Wall clock time and date at job start Tue Mar 31 2020 21:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47127 * 2 1 4 4 C 1.50694 * 110.54515 * 291.87576 * 3 2 1 5 5 O 1.21281 * 119.99640 * 359.40220 * 4 3 2 6 6 N 1.34777 * 120.00248 * 179.39151 * 4 3 2 7 7 C 1.47124 * 121.05558 * 355.94085 * 6 4 3 8 8 C 1.53223 * 108.73057 * 127.76618 * 7 6 4 9 9 O 1.43111 * 109.34425 * 54.12795 * 8 7 6 10 10 C 1.42492 * 113.97539 * 300.04246 * 9 8 7 11 11 C 1.53464 * 113.76873 * 286.79398 * 10 9 8 12 12 N 1.47670 * 85.97182 * 268.71839 * 11 10 9 13 13 C 1.36933 * 134.45545 * 155.74718 * 12 11 10 14 14 H 1.07999 * 119.99764 * 179.97438 * 13 12 11 15 15 C 1.38810 * 119.99997 * 359.94746 * 13 12 11 16 16 N 1.31619 * 120.00116 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00069 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47371 * 59.99676 * 17 15 13 19 19 H 1.48497 * 109.47280 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47077 * 299.99795 * 17 15 13 21 21 C 1.47670 * 91.08448 * 335.70872 * 12 11 10 22 22 C 1.47346 * 121.05373 * 175.64926 * 6 4 3 23 23 C 1.54787 * 110.61470 * 169.24687 * 3 2 1 24 24 C 1.54482 * 101.69720 * 266.40606 * 23 3 2 25 25 N 1.46760 * 105.46868 * 334.39016 * 24 23 3 26 26 C 1.34420 * 111.30650 * 17.01892 * 25 24 23 27 27 O 1.21277 * 124.94403 * 179.55844 * 26 25 24 28 28 H 1.09002 * 109.47150 * 304.08076 * 1 2 3 29 29 H 1.09006 * 109.47091 * 64.07685 * 1 2 3 30 30 H 1.09001 * 109.47743 * 184.07893 * 1 2 3 31 31 H 1.09003 * 109.46819 * 240.00439 * 2 1 3 32 32 H 1.08998 * 109.46944 * 120.00703 * 2 1 3 33 33 H 1.09003 * 109.58883 * 247.54093 * 7 6 4 34 34 H 1.09001 * 109.59633 * 7.84077 * 7 6 4 35 35 H 1.08999 * 109.48974 * 174.08613 * 8 7 6 36 36 H 1.08999 * 109.49373 * 294.16322 * 8 7 6 37 37 H 1.09001 * 113.79131 * 22.98264 * 11 10 9 38 38 H 1.08996 * 113.78988 * 154.45232 * 11 10 9 39 39 H 0.97004 * 120.00244 * 179.97438 * 16 15 13 40 40 H 1.08996 * 113.79688 * 270.02631 * 21 12 11 41 41 H 1.09005 * 113.89467 * 138.57596 * 21 12 11 42 42 H 1.08996 * 109.74534 * 348.03990 * 22 6 4 43 43 H 1.08994 * 109.74233 * 108.76437 * 22 6 4 44 44 H 1.09002 * 111.16970 * 148.23350 * 23 3 2 45 45 H 1.09000 * 110.86791 * 24.44122 * 23 3 2 46 46 H 1.08994 * 110.24650 * 215.39391 * 24 23 3 47 47 H 1.08996 * 110.32140 * 93.42588 * 24 23 3 48 48 H 0.97003 * 124.35068 * 197.03869 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.7205 2.1163 -1.3095 5 8 1.1443 1.5026 -2.1825 6 7 2.0750 3.4010 -1.5104 7 6 2.6948 4.1940 -0.4373 8 6 3.9880 4.8187 -0.9713 9 8 3.7020 5.5518 -2.1666 10 6 3.1510 4.7588 -3.2144 11 6 4.1691 3.8275 -3.8862 12 7 4.4028 4.9367 -4.8326 13 6 5.4460 5.3053 -5.6394 14 1 5.3653 6.1876 -6.2570 15 6 6.6073 4.5453 -5.6630 16 7 6.7056 3.4701 -4.9103 17 14 8.0307 5.0486 -6.7630 18 1 8.4974 6.4050 -6.3792 19 1 9.1442 4.0787 -6.6064 20 1 7.5818 5.0617 -8.1785 21 6 3.0602 5.4884 -4.5611 22 6 1.8599 4.0539 -2.8137 23 6 3.5635 1.4818 0.2703 24 6 3.6049 1.6783 1.8020 25 7 2.3385 2.3349 2.1468 26 6 1.4404 2.2159 1.1537 27 8 0.3121 2.6596 1.1807 28 1 -0.3633 0.5759 0.8512 29 1 -0.3633 0.4493 -0.9243 30 1 -0.3634 -1.0250 0.0731 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0105 4.9823 -0.1235 34 1 2.9214 3.5477 0.4107 35 1 4.4029 5.4926 -0.2217 36 1 4.7086 4.0310 -1.1913 37 1 5.0309 3.5941 -3.2609 38 1 3.7225 2.9452 -4.3443 39 1 7.5170 2.9388 -4.9270 40 1 2.2836 5.1001 -5.2201 41 1 3.0389 6.5746 -4.4723 42 1 1.6027 3.3051 -3.5627 43 1 1.0555 4.7846 -2.7311 44 1 4.0329 2.3208 -0.2434 45 1 4.0329 0.5403 -0.0150 46 1 4.4465 2.3134 2.0782 47 1 3.6792 0.7144 2.3054 48 1 2.1710 2.7959 2.9837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053292214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:01 Heat of formation + Delta-G solvation = -54.383218 kcal Electronic energy + Delta-G solvation = -32216.031445 eV Core-core repulsion = 28079.907999 eV Total energy + Delta-G solvation = -4136.123446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.94617 -41.25865 -39.76039 -37.93401 -37.60007 -35.92102 -34.88591 -34.29109 -31.85979 -31.01066 -29.68671 -28.72624 -27.37866 -26.88832 -24.80757 -24.03653 -23.97232 -23.04414 -22.25849 -20.44564 -19.89881 -18.83158 -18.68066 -18.04133 -17.78545 -17.39533 -17.00926 -16.62448 -16.38997 -16.01680 -15.80746 -15.69991 -15.38623 -15.08084 -15.00606 -14.87884 -14.53122 -14.35213 -14.15611 -13.91148 -13.81082 -13.38171 -13.23370 -13.18983 -13.04053 -12.91017 -12.73276 -12.59591 -12.51780 -12.13642 -12.08780 -12.00845 -11.85900 -11.72145 -11.48367 -10.97696 -10.94295 -10.84684 -10.74859 -10.07462 -9.63471 -8.94830 -7.90344 -5.24505 1.27793 1.37357 1.45589 1.49409 1.55108 1.70269 2.29562 2.46469 2.58772 3.09604 3.18903 3.25219 3.33960 3.45226 3.57140 3.62978 3.73168 3.81637 3.88207 3.99417 4.16273 4.27178 4.30435 4.37538 4.42422 4.52590 4.57768 4.67389 4.72136 4.73541 4.75460 4.78852 4.85242 4.94115 4.97051 5.02483 5.11220 5.14837 5.18673 5.21643 5.37754 5.44670 5.69439 5.88830 5.91896 6.18081 6.28691 6.89795 6.93130 7.12691 7.58529 8.51625 9.26271 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018208 B = 0.003557 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.399864 B = 7870.583166 C = 7982.180640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.085 4.085 3 C -0.118 4.118 4 C 0.532 3.468 5 O -0.562 6.562 6 N -0.608 5.608 7 C 0.065 3.935 8 C 0.045 3.955 9 O -0.359 6.359 10 C 0.078 3.922 11 C 0.156 3.844 12 N -0.632 5.632 13 C -0.237 4.237 14 H 0.084 0.916 15 C -0.063 4.063 16 N -0.953 5.953 17 Si 0.980 3.020 18 H -0.275 1.275 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.133 3.867 22 C 0.107 3.893 23 C -0.140 4.140 24 C 0.103 3.897 25 N -0.713 5.713 26 C 0.534 3.466 27 O -0.555 6.555 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.136 0.864 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.011 0.989 39 H 0.249 0.751 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.111 0.889 48 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.816 -4.644 20.092 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.123 4.123 3 C -0.124 4.124 4 C 0.320 3.680 5 O -0.440 6.440 6 N -0.341 5.341 7 C -0.057 4.057 8 C -0.032 4.032 9 O -0.277 6.277 10 C 0.036 3.964 11 C 0.031 3.969 12 N -0.358 5.358 13 C -0.365 4.365 14 H 0.102 0.898 15 C -0.256 4.256 16 N -0.602 5.602 17 Si 0.808 3.192 18 H -0.201 1.201 19 H -0.218 1.218 20 H -0.205 1.205 21 C 0.008 3.992 22 C -0.016 4.016 23 C -0.178 4.178 24 C -0.020 4.020 25 N -0.370 5.370 26 C 0.318 3.682 27 O -0.433 6.433 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.139 0.861 35 H 0.154 0.846 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.029 0.971 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.129 0.871 48 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -6.334 -4.599 19.405 20.924 hybrid contribution 0.515 0.058 -0.845 0.991 sum -5.818 -4.542 18.560 19.974 Atomic orbital electron populations 1.21863 0.95901 1.02225 1.01542 1.21304 0.96267 0.90259 1.04484 1.21852 1.00312 0.98907 0.91368 1.20442 0.77545 0.80927 0.89079 1.90649 1.42285 1.64512 1.46576 1.48137 1.61216 1.11402 1.13362 1.22899 0.95622 0.96651 0.90548 1.23158 0.95110 0.97627 0.87290 1.87899 1.82833 1.34393 1.22616 1.23104 0.91879 0.93123 0.88324 1.22499 0.94724 0.89944 0.89771 1.46125 1.11643 1.28071 1.49995 1.19382 0.92170 1.07821 1.17150 0.89801 1.25598 1.00607 0.97537 1.01846 1.69992 1.27903 1.18379 1.43903 0.85132 0.78396 0.77249 0.78412 1.20117 1.21771 1.20524 1.22700 0.87730 0.98664 0.90137 1.21961 0.97026 0.97136 0.85514 1.23187 0.90194 1.06464 0.97945 1.22440 0.85923 1.00932 0.92738 1.46190 1.14802 1.56715 1.19300 1.20215 0.84693 0.78444 0.84799 1.90771 1.19832 1.51137 1.81514 0.93115 0.94339 0.90797 0.90478 0.87309 0.90146 0.86083 0.84601 0.93250 0.93318 0.97102 0.94197 0.91360 0.91587 0.89503 0.89482 0.89928 0.86094 0.86135 0.87077 0.73038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 9.30 71.98 0.67 -3.28 16 2 C -0.09 -1.77 4.63 30.59 0.14 -1.63 16 3 C -0.12 -2.66 0.44 -52.88 -0.02 -2.68 16 4 C 0.53 17.27 6.26 87.65 0.55 17.81 16 5 O -0.56 -22.22 13.87 -3.03 -0.04 -22.26 16 6 N -0.61 -19.12 2.97 -818.69 -2.43 -21.56 16 7 C 0.07 1.60 4.77 86.33 0.41 2.01 16 8 C 0.05 1.24 6.68 72.06 0.48 1.73 16 9 O -0.36 -13.52 10.52 -148.98 -1.57 -15.08 16 10 C 0.08 3.07 1.21 -10.64 -0.01 3.05 16 11 C 0.16 7.73 6.64 86.31 0.57 8.30 16 12 N -0.63 -33.65 3.70 -729.31 -2.70 -36.35 16 13 C -0.24 -13.65 10.70 84.03 0.90 -12.75 16 14 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 15 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 16 N -0.95 -57.60 11.39 21.65 0.25 -57.36 16 17 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 C 0.13 5.61 8.33 86.30 0.72 6.33 16 22 C 0.11 3.73 5.73 86.04 0.49 4.23 16 23 C -0.14 -2.10 5.42 31.71 0.17 -1.93 16 24 C 0.10 0.66 7.35 86.83 0.64 1.30 16 25 N -0.71 -8.06 5.60 -459.82 -2.57 -10.64 16 26 C 0.53 11.61 4.30 87.90 0.38 11.98 16 27 O -0.55 -16.90 16.25 -3.02 -0.05 -16.95 16 28 H 0.05 1.34 6.02 -2.39 -0.01 1.32 16 29 H 0.04 1.22 6.42 -2.38 -0.02 1.21 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.76 7.89 -2.39 -0.02 1.74 16 32 H 0.11 1.42 8.13 -2.39 -0.02 1.40 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.12 2.29 2.51 -2.39 -0.01 2.29 16 35 H 0.14 2.77 8.14 -2.39 -0.02 2.76 16 36 H 0.05 1.51 6.30 -2.39 -0.02 1.49 16 37 H 0.05 2.65 6.31 -2.39 -0.02 2.63 16 38 H 0.01 0.59 7.92 -2.39 -0.02 0.58 16 39 H 0.25 14.57 8.31 -92.71 -0.77 13.79 16 40 H 0.07 2.64 8.09 -2.39 -0.02 2.63 16 41 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 42 H 0.09 3.32 6.92 -2.39 -0.02 3.30 16 43 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.08 1.54 4.82 -2.39 -0.01 1.53 16 45 H 0.12 1.46 7.91 -2.39 -0.02 1.44 16 46 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 47 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.43 3.04 8.96 -92.71 -0.83 2.21 16 Total: -1.00 -83.13 363.76 -0.36 -83.49 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.17 Total: 17.35 kcal Atomic # 6 Polarization: 24.76 SS G_CDS: 6.56 Total: 31.32 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -7.46 Total: -125.90 kcal Atomic # 8 Polarization: -52.64 SS G_CDS: -1.66 Total: -54.29 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -83.13 -0.36 -83.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053292214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.110 kcal (2) G-P(sol) polarization free energy of solvation -83.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds