Wall clock time and date at job start Tue Mar 31 2020 20:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33694 * 126.27350 * 2 1 4 4 C 1.30611 * 108.99250 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.42080 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47054 * 60.02627 * 5 4 3 7 7 C 1.53001 * 109.47518 * 300.02819 * 5 4 3 8 8 O 1.33666 * 109.15751 * 0.23933 * 4 3 2 9 9 C 1.35341 * 107.68125 * 359.61385 * 8 4 3 10 10 C 1.46729 * 126.64182 * 180.18032 * 9 8 4 11 11 O 1.21682 * 119.99941 * 180.23692 * 10 9 8 12 12 N 1.34770 * 119.99853 * 0.23398 * 10 9 8 13 13 C 1.46505 * 119.99950 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46950 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.68221 * 300.74678 * 14 13 12 16 16 C 1.53298 * 109.68054 * 180.23302 * 14 13 12 17 17 O 1.42954 * 109.22590 * 187.97625 * 16 14 13 18 18 C 1.42963 * 114.16879 * 62.57870 * 17 16 14 19 19 C 1.53296 * 109.21874 * 297.41943 * 18 17 16 20 20 N 1.47145 * 109.68555 * 61.26881 * 14 13 12 21 21 C 1.36945 * 120.98171 * 350.23289 * 20 14 13 22 22 H 1.07997 * 119.99388 * 31.04354 * 21 20 14 23 23 C 1.38809 * 119.99910 * 211.04740 * 21 20 14 24 24 N 1.31611 * 120.00129 * 10.79994 * 23 21 20 25 25 Si 1.86801 * 119.99806 * 190.80048 * 23 21 20 26 26 H 1.48502 * 109.47069 * 60.00114 * 25 23 21 27 27 H 1.48497 * 109.47272 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47107 * 300.00129 * 25 23 21 29 29 H 1.08999 * 109.47503 * 89.97952 * 1 2 3 30 30 H 1.09003 * 109.47397 * 209.98105 * 1 2 3 31 31 H 1.09002 * 109.47323 * 329.98103 * 1 2 3 32 32 H 1.08996 * 109.47417 * 180.02562 * 5 4 3 33 33 H 1.08996 * 109.47140 * 300.00331 * 6 5 4 34 34 H 1.09001 * 109.46832 * 60.00299 * 6 5 4 35 35 H 1.08994 * 109.47194 * 180.02562 * 6 5 4 36 36 H 1.09005 * 109.46782 * 59.99605 * 7 5 4 37 37 H 1.08994 * 109.47537 * 179.97438 * 7 5 4 38 38 H 1.09000 * 109.46762 * 299.99820 * 7 5 4 39 39 H 0.96999 * 120.00168 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.47107 * 300.00234 * 13 12 10 41 41 H 1.09003 * 109.46707 * 60.00240 * 13 12 10 42 42 H 1.08998 * 109.51073 * 307.90280 * 16 14 13 43 43 H 1.09004 * 109.51183 * 68.00022 * 16 14 13 44 44 H 1.08999 * 109.51164 * 57.34469 * 18 17 16 45 45 H 1.09001 * 109.51130 * 177.50121 * 18 17 16 46 46 H 1.09005 * 109.67948 * 172.02510 * 19 18 17 47 47 H 1.08991 * 109.68583 * 292.57470 * 19 18 17 48 48 H 0.97006 * 120.00182 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5451 0.6899 -0.0006 5 6 4.7439 1.6030 -0.0013 6 6 4.7135 2.4856 1.2482 7 6 4.7117 2.4862 -1.2503 8 8 3.5889 -0.6461 -0.0062 9 6 2.3136 -1.0992 -0.0006 10 6 1.8826 -2.5017 0.0000 11 8 0.6965 -2.7737 0.0011 12 7 2.8003 -3.4887 -0.0007 13 6 2.3700 -4.8891 -0.0007 14 6 3.5990 -5.8003 -0.0009 15 1 4.2063 -5.5974 -0.8830 16 6 3.1541 -7.2673 -0.0067 17 8 4.2963 -8.1063 0.1804 18 6 4.9596 -7.9212 1.4332 19 6 5.4971 -6.4877 1.5127 20 7 4.3940 -5.5605 1.2139 21 6 4.1153 -4.5060 2.0420 22 1 3.1003 -4.1505 2.1405 23 6 5.1374 -3.8943 2.7547 24 7 6.3928 -4.1793 2.4807 25 14 4.7311 -2.6666 4.1027 26 1 3.9131 -3.3321 5.1483 27 1 5.9895 -2.1604 4.7071 28 1 3.9675 -1.5316 3.5247 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5141 32 1 5.6557 1.0058 -0.0021 33 1 3.8018 3.0829 1.2490 34 1 4.7366 1.8564 2.1380 35 1 5.5803 3.1464 1.2474 36 1 3.7999 3.0835 -1.2494 37 1 5.5785 3.1470 -1.2506 38 1 4.7334 1.8574 -2.1404 39 1 3.7457 -3.2719 -0.0012 40 1 1.7725 -5.0856 0.8896 41 1 1.7716 -5.0853 -0.8904 42 1 2.4427 -7.4351 0.8018 43 1 2.6823 -7.5008 -0.9612 44 1 4.2548 -8.0915 2.2470 45 1 5.7876 -8.6254 1.5143 46 1 5.8784 -6.2937 2.5153 47 1 6.2959 -6.3542 0.7834 48 1 7.1070 -3.7515 2.9785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051153159.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:39 Heat of formation + Delta-G solvation = -61.901401 kcal Electronic energy + Delta-G solvation = -30986.721536 eV Core-core repulsion = 26850.272077 eV Total energy + Delta-G solvation = -4136.449459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.58708 -40.87708 -39.88280 -37.12760 -36.93136 -36.23882 -35.34680 -33.39181 -32.32776 -31.92888 -29.33088 -28.87018 -28.16859 -26.99101 -25.32012 -25.15159 -23.58436 -22.71869 -21.78354 -21.42840 -21.34446 -19.45089 -18.36046 -18.12171 -17.62057 -17.37497 -17.26156 -16.57339 -16.29764 -16.15747 -15.75319 -15.53279 -15.41720 -15.28459 -15.10888 -14.75941 -14.39388 -14.32773 -14.13622 -14.11690 -13.60553 -13.35684 -13.16302 -13.12302 -12.97446 -12.78057 -12.76825 -12.56468 -12.37668 -12.24395 -12.22072 -12.03552 -12.00586 -11.89235 -11.85700 -11.37722 -11.23820 -10.70860 -10.60363 -10.22026 -9.78360 -8.66032 -7.92772 -5.42673 -0.31010 1.24094 1.30960 1.33403 1.36734 1.40763 1.94825 2.16444 2.38620 2.74673 3.02421 3.23406 3.40124 3.58385 3.60249 3.87646 3.95961 3.97464 4.06656 4.20115 4.30111 4.39690 4.40959 4.46591 4.56172 4.61368 4.64854 4.66088 4.71664 4.72339 4.73333 4.79399 4.84128 4.88791 4.98934 5.01547 5.08349 5.16944 5.23799 5.27070 5.32258 5.38535 5.60624 5.63313 6.27003 6.28158 6.35896 6.52490 6.96596 7.06537 7.71902 8.27534 9.11477 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.004289 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.810549 B = 6527.502506 C = 7696.853907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.071 3.929 3 N -0.494 5.494 4 C 0.222 3.778 5 C -0.008 4.008 6 C -0.140 4.140 7 C -0.133 4.133 8 O -0.197 6.197 9 C -0.140 4.140 10 C 0.601 3.399 11 O -0.548 6.548 12 N -0.684 5.684 13 C 0.139 3.861 14 C 0.124 3.876 15 H 0.036 0.964 16 C 0.059 3.941 17 O -0.397 6.397 18 C 0.047 3.953 19 C 0.149 3.851 20 N -0.605 5.605 21 C -0.242 4.242 22 H 0.065 0.935 23 C -0.027 4.027 24 N -0.922 5.922 25 Si 0.938 3.062 26 H -0.283 1.283 27 H -0.288 1.288 28 H -0.292 1.292 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.039 0.961 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.055 0.945 39 H 0.411 0.589 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.052 0.948 43 H 0.121 0.879 44 H 0.045 0.955 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.006 0.994 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.065 7.759 -6.584 10.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.053 4.053 3 N -0.224 5.224 4 C 0.016 3.984 5 C -0.027 4.027 6 C -0.197 4.197 7 C -0.191 4.191 8 O -0.084 6.084 9 C -0.195 4.195 10 C 0.386 3.614 11 O -0.430 6.430 12 N -0.332 5.332 13 C 0.016 3.984 14 C 0.018 3.982 15 H 0.054 0.946 16 C -0.020 4.020 17 O -0.315 6.315 18 C -0.031 4.031 19 C 0.024 3.976 20 N -0.331 5.331 21 C -0.372 4.372 22 H 0.082 0.918 23 C -0.224 4.224 24 N -0.567 5.567 25 Si 0.768 3.232 26 H -0.209 1.209 27 H -0.213 1.213 28 H -0.219 1.219 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.248 0.752 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.070 0.930 43 H 0.138 0.862 44 H 0.063 0.937 45 H 0.123 0.877 46 H 0.084 0.916 47 H 0.024 0.976 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.790 8.036 -6.642 11.474 hybrid contribution 0.843 0.125 1.315 1.567 sum -3.947 8.161 -5.327 10.515 Atomic orbital electron populations 1.20396 0.83584 1.04421 1.04492 1.22512 0.99462 0.86186 0.97178 1.70265 1.00462 1.30665 1.20996 1.27535 0.96761 0.79036 0.95022 1.20143 0.89278 0.93120 1.00192 1.21850 1.04687 0.99110 0.94075 1.21814 1.04501 0.98994 0.93778 1.84526 1.29967 1.24649 1.69283 1.23021 0.81731 0.96691 1.18013 1.16392 0.85643 0.81814 0.77502 1.90762 1.16061 1.82424 1.53785 1.45986 1.10277 1.06186 1.70787 1.21310 0.96112 0.78866 1.02109 1.21591 0.91860 0.94816 0.89950 0.94610 1.22980 0.87458 0.88755 1.02761 1.87807 1.44179 1.61355 1.38172 1.23210 0.96756 0.97894 0.85226 1.21252 0.89120 0.87247 1.00015 1.44285 1.36078 1.29638 1.23126 1.19159 0.92062 1.07290 1.18727 0.91762 1.25523 0.95348 0.99527 1.02018 1.70063 0.98348 1.45998 1.42286 0.85805 0.76632 0.79910 0.80816 1.20942 1.21333 1.21885 0.88622 0.89796 0.88995 0.87503 0.91350 0.94131 0.87617 0.91562 0.87881 0.92611 0.75186 0.92151 0.88971 0.92957 0.86154 0.93712 0.87725 0.91577 0.97573 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.98 9.87 71.24 0.70 -1.27 16 2 C 0.07 2.44 7.16 41.83 0.30 2.74 16 3 N -0.49 -16.18 11.26 -291.07 -3.28 -19.46 16 4 C 0.22 7.11 6.82 88.29 0.60 7.71 16 5 C -0.01 -0.18 3.39 -11.54 -0.04 -0.22 16 6 C -0.14 -2.80 9.18 71.98 0.66 -2.14 16 7 C -0.13 -2.25 9.18 71.98 0.66 -1.59 16 8 O -0.20 -7.53 10.57 -7.08 -0.07 -7.61 16 9 C -0.14 -5.37 7.18 24.05 0.17 -5.19 16 10 C 0.60 23.72 7.79 86.46 0.67 24.40 16 11 O -0.55 -22.14 14.79 -4.29 -0.06 -22.21 16 12 N -0.68 -26.83 3.79 -467.03 -1.77 -28.60 16 13 C 0.14 4.94 4.44 86.38 0.38 5.32 16 14 C 0.12 4.66 3.20 44.97 0.14 4.80 16 15 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 16 C 0.06 1.88 6.29 72.08 0.45 2.34 16 17 O -0.40 -14.23 10.74 -148.98 -1.60 -15.83 16 18 C 0.05 1.71 6.99 72.08 0.50 2.22 16 19 C 0.15 6.75 5.38 86.35 0.46 7.22 16 20 N -0.61 -27.72 3.03 -673.72 -2.04 -29.76 16 21 C -0.24 -12.16 7.11 84.03 0.60 -11.56 16 22 H 0.06 3.30 5.81 -2.91 -0.02 3.29 16 23 C -0.03 -1.42 5.06 84.86 0.43 -0.99 16 24 N -0.92 -50.66 11.13 21.65 0.24 -50.42 16 25 Si 0.94 44.39 29.57 68.60 2.03 46.42 16 26 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 27 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 28 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 29 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.08 2.52 6.47 -2.39 -0.02 2.50 16 31 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.41 17.66 7.17 -92.71 -0.66 16.99 16 40 H 0.06 2.30 7.53 -2.39 -0.02 2.28 16 41 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 46 H 0.07 3.34 6.32 -2.38 -0.02 3.33 16 47 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.25 13.60 8.31 -92.70 -0.77 12.83 16 Total: -1.00 -64.19 387.10 0.46 -63.73 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 0.31 Total: 29.97 kcal Atomic # 6 Polarization: 27.07 SS G_CDS: 6.71 Total: 33.78 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -6.85 Total: -128.25 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -1.74 Total: -45.65 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -64.19 0.46 -63.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051153159.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.833 kcal (2) G-P(sol) polarization free energy of solvation -64.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds