Wall clock time and date at job start Tue Mar 31 2020 21:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46676 * 2 1 4 4 C 1.50694 * 110.43955 * 54.51191 * 3 2 1 5 5 O 1.21280 * 120.00460 * 245.22135 * 4 3 2 6 6 N 1.34776 * 119.99695 * 64.94862 * 4 3 2 7 7 C 1.47136 * 121.05614 * 356.08038 * 6 4 3 8 8 C 1.53227 * 108.72873 * 127.78814 * 7 6 4 9 9 O 1.43102 * 109.34988 * 54.11832 * 8 7 6 10 10 C 1.42487 * 113.96828 * 300.04053 * 9 8 7 11 11 C 1.53476 * 113.75948 * 286.84490 * 10 9 8 12 12 N 1.47671 * 85.96796 * 268.70429 * 11 10 9 13 13 C 1.36936 * 134.45443 * 155.70548 * 12 11 10 14 14 H 1.08001 * 120.00103 * 187.03747 * 13 12 11 15 15 C 1.38809 * 119.99850 * 7.03707 * 13 12 11 16 16 N 1.31615 * 120.00175 * 354.86601 * 15 13 12 17 17 Si 1.86804 * 119.99974 * 174.86119 * 15 13 12 18 18 H 1.48492 * 109.46991 * 94.97370 * 17 15 13 19 19 H 1.48501 * 109.47125 * 214.97355 * 17 15 13 20 20 H 1.48500 * 109.46903 * 334.97141 * 17 15 13 21 21 C 1.47677 * 91.08858 * 335.71237 * 12 11 10 22 22 C 1.47340 * 121.05745 * 175.80570 * 6 4 3 23 23 C 1.54632 * 110.59790 * 177.13403 * 3 2 1 24 24 C 1.54482 * 101.76797 * 143.53065 * 23 3 2 25 25 N 1.46767 * 105.47168 * 334.58339 * 24 23 3 26 26 C 1.34420 * 111.30108 * 17.01366 * 25 24 23 27 27 O 1.21278 * 124.94155 * 179.55767 * 26 25 24 28 28 H 1.08989 * 109.47294 * 307.57333 * 1 2 3 29 29 H 1.09007 * 109.46926 * 67.57785 * 1 2 3 30 30 H 1.09002 * 109.46781 * 187.57277 * 1 2 3 31 31 H 1.08999 * 109.47117 * 240.00150 * 2 1 3 32 32 H 1.08997 * 109.46983 * 119.99551 * 2 1 3 33 33 H 1.09001 * 109.59396 * 247.55880 * 7 6 4 34 34 H 1.08996 * 109.59423 * 7.86323 * 7 6 4 35 35 H 1.09000 * 109.48429 * 174.08050 * 8 7 6 36 36 H 1.08994 * 109.49229 * 294.15083 * 8 7 6 37 37 H 1.08998 * 113.79498 * 22.97160 * 11 10 9 38 38 H 1.08999 * 113.78967 * 154.44589 * 11 10 9 39 39 H 0.97003 * 120.00514 * 180.02562 * 16 15 13 40 40 H 1.08999 * 113.78869 * 270.02299 * 21 12 11 41 41 H 1.08994 * 113.78932 * 138.55905 * 21 12 11 42 42 H 1.08999 * 109.75137 * 348.03786 * 22 6 4 43 43 H 1.09006 * 109.74971 * 108.76611 * 22 6 4 44 44 H 1.08997 * 110.96679 * 261.64669 * 23 3 2 45 45 H 1.09002 * 110.96909 * 25.41091 * 23 3 2 46 46 H 1.08999 * 110.24749 * 215.58544 * 24 23 3 47 47 H 1.08993 * 110.24617 * 93.58142 * 24 23 3 48 48 H 0.96997 * 124.35276 * 197.03677 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4424 2.2119 1.1498 5 8 0.6915 3.1394 0.9337 6 7 1.7382 1.8657 2.4183 7 6 2.5726 0.6892 2.7091 8 6 3.7152 1.1137 3.6375 9 8 3.1722 1.7610 4.7924 10 6 2.4108 2.9287 4.4972 11 6 3.2636 4.1324 4.0740 12 7 3.2805 4.4917 5.5062 13 6 4.1221 5.2222 6.3019 14 1 3.9695 5.2462 7.3708 15 6 5.1715 5.9319 5.7345 16 7 5.4195 5.8229 4.4466 17 14 6.2318 7.0419 6.7991 18 1 7.4393 6.2986 7.2401 19 1 6.6432 8.2340 6.0149 20 1 5.4556 7.4756 7.9885 21 6 2.0260 3.7473 5.7366 22 6 1.2414 2.6568 3.5576 23 6 3.5843 1.4737 0.0724 24 6 3.9178 2.6808 -0.8321 25 7 2.7865 2.7996 -1.7595 26 6 1.7165 2.1184 -1.3143 27 8 0.6473 2.0555 -1.8831 28 1 -0.3633 0.6266 0.8144 29 1 -0.3633 0.3920 -0.9500 30 1 -0.3633 -1.0187 0.1354 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9688 -0.0751 3.1984 34 1 2.9817 0.2925 1.7800 35 1 4.2796 0.2335 3.9454 36 1 4.3749 1.8031 3.1106 37 1 4.2417 3.8606 3.6772 38 1 2.7326 4.8488 3.4472 39 1 6.1531 6.3185 4.0501 40 1 1.1270 4.3492 5.6044 41 1 2.0210 3.1696 6.6609 42 1 0.8309 3.6010 3.1995 43 1 0.4704 2.0966 4.0868 44 1 3.9234 1.6461 1.0938 45 1 4.0122 0.5552 -0.3294 46 1 4.8396 2.4957 -1.3835 47 1 4.0111 3.5866 -0.2330 48 1 2.8081 3.3045 -2.5874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053292215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:05 Heat of formation + Delta-G solvation = -27.980731 kcal Electronic energy + Delta-G solvation = -32156.017785 eV Core-core repulsion = 28021.039236 eV Total energy + Delta-G solvation = -4134.978548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.71375 -39.91594 -38.35792 -36.65097 -36.19849 -34.91469 -34.08366 -32.28830 -30.53314 -29.84912 -28.24122 -27.41960 -26.05374 -25.15104 -23.71474 -22.89467 -22.68271 -22.17019 -20.78108 -18.94077 -18.82821 -17.56381 -17.15754 -16.76740 -16.44526 -15.98528 -15.78406 -15.13830 -14.92571 -14.73868 -14.52285 -14.36498 -14.16846 -14.06376 -13.73434 -13.47779 -13.39947 -13.21082 -12.99808 -12.72793 -12.60130 -12.36430 -12.08411 -11.88814 -11.60405 -11.38123 -11.29905 -11.17195 -11.07416 -10.90541 -10.85687 -10.69312 -10.29616 -10.01747 -9.81673 -9.65283 -9.49175 -9.31404 -9.22184 -8.83090 -8.31103 -6.90059 -5.80505 -3.11146 2.32384 2.57226 2.95541 3.23941 3.37880 3.43528 3.45321 3.90545 3.96276 4.13390 4.22770 4.42205 4.50699 4.70936 4.79670 4.90137 4.96114 5.05547 5.06835 5.18779 5.19792 5.28678 5.32113 5.34465 5.42368 5.50394 5.54230 5.65412 5.69022 5.75510 5.76716 5.89583 5.95105 6.02564 6.25485 6.29267 6.39750 6.46480 6.51365 6.62880 6.86936 6.95344 7.11003 7.33394 7.46425 7.74808 7.94051 8.10322 8.16315 9.01405 9.68026 10.55052 11.37439 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.016664 B = 0.003769 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.859404 B = 7426.511441 C = 8128.240663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.104 4.104 3 C -0.117 4.117 4 C 0.544 3.456 5 O -0.524 6.524 6 N -0.603 5.603 7 C 0.057 3.943 8 C 0.045 3.955 9 O -0.339 6.339 10 C 0.048 3.952 11 C 0.155 3.845 12 N -0.603 5.603 13 C -0.219 4.219 14 H 0.081 0.919 15 C -0.006 4.006 16 N -0.921 5.921 17 Si 0.910 3.090 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.136 3.864 22 C 0.101 3.899 23 C -0.137 4.137 24 C 0.098 3.902 25 N -0.729 5.729 26 C 0.551 3.449 27 O -0.512 6.512 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.253 0.747 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.788 -14.945 -10.200 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.142 4.142 3 C -0.124 4.124 4 C 0.330 3.670 5 O -0.400 6.400 6 N -0.337 5.337 7 C -0.066 4.066 8 C -0.033 4.033 9 O -0.257 6.257 10 C 0.006 3.994 11 C 0.030 3.970 12 N -0.329 5.329 13 C -0.346 4.346 14 H 0.099 0.901 15 C -0.202 4.202 16 N -0.568 5.568 17 Si 0.740 3.260 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.206 1.206 21 C 0.009 3.991 22 C -0.022 4.022 23 C -0.175 4.175 24 C -0.026 4.026 25 N -0.385 5.385 26 C 0.335 3.665 27 O -0.386 6.386 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.120 0.880 43 H 0.089 0.911 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.105 0.895 47 H 0.098 0.902 48 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.472 -14.370 -10.247 17.987 hybrid contribution 0.785 1.043 -0.043 1.306 sum -2.686 -13.327 -10.290 17.050 Atomic orbital electron populations 1.21909 0.94229 1.01568 1.04179 1.21657 0.97950 0.91165 1.03442 1.21702 0.97724 0.98675 0.94263 1.19571 0.81019 0.83635 0.82757 1.90765 1.35552 1.29681 1.83961 1.47994 1.51702 1.28694 1.05332 1.22890 0.94078 0.88273 1.01318 1.22917 0.94215 0.97944 0.88195 1.87946 1.68988 1.39766 1.29012 1.23651 0.91541 0.86931 0.97253 1.22612 0.97551 0.89205 0.87667 1.45756 1.21173 1.60824 1.05098 1.19001 1.05369 1.20762 0.89508 0.90083 1.24783 0.99348 1.00136 0.95966 1.69822 1.31835 1.45058 1.10130 0.86134 0.80273 0.80362 0.79226 1.21612 1.21657 1.20565 1.22497 0.91089 0.90821 0.94646 1.22203 0.96824 0.97241 0.85938 1.23076 0.91940 0.99749 1.02718 1.22135 0.89498 0.99132 0.91864 1.46071 1.14094 1.52950 1.25358 1.19852 0.83335 0.78154 0.85196 1.90691 1.24168 1.61669 1.62104 0.92712 0.90286 0.92447 0.90501 0.89866 0.90303 0.88036 0.87957 0.92107 0.91104 0.94799 0.93731 0.93196 0.92548 0.88030 0.91125 0.87801 0.88412 0.89490 0.90160 0.74817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.39 37.16 0.35 -1.51 16 2 C -0.10 -0.99 4.63 -26.73 -0.12 -1.12 16 3 C -0.12 -1.38 0.29 -155.67 -0.04 -1.43 16 4 C 0.54 8.30 4.93 -10.99 -0.05 8.25 16 5 O -0.52 -10.33 15.65 5.56 0.09 -10.24 16 6 N -0.60 -8.40 2.97 -172.69 -0.51 -8.91 16 7 C 0.06 0.60 4.38 -3.58 -0.02 0.58 16 8 C 0.05 0.58 6.69 37.27 0.25 0.83 16 9 O -0.34 -6.02 10.52 -35.23 -0.37 -6.39 16 10 C 0.05 0.89 1.21 -90.52 -0.11 0.78 16 11 C 0.16 3.59 6.54 -3.16 -0.02 3.57 16 12 N -0.60 -15.37 3.70 -180.31 -0.67 -16.04 16 13 C -0.22 -6.12 10.69 -15.06 -0.16 -6.28 16 14 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 15 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 16 N -0.92 -26.88 11.53 55.49 0.64 -26.24 16 17 Si 0.91 21.97 29.56 -169.99 -5.02 16.95 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.14 2.76 8.33 -3.18 -0.03 2.73 16 22 C 0.10 1.60 5.73 -3.86 -0.02 1.58 16 23 C -0.14 -1.19 4.85 -25.10 -0.12 -1.31 16 24 C 0.10 0.90 7.78 -3.12 -0.02 0.88 16 25 N -0.73 -8.03 6.24 -59.20 -0.37 -8.40 16 26 C 0.55 7.76 6.45 -10.86 -0.07 7.69 16 27 O -0.51 -8.91 15.68 5.56 0.09 -8.82 16 28 H 0.05 0.74 6.83 -51.94 -0.35 0.38 16 29 H 0.08 1.08 6.14 -51.92 -0.32 0.76 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.61 5.28 -51.93 -0.27 0.34 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.79 3.12 -51.93 -0.16 0.63 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.86 6.30 -51.93 -0.33 0.53 16 37 H 0.07 1.79 6.53 -51.93 -0.34 1.45 16 38 H 0.03 0.84 7.92 -51.93 -0.41 0.43 16 39 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.10 1.80 6.93 -51.93 -0.36 1.44 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.10 0.96 4.85 -51.93 -0.25 0.70 16 45 H 0.10 0.55 7.92 -51.93 -0.41 0.13 16 46 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.41 3.81 8.96 -40.82 -0.37 3.45 16 LS Contribution 364.70 15.07 5.50 5.50 Total: -1.00 -36.77 364.70 -7.85 -44.62 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.92 Total: 2.99 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: -0.29 Total: 14.98 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.91 Total: -59.58 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.20 Total: -25.45 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.77 -7.85 -44.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053292215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.636 kcal (2) G-P(sol) polarization free energy of solvation -36.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds