223 1.111 1.303 sum -3.416 7.735 -4.694 9.671 Atomic orbital electron populations 1.20312 0.85543 1.04078 1.03266 1.21971 0.98155 0.86498 0.99270 1.70200 1.00264 1.31063 1.20067 1.26432 0.95502 0.79463 0.97467 1.19741 0.90859 0.93189 0.98297 1.21841 1.03207 0.99355 0.95758 1.21826 1.03251 0.99294 0.95508 1.84537 1.29764 1.23356 1.68563 1.23050 0.81190 0.96554 1.14917 1.16312 0.85813 0.81439 0.77954 1.90787 1.15866 1.82019 1.53089 1.45958 1.10813 1.05579 1.70528 1.21282 0.96610 0.79640 1.01415 1.21438 0.92110 0.92877 0.91877 0.94037 1.22849 0.87960 0.90869 1.00561 1.87803 1.43639 1.61226 1.38369 1.23358 0.95958 1.00084 0.84915 1.21420 0.89471 0.84895 1.02328 1.44080 1.35786 1.29908 1.21923 1.19132 0.92630 1.07656 1.19361 0.91145 1.25102 0.95235 0.97985 1.00271 1.69960 0.97995 1.44801 1.41296 0.86493 0.77232 0.81516 0.82389 1.20804 1.21336 1.20852 0.90427 0.88693 0.90923 0.87980 0.91199 0.92057 0.90880 0.91217 0.90937 0.92194 0.74138 0.90946 0.91744 0.93420 0.89827 0.94075 0.90190 0.88928 0.95243 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 9.87 36.00 0.36 -0.72 16 2 C 0.07 1.14 7.16 -82.47 -0.59 0.55 16 3 N -0.49 -8.12 11.26 -7.07 -0.08 -8.20 16 4 C 0.22 3.51 6.82 -12.80 -0.09 3.42 16 5 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 6 C -0.14 -1.56 9.18 37.16 0.34 -1.21 16 7 C -0.14 -1.34 9.18 37.16 0.34 -1.00 16 8 O -0.18 -3.31 10.57 4.43 0.05 -3.26 16 9 C -0.10 -1.93 7.18 -36.84 -0.26 -2.19 16 10 C 0.60 11.76 7.79 -12.83 -0.10 11.66 16 11 O -0.54 -10.89 14.79 5.21 0.08 -10.81 16 12 N -0.68 -13.22 3.79 -61.60 -0.23 -13.45 16 13 C 0.13 2.44 4.44 -4.04 -0.02 2.42 16 14 C 0.12 2.39 3.20 -67.43 -0.22 2.17 16 15 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 16 C 0.06 0.98 6.29 37.31 0.23 1.21 16 17 O -0.39 -7.48 10.74 -35.23 -0.38 -7.86 16 18 C 0.03 0.66 6.99 37.31 0.26 0.92 16 19 C 0.14 3.24 5.38 -3.53 -0.02 3.22 16 20 N -0.59 -13.50 3.03 -164.30 -0.50 -13.99 16 21 C -0.26 -6.41 7.11 -15.06 -0.11 -6.51 16 22 H 0.07 1.79 5.81 -52.49 -0.30 1.48 16 23 C 0.01 0.36 5.06 -17.44 -0.09 0.28 16 24 N -0.90 -24.05 11.13 55.49 0.62 -23.43 16 25 Si 0.89 21.16 29.57 -169.99 -5.03 16.13 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.46 6.47 -51.93 -0.34 1.12 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.42 8.80 7.17 -40.82 -0.29 8.51 16 40 H 0.07 1.40 7.53 -51.93 -0.39 1.01 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 46 H 0.09 2.29 6.32 -51.93 -0.33 1.96 16 47 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -29.43 387.10 -7.46 -36.89 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -7.55 Total: 8.27 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: -0.27 Total: 13.88 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.19 Total: -59.07 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.25 Total: -21.93 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.43 -7.46 -36.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051153159.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.243 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds