Wall clock time and date at job start Tue Mar 31 2020 21:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47127 * 2 1 4 4 C 1.50694 * 110.54515 * 291.87576 * 3 2 1 5 5 O 1.21281 * 119.99640 * 359.40220 * 4 3 2 6 6 N 1.34777 * 120.00248 * 179.39151 * 4 3 2 7 7 C 1.47124 * 121.05558 * 355.94085 * 6 4 3 8 8 C 1.53223 * 108.73057 * 127.76618 * 7 6 4 9 9 O 1.43111 * 109.34425 * 54.12795 * 8 7 6 10 10 C 1.42492 * 113.97539 * 300.04246 * 9 8 7 11 11 C 1.53464 * 113.76873 * 286.79398 * 10 9 8 12 12 N 1.47670 * 85.97182 * 268.71839 * 11 10 9 13 13 C 1.36933 * 134.45545 * 155.74718 * 12 11 10 14 14 H 1.07999 * 119.99764 * 179.97438 * 13 12 11 15 15 C 1.38810 * 119.99997 * 359.94746 * 13 12 11 16 16 N 1.31619 * 120.00116 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00069 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47371 * 59.99676 * 17 15 13 19 19 H 1.48497 * 109.47280 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47077 * 299.99795 * 17 15 13 21 21 C 1.47670 * 91.08448 * 335.70872 * 12 11 10 22 22 C 1.47346 * 121.05373 * 175.64926 * 6 4 3 23 23 C 1.54787 * 110.61470 * 169.24687 * 3 2 1 24 24 C 1.54482 * 101.69720 * 266.40606 * 23 3 2 25 25 N 1.46760 * 105.46868 * 334.39016 * 24 23 3 26 26 C 1.34420 * 111.30650 * 17.01892 * 25 24 23 27 27 O 1.21277 * 124.94403 * 179.55844 * 26 25 24 28 28 H 1.09002 * 109.47150 * 304.08076 * 1 2 3 29 29 H 1.09006 * 109.47091 * 64.07685 * 1 2 3 30 30 H 1.09001 * 109.47743 * 184.07893 * 1 2 3 31 31 H 1.09003 * 109.46819 * 240.00439 * 2 1 3 32 32 H 1.08998 * 109.46944 * 120.00703 * 2 1 3 33 33 H 1.09003 * 109.58883 * 247.54093 * 7 6 4 34 34 H 1.09001 * 109.59633 * 7.84077 * 7 6 4 35 35 H 1.08999 * 109.48974 * 174.08613 * 8 7 6 36 36 H 1.08999 * 109.49373 * 294.16322 * 8 7 6 37 37 H 1.09001 * 113.79131 * 22.98264 * 11 10 9 38 38 H 1.08996 * 113.78988 * 154.45232 * 11 10 9 39 39 H 0.97004 * 120.00244 * 179.97438 * 16 15 13 40 40 H 1.08996 * 113.79688 * 270.02631 * 21 12 11 41 41 H 1.09005 * 113.89467 * 138.57596 * 21 12 11 42 42 H 1.08996 * 109.74534 * 348.03990 * 22 6 4 43 43 H 1.08994 * 109.74233 * 108.76437 * 22 6 4 44 44 H 1.09002 * 111.16970 * 148.23350 * 23 3 2 45 45 H 1.09000 * 110.86791 * 24.44122 * 23 3 2 46 46 H 1.08994 * 110.24650 * 215.39391 * 24 23 3 47 47 H 1.08996 * 110.32140 * 93.42588 * 24 23 3 48 48 H 0.97003 * 124.35068 * 197.03869 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.7205 2.1163 -1.3095 5 8 1.1443 1.5026 -2.1825 6 7 2.0750 3.4010 -1.5104 7 6 2.6948 4.1940 -0.4373 8 6 3.9880 4.8187 -0.9713 9 8 3.7020 5.5518 -2.1666 10 6 3.1510 4.7588 -3.2144 11 6 4.1691 3.8275 -3.8862 12 7 4.4028 4.9367 -4.8326 13 6 5.4460 5.3053 -5.6394 14 1 5.3653 6.1876 -6.2570 15 6 6.6073 4.5453 -5.6630 16 7 6.7056 3.4701 -4.9103 17 14 8.0307 5.0486 -6.7630 18 1 8.4974 6.4050 -6.3792 19 1 9.1442 4.0787 -6.6064 20 1 7.5818 5.0617 -8.1785 21 6 3.0602 5.4884 -4.5611 22 6 1.8599 4.0539 -2.8137 23 6 3.5635 1.4818 0.2703 24 6 3.6049 1.6783 1.8020 25 7 2.3385 2.3349 2.1468 26 6 1.4404 2.2159 1.1537 27 8 0.3121 2.6596 1.1807 28 1 -0.3633 0.5759 0.8512 29 1 -0.3633 0.4493 -0.9243 30 1 -0.3634 -1.0250 0.0731 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0105 4.9823 -0.1235 34 1 2.9214 3.5477 0.4107 35 1 4.4029 5.4926 -0.2217 36 1 4.7086 4.0310 -1.1913 37 1 5.0309 3.5941 -3.2609 38 1 3.7225 2.9452 -4.3443 39 1 7.5170 2.9388 -4.9270 40 1 2.2836 5.1001 -5.2201 41 1 3.0389 6.5746 -4.4723 42 1 1.6027 3.3051 -3.5627 43 1 1.0555 4.7846 -2.7311 44 1 4.0329 2.3208 -0.2434 45 1 4.0329 0.5403 -0.0150 46 1 4.4465 2.3134 2.0782 47 1 3.6792 0.7144 2.3054 48 1 2.1710 2.7959 2.9837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053292214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:02 Heat of formation + Delta-G solvation = -25.847768 kcal Electronic energy + Delta-G solvation = -32214.794055 eV Core-core repulsion = 28079.907999 eV Total energy + Delta-G solvation = -4134.886056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.96495 -39.85527 -38.48067 -36.80601 -36.27046 -34.58688 -33.96393 -32.28532 -30.63896 -29.85372 -28.45488 -27.38597 -25.89481 -25.10399 -23.48848 -23.05302 -22.59015 -22.23342 -20.92525 -18.93009 -18.75932 -17.82587 -17.03373 -16.91130 -16.59287 -16.09108 -15.48157 -15.24456 -15.04971 -14.77500 -14.56319 -14.45194 -14.14563 -13.98955 -13.70121 -13.47528 -13.30086 -13.03670 -12.99430 -12.64008 -12.53899 -12.42399 -12.20787 -11.99776 -11.61276 -11.34592 -11.18034 -11.10114 -11.03189 -10.88617 -10.82132 -10.67482 -10.27052 -10.04321 -9.95478 -9.64600 -9.57752 -9.34898 -9.26114 -8.82658 -8.25555 -6.88445 -5.75865 -3.07691 2.21559 2.49839 2.85733 3.02425 3.40801 3.44464 3.45496 3.96859 3.99834 4.05022 4.26814 4.44551 4.49070 4.58713 4.82947 4.86928 4.96725 5.10107 5.11297 5.19863 5.24355 5.30796 5.33272 5.36927 5.47303 5.55100 5.57501 5.67896 5.72314 5.78291 5.87479 5.95404 6.06953 6.09809 6.28278 6.35122 6.40995 6.44480 6.49010 6.55288 6.59926 6.98467 7.16322 7.39624 7.48345 7.78292 7.87738 7.97434 8.16870 9.04457 9.71100 10.57543 11.41380 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018208 B = 0.003557 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.399864 B = 7870.583166 C = 7982.180640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.086 4.086 3 C -0.115 4.115 4 C 0.544 3.456 5 O -0.523 6.523 6 N -0.602 5.602 7 C 0.058 3.942 8 C 0.049 3.951 9 O -0.339 6.339 10 C 0.048 3.952 11 C 0.152 3.848 12 N -0.603 5.603 13 C -0.218 4.218 14 H 0.081 0.919 15 C -0.007 4.007 16 N -0.924 5.924 17 Si 0.913 3.087 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.137 3.863 22 C 0.101 3.899 23 C -0.138 4.138 24 C 0.100 3.900 25 N -0.734 5.734 26 C 0.536 3.464 27 O -0.510 6.510 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.253 0.747 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.829 -4.874 17.610 19.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.124 4.124 3 C -0.122 4.122 4 C 0.330 3.670 5 O -0.398 6.398 6 N -0.336 5.336 7 C -0.066 4.066 8 C -0.029 4.029 9 O -0.257 6.257 10 C 0.006 3.994 11 C 0.027 3.973 12 N -0.328 5.328 13 C -0.346 4.346 14 H 0.098 0.902 15 C -0.203 4.203 16 N -0.571 5.571 17 Si 0.743 3.257 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.010 3.990 22 C -0.022 4.022 23 C -0.176 4.176 24 C -0.025 4.025 25 N -0.391 5.391 26 C 0.321 3.679 27 O -0.384 6.384 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.121 0.879 43 H 0.088 0.912 44 H 0.117 0.883 45 H 0.124 0.876 46 H 0.108 0.892 47 H 0.098 0.902 48 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -7.363 -4.857 16.868 19.035 hybrid contribution 0.843 0.142 -0.088 0.860 sum -6.519 -4.715 16.780 18.609 Atomic orbital electron populations 1.21933 0.94497 1.01648 1.03863 1.21244 0.97519 0.90465 1.03178 1.21791 0.97906 0.98924 0.93587 1.19588 0.78486 0.81120 0.87797 1.90675 1.40645 1.63681 1.44807 1.48002 1.61099 1.10982 1.13487 1.22809 0.96621 0.96448 0.90721 1.22863 0.94525 0.97249 0.88256 1.87944 1.82677 1.33530 1.21501 1.23637 0.92384 0.94969 0.88386 1.22681 0.94551 0.90196 0.89918 1.45762 1.10127 1.27064 1.49894 1.18964 0.91085 1.07587 1.16955 0.90168 1.24743 0.98054 0.97323 1.00208 1.69801 1.27530 1.17348 1.42439 0.86190 0.81854 0.77496 0.80167 1.21085 1.21597 1.21191 1.22486 0.89530 0.97984 0.88995 1.22205 0.98061 0.97325 0.84603 1.23095 0.92938 1.06128 0.95406 1.22158 0.86283 0.98681 0.95349 1.46246 1.15115 1.57870 1.19893 1.20253 0.84878 0.78654 0.84103 1.90788 1.17864 1.49175 1.80609 0.92334 0.90806 0.92644 0.89495 0.91116 0.90645 0.88683 0.88136 0.92026 0.90611 0.94865 0.93701 0.93151 0.92540 0.87869 0.91212 0.88334 0.87631 0.89218 0.90244 0.74642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.30 37.16 0.35 -1.68 16 2 C -0.09 -0.95 4.63 -26.74 -0.12 -1.07 16 3 C -0.12 -1.37 0.44 -155.59 -0.07 -1.44 16 4 C 0.54 8.67 6.26 -10.99 -0.07 8.60 16 5 O -0.52 -9.82 13.87 5.56 0.08 -9.74 16 6 N -0.60 -9.43 2.97 -172.70 -0.51 -9.95 16 7 C 0.06 0.75 4.77 -3.59 -0.02 0.73 16 8 C 0.05 0.71 6.68 37.27 0.25 0.96 16 9 O -0.34 -6.47 10.52 -35.23 -0.37 -6.84 16 10 C 0.05 0.93 1.21 -90.53 -0.11 0.83 16 11 C 0.15 3.61 6.64 -3.17 -0.02 3.59 16 12 N -0.60 -15.67 3.70 -180.33 -0.67 -16.34 16 13 C -0.22 -6.19 10.70 -15.06 -0.16 -6.35 16 14 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 15 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 16 N -0.92 -27.22 11.39 55.49 0.63 -26.59 16 17 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 C 0.14 2.86 8.33 -3.18 -0.03 2.83 16 22 C 0.10 1.73 5.73 -3.86 -0.02 1.70 16 23 C -0.14 -1.21 5.42 -25.01 -0.14 -1.35 16 24 C 0.10 0.56 7.35 -3.12 -0.02 0.53 16 25 N -0.73 -5.53 5.60 -59.21 -0.33 -5.86 16 26 C 0.54 6.34 4.30 -10.86 -0.05 6.29 16 27 O -0.51 -7.95 16.25 5.56 0.09 -7.85 16 28 H 0.06 0.78 6.02 -51.93 -0.31 0.46 16 29 H 0.07 1.12 6.42 -51.93 -0.33 0.79 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.01 7.89 -51.93 -0.41 0.60 16 32 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 1.01 2.51 -51.93 -0.13 0.88 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.95 6.30 -51.93 -0.33 0.63 16 37 H 0.08 1.97 6.31 -51.93 -0.33 1.64 16 38 H 0.03 0.83 7.92 -51.93 -0.41 0.42 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.10 1.87 6.92 -51.93 -0.36 1.52 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.10 1.00 4.82 -51.93 -0.25 0.75 16 45 H 0.11 0.79 7.91 -51.93 -0.41 0.37 16 46 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.41 2.32 8.96 -40.82 -0.37 1.95 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -36.14 363.76 -7.94 -44.08 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.99 Total: 2.56 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: -0.32 Total: 13.88 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.88 Total: -58.73 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.20 Total: -24.43 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.14 -7.94 -44.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053292214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.232 kcal (2) G-P(sol) polarization free energy of solvation -36.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds