Wall clock time and date at job start Tue Mar 31 2020 20:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33693 * 126.27404 * 2 1 4 4 C 1.30608 * 108.99458 * 180.29395 * 3 2 1 5 5 C 1.50701 * 125.42130 * 179.69402 * 4 3 2 6 6 C 1.52997 * 109.47181 * 300.03679 * 5 4 3 7 7 C 1.52997 * 109.47271 * 60.04326 * 5 4 3 8 8 O 1.33665 * 109.15763 * 359.72928 * 4 3 2 9 9 C 1.35346 * 107.68038 * 0.02562 * 8 4 3 10 10 C 1.46728 * 126.64311 * 180.02562 * 9 8 4 11 11 O 1.21677 * 119.99786 * 180.02562 * 10 9 8 12 12 N 1.34778 * 119.99587 * 0.29592 * 10 9 8 13 13 C 1.46504 * 119.99544 * 179.72363 * 12 10 9 14 14 C 1.53005 * 109.46738 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.67529 * 59.85914 * 14 13 12 16 16 C 1.53297 * 109.67700 * 180.41220 * 14 13 12 17 17 O 1.42960 * 109.22130 * 172.02705 * 16 14 13 18 18 C 1.42964 * 114.16656 * 297.42306 * 17 16 14 19 19 C 1.53290 * 109.22512 * 62.57763 * 18 17 16 20 20 N 1.47145 * 109.68406 * 299.34184 * 14 13 12 21 21 C 1.36938 * 120.98235 * 9.71741 * 20 14 13 22 22 H 1.08000 * 120.00401 * 328.31865 * 21 20 14 23 23 C 1.38812 * 119.99962 * 148.31624 * 21 20 14 24 24 N 1.31622 * 119.99780 * 349.27998 * 23 21 20 25 25 Si 1.86802 * 119.99904 * 169.28852 * 23 21 20 26 26 H 1.48494 * 109.47329 * 90.00215 * 25 23 21 27 27 H 1.48508 * 109.46543 * 209.99658 * 25 23 21 28 28 H 1.48501 * 109.47124 * 329.99202 * 25 23 21 29 29 H 1.08998 * 109.47012 * 270.16377 * 1 2 3 30 30 H 1.09001 * 109.47096 * 30.16632 * 1 2 3 31 31 H 1.09004 * 109.47194 * 150.16317 * 1 2 3 32 32 H 1.09009 * 109.47120 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47052 * 60.00564 * 6 5 4 34 34 H 1.09000 * 109.46988 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.47549 * 300.00439 * 6 5 4 36 36 H 1.09003 * 109.47297 * 59.99584 * 7 5 4 37 37 H 1.09000 * 109.47373 * 179.97438 * 7 5 4 38 38 H 1.09004 * 109.47015 * 299.99468 * 7 5 4 39 39 H 0.96995 * 120.00338 * 359.73565 * 12 10 9 40 40 H 1.09003 * 109.47028 * 300.00324 * 13 12 10 41 41 H 1.09000 * 109.47103 * 60.00490 * 13 12 10 42 42 H 1.08994 * 109.51536 * 291.95221 * 16 14 13 43 43 H 1.09000 * 109.51249 * 52.10163 * 16 14 13 44 44 H 1.09004 * 109.50964 * 302.65449 * 18 17 16 45 45 H 1.09003 * 109.55665 * 182.52843 * 18 17 16 46 46 H 1.09002 * 109.68571 * 187.97901 * 19 18 17 47 47 H 1.09001 * 109.71250 * 67.44488 * 19 18 17 48 48 H 0.96999 * 119.99426 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 -0.0063 5 6 4.7439 1.6031 -0.0151 6 6 4.7049 2.4840 -1.2654 7 6 4.7203 2.4877 1.2330 8 8 3.5890 -0.6460 -0.0046 9 6 2.3136 -1.0991 0.0026 10 6 1.8826 -2.5017 0.0073 11 8 0.6966 -2.7736 0.0132 12 7 2.8004 -3.4886 0.0107 13 6 2.3701 -4.8890 0.0216 14 6 3.5992 -5.8002 0.0239 15 1 4.2037 -5.5987 0.9083 16 6 3.1542 -7.2672 0.0249 17 8 4.2971 -8.1058 -0.1601 18 6 4.9648 -7.9178 -1.4102 19 6 5.5024 -6.4842 -1.4847 20 7 4.3979 -5.5582 -1.1880 21 6 4.1211 -4.5029 -2.0156 22 1 3.1048 -4.1544 -2.1249 23 6 5.1470 -3.8810 -2.7140 24 7 6.4011 -4.1589 -2.4272 25 14 4.7474 -2.6496 -4.0606 26 1 4.6556 -1.2881 -3.4751 27 1 5.8190 -2.6752 -5.0884 28 1 3.4502 -3.0068 -4.6890 29 1 -0.3633 0.0029 1.0276 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3634 -0.8915 -0.5113 32 1 5.6558 1.0058 -0.0195 33 1 3.7932 3.0814 -1.2607 34 1 5.5717 3.1448 -1.2715 35 1 4.7218 1.8537 -2.1546 36 1 4.7481 1.8601 2.1238 37 1 5.5876 3.1479 1.2269 38 1 3.8086 3.0851 1.2377 39 1 3.7458 -3.2718 0.0061 40 1 1.7753 -5.0794 0.9149 41 1 1.7691 -5.0913 -0.8650 42 1 2.6799 -7.5031 0.9775 43 1 2.4456 -7.4332 -0.7864 44 1 4.2627 -8.0862 -2.2268 45 1 5.7930 -8.6218 -1.4910 46 1 5.8872 -6.2878 -2.4854 47 1 6.2991 -6.3518 -0.7526 48 1 7.1179 -3.7246 -2.9156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051153162.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:43 Heat of formation + Delta-G solvation = -61.851927 kcal Electronic energy + Delta-G solvation = -31002.546717 eV Core-core repulsion = 26866.099404 eV Total energy + Delta-G solvation = -4136.447313 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.58834 -40.87650 -39.88149 -37.12960 -36.93468 -36.23858 -35.33826 -33.39242 -32.33179 -31.92931 -29.32910 -28.87138 -28.17336 -26.98677 -25.32077 -25.15337 -23.58506 -22.71831 -21.77864 -21.42967 -21.34796 -19.44969 -18.35883 -18.12202 -17.61663 -17.37427 -17.26263 -16.57277 -16.29544 -16.15812 -15.75156 -15.53307 -15.41591 -15.28494 -15.11233 -14.76095 -14.39843 -14.32680 -14.13455 -14.11985 -13.60642 -13.35338 -13.15782 -13.12441 -12.98103 -12.79583 -12.76944 -12.55822 -12.37946 -12.24512 -12.21214 -12.03722 -12.00729 -11.89976 -11.85926 -11.37380 -11.23537 -10.71308 -10.60492 -10.21569 -9.78224 -8.65257 -7.93317 -5.43611 -0.31027 1.24048 1.30366 1.32267 1.36565 1.41799 1.95371 2.16243 2.38270 2.74533 3.02420 3.23125 3.40091 3.58423 3.60365 3.87310 3.96116 3.97064 4.06425 4.20113 4.30192 4.39658 4.41013 4.46545 4.56341 4.61265 4.64850 4.66430 4.71354 4.72383 4.72911 4.79507 4.83689 4.88742 4.98849 5.01243 5.08311 5.16765 5.23394 5.26746 5.32090 5.38748 5.60336 5.63230 6.27139 6.28420 6.35871 6.52770 6.97045 7.06348 7.71472 8.27539 9.10983 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011891 B = 0.004303 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.181872 B = 6506.223032 C = 7683.181418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.072 3.928 3 N -0.494 5.494 4 C 0.222 3.778 5 C -0.008 4.008 6 C -0.139 4.139 7 C -0.133 4.133 8 O -0.198 6.198 9 C -0.140 4.140 10 C 0.600 3.400 11 O -0.548 6.548 12 N -0.684 5.684 13 C 0.139 3.861 14 C 0.124 3.876 15 H 0.036 0.964 16 C 0.059 3.941 17 O -0.397 6.397 18 C 0.047 3.953 19 C 0.150 3.850 20 N -0.605 5.605 21 C -0.242 4.242 22 H 0.064 0.936 23 C -0.026 4.026 24 N -0.921 5.921 25 Si 0.935 3.065 26 H -0.291 1.291 27 H -0.287 1.287 28 H -0.282 1.282 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.038 0.962 36 H 0.055 0.945 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.412 0.588 40 H 0.092 0.908 41 H 0.060 0.940 42 H 0.121 0.879 43 H 0.052 0.948 44 H 0.045 0.955 45 H 0.105 0.895 46 H 0.065 0.935 47 H 0.006 0.994 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 7.719 6.432 10.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.053 4.053 3 N -0.223 5.223 4 C 0.016 3.984 5 C -0.028 4.028 6 C -0.197 4.197 7 C -0.191 4.191 8 O -0.084 6.084 9 C -0.195 4.195 10 C 0.386 3.614 11 O -0.430 6.430 12 N -0.332 5.332 13 C 0.016 3.984 14 C 0.018 3.982 15 H 0.054 0.946 16 C -0.019 4.019 17 O -0.315 6.315 18 C -0.031 4.031 19 C 0.024 3.976 20 N -0.331 5.331 21 C -0.372 4.372 22 H 0.082 0.918 23 C -0.223 4.223 24 N -0.566 5.566 25 Si 0.765 3.235 26 H -0.219 1.219 27 H -0.213 1.213 28 H -0.207 1.207 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.249 0.751 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.138 0.862 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.123 0.877 46 H 0.083 0.917 47 H 0.024 0.976 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.869 7.991 6.496 11.392 hybrid contribution 0.882 0.128 -1.316 1.589 sum -3.987 8.119 5.180 10.423 Atomic orbital electron populations 1.20398 0.83559 1.04435 1.04491 1.22515 0.99458 0.86165 0.97141 1.70267 1.00422 1.30666 1.20987 1.27518 0.96755 0.79041 0.95043 1.20137 0.89282 0.93131 1.00208 1.21846 1.04721 0.99098 0.94019 1.21812 1.04510 0.98974 0.93763 1.84534 1.29995 1.24645 1.69269 1.23027 0.81708 0.96690 1.18054 1.16392 0.85640 0.81808 0.77534 1.90761 1.16056 1.82422 1.53786 1.46006 1.10311 1.06177 1.70750 1.21308 0.96097 0.78894 1.02095 1.21597 0.91830 0.94812 0.89996 0.94616 1.22981 0.87440 0.88762 1.02755 1.87809 1.44010 1.61289 1.38403 1.23204 0.96714 0.97858 0.85303 1.21239 0.89132 0.87296 0.99930 1.44279 1.35857 1.29608 1.23385 1.19174 0.91906 1.07094 1.19018 0.91809 1.25535 0.95399 0.99445 1.01967 1.70074 0.98313 1.45745 1.42483 0.85780 0.77126 0.80074 0.80551 1.21855 1.21295 1.20727 0.88646 0.88968 0.89777 0.87641 0.91265 0.87632 0.94260 0.92607 0.87894 0.91506 0.75142 0.88989 0.92153 0.86162 0.92948 0.93698 0.87723 0.91694 0.97551 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.96 9.87 71.24 0.70 -1.26 16 2 C 0.07 2.45 7.16 41.83 0.30 2.75 16 3 N -0.49 -16.14 11.26 -291.07 -3.28 -19.42 16 4 C 0.22 7.14 6.82 88.29 0.60 7.74 16 5 C -0.01 -0.19 3.39 -11.54 -0.04 -0.22 16 6 C -0.14 -2.84 9.18 71.98 0.66 -2.18 16 7 C -0.13 -2.27 9.18 71.98 0.66 -1.61 16 8 O -0.20 -7.57 10.57 -7.12 -0.08 -7.64 16 9 C -0.14 -5.36 7.18 24.05 0.17 -5.19 16 10 C 0.60 23.66 7.79 86.46 0.67 24.33 16 11 O -0.55 -22.09 14.79 -4.27 -0.06 -22.15 16 12 N -0.68 -26.84 3.78 -467.02 -1.77 -28.61 16 13 C 0.14 4.94 4.45 86.38 0.38 5.33 16 14 C 0.12 4.65 3.21 44.97 0.14 4.80 16 15 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 16 C 0.06 1.89 6.29 72.08 0.45 2.34 16 17 O -0.40 -14.22 10.74 -148.98 -1.60 -15.82 16 18 C 0.05 1.71 6.98 72.08 0.50 2.22 16 19 C 0.15 6.76 5.37 86.35 0.46 7.23 16 20 N -0.61 -27.71 3.03 -673.74 -2.04 -29.75 16 21 C -0.24 -12.13 7.04 84.03 0.59 -11.54 16 22 H 0.06 3.29 5.84 -2.91 -0.02 3.27 16 23 C -0.03 -1.38 5.06 84.86 0.43 -0.95 16 24 N -0.92 -50.60 11.17 21.65 0.24 -50.36 16 25 Si 0.93 44.25 29.57 68.60 2.03 46.28 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 27 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 28 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 29 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.08 2.51 6.47 -2.38 -0.02 2.49 16 32 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.41 17.72 7.11 -92.71 -0.66 17.06 16 40 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.06 2.29 7.56 -2.39 -0.02 2.28 16 42 H 0.12 2.99 8.14 -2.39 -0.02 2.98 16 43 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 46 H 0.06 3.28 6.37 -2.39 -0.02 3.26 16 47 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 48 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 Total: -1.00 -63.98 387.13 0.47 -63.51 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.31 Total: 30.16 kcal Atomic # 6 Polarization: 27.09 SS G_CDS: 6.70 Total: 33.79 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -6.84 Total: -128.13 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -1.74 Total: -45.61 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -63.98 0.47 -63.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051153162.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.660 kcal (2) G-P(sol) polarization free energy of solvation -63.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds