Wall clock time and date at job start Tue Mar 31 2020 20:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33693 * 126.27404 * 2 1 4 4 C 1.30608 * 108.99458 * 180.29395 * 3 2 1 5 5 C 1.50701 * 125.42130 * 179.69402 * 4 3 2 6 6 C 1.52997 * 109.47181 * 300.03679 * 5 4 3 7 7 C 1.52997 * 109.47271 * 60.04326 * 5 4 3 8 8 O 1.33665 * 109.15763 * 359.72928 * 4 3 2 9 9 C 1.35346 * 107.68038 * 0.02562 * 8 4 3 10 10 C 1.46728 * 126.64311 * 180.02562 * 9 8 4 11 11 O 1.21677 * 119.99786 * 180.02562 * 10 9 8 12 12 N 1.34778 * 119.99587 * 0.29592 * 10 9 8 13 13 C 1.46504 * 119.99544 * 179.72363 * 12 10 9 14 14 C 1.53005 * 109.46738 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.67529 * 59.85914 * 14 13 12 16 16 C 1.53297 * 109.67700 * 180.41220 * 14 13 12 17 17 O 1.42960 * 109.22130 * 172.02705 * 16 14 13 18 18 C 1.42964 * 114.16656 * 297.42306 * 17 16 14 19 19 C 1.53290 * 109.22512 * 62.57763 * 18 17 16 20 20 N 1.47145 * 109.68406 * 299.34184 * 14 13 12 21 21 C 1.36938 * 120.98235 * 9.71741 * 20 14 13 22 22 H 1.08000 * 120.00401 * 328.31865 * 21 20 14 23 23 C 1.38812 * 119.99962 * 148.31624 * 21 20 14 24 24 N 1.31622 * 119.99780 * 349.27998 * 23 21 20 25 25 Si 1.86802 * 119.99904 * 169.28852 * 23 21 20 26 26 H 1.48494 * 109.47329 * 90.00215 * 25 23 21 27 27 H 1.48508 * 109.46543 * 209.99658 * 25 23 21 28 28 H 1.48501 * 109.47124 * 329.99202 * 25 23 21 29 29 H 1.08998 * 109.47012 * 270.16377 * 1 2 3 30 30 H 1.09001 * 109.47096 * 30.16632 * 1 2 3 31 31 H 1.09004 * 109.47194 * 150.16317 * 1 2 3 32 32 H 1.09009 * 109.47120 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47052 * 60.00564 * 6 5 4 34 34 H 1.09000 * 109.46988 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.47549 * 300.00439 * 6 5 4 36 36 H 1.09003 * 109.47297 * 59.99584 * 7 5 4 37 37 H 1.09000 * 109.47373 * 179.97438 * 7 5 4 38 38 H 1.09004 * 109.47015 * 299.99468 * 7 5 4 39 39 H 0.96995 * 120.00338 * 359.73565 * 12 10 9 40 40 H 1.09003 * 109.47028 * 300.00324 * 13 12 10 41 41 H 1.09000 * 109.47103 * 60.00490 * 13 12 10 42 42 H 1.08994 * 109.51536 * 291.95221 * 16 14 13 43 43 H 1.09000 * 109.51249 * 52.10163 * 16 14 13 44 44 H 1.09004 * 109.50964 * 302.65449 * 18 17 16 45 45 H 1.09003 * 109.55665 * 182.52843 * 18 17 16 46 46 H 1.09002 * 109.68571 * 187.97901 * 19 18 17 47 47 H 1.09001 * 109.71250 * 67.44488 * 19 18 17 48 48 H 0.96999 * 119.99426 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 -0.0063 5 6 4.7439 1.6031 -0.0151 6 6 4.7049 2.4840 -1.2654 7 6 4.7203 2.4877 1.2330 8 8 3.5890 -0.6460 -0.0046 9 6 2.3136 -1.0991 0.0026 10 6 1.8826 -2.5017 0.0073 11 8 0.6966 -2.7736 0.0132 12 7 2.8004 -3.4886 0.0107 13 6 2.3701 -4.8890 0.0216 14 6 3.5992 -5.8002 0.0239 15 1 4.2037 -5.5987 0.9083 16 6 3.1542 -7.2672 0.0249 17 8 4.2971 -8.1058 -0.1601 18 6 4.9648 -7.9178 -1.4102 19 6 5.5024 -6.4842 -1.4847 20 7 4.3979 -5.5582 -1.1880 21 6 4.1211 -4.5029 -2.0156 22 1 3.1048 -4.1544 -2.1249 23 6 5.1470 -3.8810 -2.7140 24 7 6.4011 -4.1589 -2.4272 25 14 4.7474 -2.6496 -4.0606 26 1 4.6556 -1.2881 -3.4751 27 1 5.8190 -2.6752 -5.0884 28 1 3.4502 -3.0068 -4.6890 29 1 -0.3633 0.0029 1.0276 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3634 -0.8915 -0.5113 32 1 5.6558 1.0058 -0.0195 33 1 3.7932 3.0814 -1.2607 34 1 5.5717 3.1448 -1.2715 35 1 4.7218 1.8537 -2.1546 36 1 4.7481 1.8601 2.1238 37 1 5.5876 3.1479 1.2269 38 1 3.8086 3.0851 1.2377 39 1 3.7458 -3.2718 0.0061 40 1 1.7753 -5.0794 0.9149 41 1 1.7691 -5.0913 -0.8650 42 1 2.6799 -7.5031 0.9775 43 1 2.4456 -7.4332 -0.7864 44 1 4.2627 -8.0862 -2.2268 45 1 5.7930 -8.6218 -1.4910 46 1 5.8872 -6.2878 -2.4854 47 1 6.2991 -6.3518 -0.7526 48 1 7.1179 -3.7246 -2.9156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051153162.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:44 Heat of formation + Delta-G solvation = -41.187794 kcal Electronic energy + Delta-G solvation = -31001.650653 eV Core-core repulsion = 26866.099404 eV Total energy + Delta-G solvation = -4135.551249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.25091 -39.33283 -38.32724 -35.90215 -35.57099 -34.89505 -33.63256 -31.70715 -30.84969 -30.45419 -27.92650 -27.35564 -27.19050 -25.54997 -23.96368 -23.50179 -22.07334 -21.31191 -20.46241 -20.13367 -19.70931 -17.89750 -16.75659 -16.64679 -16.08684 -15.97175 -15.79541 -15.07440 -14.67784 -14.54508 -14.41445 -14.35125 -13.90365 -13.81098 -13.57069 -13.28445 -13.09312 -13.04960 -12.89475 -12.67866 -12.36048 -12.21026 -11.97138 -11.83042 -11.61384 -11.46078 -11.21625 -11.11140 -10.92836 -10.82213 -10.78503 -10.61795 -10.46779 -10.31669 -10.11629 -9.83098 -9.68297 -9.05312 -8.82532 -8.65021 -8.32214 -6.77695 -5.96699 -3.46697 1.06932 2.55783 2.59890 3.23274 3.31269 3.35005 3.43482 3.59236 3.97351 4.29553 4.48615 4.69361 4.82974 4.86481 4.96267 5.07725 5.19697 5.22903 5.46144 5.49706 5.52477 5.58956 5.65561 5.67460 5.72587 5.77369 5.79459 5.81681 5.95468 5.96629 6.00106 6.05743 6.07308 6.10349 6.13126 6.15843 6.28459 6.46481 6.47675 6.67450 6.88942 7.01793 7.44033 7.64073 7.70324 7.82157 8.02928 8.23560 8.52392 8.99922 9.60105 10.19370 11.09746 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011891 B = 0.004303 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.181872 B = 6506.223032 C = 7683.181418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.066 3.934 3 N -0.486 5.486 4 C 0.218 3.782 5 C -0.001 4.001 6 C -0.144 4.144 7 C -0.141 4.141 8 O -0.176 6.176 9 C -0.103 4.103 10 C 0.600 3.400 11 O -0.537 6.537 12 N -0.679 5.679 13 C 0.135 3.865 14 C 0.124 3.876 15 H 0.042 0.958 16 C 0.057 3.943 17 O -0.392 6.392 18 C 0.035 3.965 19 C 0.145 3.855 20 N -0.591 5.591 21 C -0.258 4.258 22 H 0.071 0.929 23 C 0.014 3.986 24 N -0.896 5.896 25 Si 0.892 3.108 26 H -0.285 1.285 27 H -0.287 1.287 28 H -0.278 1.278 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.420 0.580 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.048 0.952 44 H 0.041 0.959 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.030 0.970 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.390 7.162 5.596 9.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.059 4.059 3 N -0.216 5.216 4 C 0.012 3.988 5 C -0.021 4.021 6 C -0.202 4.202 7 C -0.199 4.199 8 O -0.062 6.062 9 C -0.158 4.158 10 C 0.384 3.616 11 O -0.418 6.418 12 N -0.329 5.329 13 C 0.011 3.989 14 C 0.017 3.983 15 H 0.060 0.940 16 C -0.022 4.022 17 O -0.310 6.310 18 C -0.043 4.043 19 C 0.019 3.981 20 N -0.317 5.317 21 C -0.388 4.388 22 H 0.089 0.911 23 C -0.186 4.186 24 N -0.539 5.539 25 Si 0.722 3.278 26 H -0.212 1.212 27 H -0.213 1.213 28 H -0.203 1.203 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.259 0.741 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.098 0.902 46 H 0.110 0.890 47 H 0.048 0.952 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.088 7.451 5.651 10.206 hybrid contribution 0.669 0.232 -1.107 1.314 sum -3.420 7.684 4.543 9.559 Atomic orbital electron populations 1.20313 0.85534 1.04073 1.03271 1.21975 0.98155 0.86496 0.99247 1.70202 1.00255 1.31061 1.20098 1.26432 0.95497 0.79469 0.97409 1.19740 0.90874 0.93190 0.98289 1.21840 1.03195 0.99360 0.95760 1.21825 1.03239 0.99285 0.95519 1.84545 1.29746 1.23351 1.68540 1.23061 0.81200 0.96561 1.14993 1.16316 0.85817 0.81439 0.77994 1.90786 1.15867 1.82020 1.53099 1.45979 1.10853 1.05561 1.70475 1.21279 0.96602 0.79671 1.01383 1.21445 0.92086 0.92868 0.91919 0.94022 1.22852 0.87937 0.90876 1.00566 1.87804 1.43474 1.61162 1.38589 1.23351 0.95912 1.00051 0.84993 1.21405 0.89488 0.84943 1.02247 1.44074 1.35559 1.29875 1.22192 1.19160 0.92496 1.07449 1.19657 0.91148 1.25121 0.95289 0.97919 1.00242 1.69975 0.97956 1.44547 1.41462 0.86445 0.77741 0.81600 0.82053 1.21199 1.21271 1.20348 0.90427 0.90917 0.88696 0.87997 0.91198 0.90890 0.92058 0.92194 0.90942 0.91211 0.74071 0.91752 0.90970 0.89827 0.93409 0.94076 0.90193 0.89048 0.95215 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 9.87 36.01 0.36 -0.71 16 2 C 0.07 1.14 7.16 -82.46 -0.59 0.55 16 3 N -0.49 -8.12 11.26 -7.07 -0.08 -8.20 16 4 C 0.22 3.53 6.82 -12.80 -0.09 3.45 16 5 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 6 C -0.14 -1.58 9.18 37.16 0.34 -1.24 16 7 C -0.14 -1.35 9.18 37.16 0.34 -1.01 16 8 O -0.18 -3.31 10.57 4.41 0.05 -3.27 16 9 C -0.10 -1.94 7.18 -36.84 -0.26 -2.21 16 10 C 0.60 11.73 7.79 -12.83 -0.10 11.63 16 11 O -0.54 -10.88 14.79 5.21 0.08 -10.80 16 12 N -0.68 -13.22 3.78 -61.60 -0.23 -13.46 16 13 C 0.13 2.44 4.45 -4.04 -0.02 2.42 16 14 C 0.12 2.38 3.21 -67.42 -0.22 2.17 16 15 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 16 C 0.06 0.98 6.29 37.31 0.23 1.21 16 17 O -0.39 -7.48 10.74 -35.23 -0.38 -7.86 16 18 C 0.03 0.66 6.98 37.31 0.26 0.92 16 19 C 0.14 3.24 5.37 -3.54 -0.02 3.22 16 20 N -0.59 -13.49 3.03 -164.30 -0.50 -13.98 16 21 C -0.26 -6.40 7.04 -15.06 -0.11 -6.51 16 22 H 0.07 1.79 5.84 -52.49 -0.31 1.48 16 23 C 0.01 0.37 5.06 -17.43 -0.09 0.28 16 24 N -0.90 -24.00 11.17 55.49 0.62 -23.38 16 25 Si 0.89 21.11 29.57 -169.99 -5.03 16.08 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 1.45 6.47 -51.93 -0.34 1.11 16 32 H 0.10 1.18 8.14 -51.92 -0.42 0.76 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.42 8.84 7.11 -40.82 -0.29 8.55 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.40 7.56 -51.93 -0.39 1.01 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.09 2.26 6.37 -51.93 -0.33 1.92 16 47 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 387.13 15.07 5.83 5.83 Total: -1.00 -29.34 387.13 -7.46 -36.80 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -7.56 Total: 8.37 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: -0.27 Total: 13.86 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.19 Total: -59.02 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.25 Total: -21.92 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.34 -7.46 -36.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051153162.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.385 kcal (2) G-P(sol) polarization free energy of solvation -29.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds