Wall clock time and date at job start Tue Mar 31 2020 21:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46676 * 2 1 4 4 C 1.50694 * 110.43955 * 54.51191 * 3 2 1 5 5 O 1.21280 * 120.00460 * 245.22135 * 4 3 2 6 6 N 1.34776 * 119.99695 * 64.94862 * 4 3 2 7 7 C 1.47136 * 121.05614 * 356.08038 * 6 4 3 8 8 C 1.53227 * 108.72873 * 127.78814 * 7 6 4 9 9 O 1.43102 * 109.34988 * 54.11832 * 8 7 6 10 10 C 1.42487 * 113.96828 * 300.04053 * 9 8 7 11 11 C 1.53476 * 113.75948 * 286.84490 * 10 9 8 12 12 N 1.47671 * 85.96796 * 268.70429 * 11 10 9 13 13 C 1.36936 * 134.45443 * 155.70548 * 12 11 10 14 14 H 1.08001 * 120.00103 * 187.03747 * 13 12 11 15 15 C 1.38809 * 119.99850 * 7.03707 * 13 12 11 16 16 N 1.31615 * 120.00175 * 354.86601 * 15 13 12 17 17 Si 1.86804 * 119.99974 * 174.86119 * 15 13 12 18 18 H 1.48492 * 109.46991 * 94.97370 * 17 15 13 19 19 H 1.48501 * 109.47125 * 214.97355 * 17 15 13 20 20 H 1.48500 * 109.46903 * 334.97141 * 17 15 13 21 21 C 1.47677 * 91.08858 * 335.71237 * 12 11 10 22 22 C 1.47340 * 121.05745 * 175.80570 * 6 4 3 23 23 C 1.54632 * 110.59790 * 177.13403 * 3 2 1 24 24 C 1.54482 * 101.76797 * 143.53065 * 23 3 2 25 25 N 1.46767 * 105.47168 * 334.58339 * 24 23 3 26 26 C 1.34420 * 111.30108 * 17.01366 * 25 24 23 27 27 O 1.21278 * 124.94155 * 179.55767 * 26 25 24 28 28 H 1.08989 * 109.47294 * 307.57333 * 1 2 3 29 29 H 1.09007 * 109.46926 * 67.57785 * 1 2 3 30 30 H 1.09002 * 109.46781 * 187.57277 * 1 2 3 31 31 H 1.08999 * 109.47117 * 240.00150 * 2 1 3 32 32 H 1.08997 * 109.46983 * 119.99551 * 2 1 3 33 33 H 1.09001 * 109.59396 * 247.55880 * 7 6 4 34 34 H 1.08996 * 109.59423 * 7.86323 * 7 6 4 35 35 H 1.09000 * 109.48429 * 174.08050 * 8 7 6 36 36 H 1.08994 * 109.49229 * 294.15083 * 8 7 6 37 37 H 1.08998 * 113.79498 * 22.97160 * 11 10 9 38 38 H 1.08999 * 113.78967 * 154.44589 * 11 10 9 39 39 H 0.97003 * 120.00514 * 180.02562 * 16 15 13 40 40 H 1.08999 * 113.78869 * 270.02299 * 21 12 11 41 41 H 1.08994 * 113.78932 * 138.55905 * 21 12 11 42 42 H 1.08999 * 109.75137 * 348.03786 * 22 6 4 43 43 H 1.09006 * 109.74971 * 108.76611 * 22 6 4 44 44 H 1.08997 * 110.96679 * 261.64669 * 23 3 2 45 45 H 1.09002 * 110.96909 * 25.41091 * 23 3 2 46 46 H 1.08999 * 110.24749 * 215.58544 * 24 23 3 47 47 H 1.08993 * 110.24617 * 93.58142 * 24 23 3 48 48 H 0.96997 * 124.35276 * 197.03677 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4424 2.2119 1.1498 5 8 0.6915 3.1394 0.9337 6 7 1.7382 1.8657 2.4183 7 6 2.5726 0.6892 2.7091 8 6 3.7152 1.1137 3.6375 9 8 3.1722 1.7610 4.7924 10 6 2.4108 2.9287 4.4972 11 6 3.2636 4.1324 4.0740 12 7 3.2805 4.4917 5.5062 13 6 4.1221 5.2222 6.3019 14 1 3.9695 5.2462 7.3708 15 6 5.1715 5.9319 5.7345 16 7 5.4195 5.8229 4.4466 17 14 6.2318 7.0419 6.7991 18 1 7.4393 6.2986 7.2401 19 1 6.6432 8.2340 6.0149 20 1 5.4556 7.4756 7.9885 21 6 2.0260 3.7473 5.7366 22 6 1.2414 2.6568 3.5576 23 6 3.5843 1.4737 0.0724 24 6 3.9178 2.6808 -0.8321 25 7 2.7865 2.7996 -1.7595 26 6 1.7165 2.1184 -1.3143 27 8 0.6473 2.0555 -1.8831 28 1 -0.3633 0.6266 0.8144 29 1 -0.3633 0.3920 -0.9500 30 1 -0.3633 -1.0187 0.1354 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9688 -0.0751 3.1984 34 1 2.9817 0.2925 1.7800 35 1 4.2796 0.2335 3.9454 36 1 4.3749 1.8031 3.1106 37 1 4.2417 3.8606 3.6772 38 1 2.7326 4.8488 3.4472 39 1 6.1531 6.3185 4.0501 40 1 1.1270 4.3492 5.6044 41 1 2.0210 3.1696 6.6609 42 1 0.8309 3.6010 3.1995 43 1 0.4704 2.0966 4.0868 44 1 3.9234 1.6461 1.0938 45 1 4.0122 0.5552 -0.3294 46 1 4.8396 2.4957 -1.3835 47 1 4.0111 3.5866 -0.2330 48 1 2.8081 3.3045 -2.5874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053292215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:04 Heat of formation + Delta-G solvation = -57.903551 kcal Electronic energy + Delta-G solvation = -32157.315335 eV Core-core repulsion = 28021.039236 eV Total energy + Delta-G solvation = -4136.276099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.75257 -41.25106 -39.66246 -37.91349 -37.44587 -36.07968 -35.12385 -34.25433 -31.69131 -30.94891 -29.56417 -28.58778 -27.59428 -26.87661 -24.83668 -24.17546 -23.74753 -23.17357 -22.10157 -20.37754 -19.88490 -18.81999 -18.54211 -18.11148 -17.67174 -17.30727 -16.97252 -16.84549 -16.07983 -15.94936 -15.76256 -15.59600 -15.32548 -15.25089 -14.94182 -14.79430 -14.48537 -14.42713 -14.26370 -14.02006 -13.76674 -13.70516 -13.26502 -12.97247 -12.92248 -12.81914 -12.77335 -12.54032 -12.37239 -12.18758 -12.03321 -11.92547 -11.86183 -11.70857 -11.44780 -10.95735 -10.91238 -10.80134 -10.60262 -10.14692 -9.57795 -8.93378 -7.92917 -5.25410 1.23125 1.43847 1.44903 1.46892 1.55766 1.90347 2.34265 2.45755 2.66009 2.99883 3.24549 3.27059 3.35674 3.37762 3.61028 3.65764 3.78258 3.92400 3.98566 4.11111 4.22890 4.30995 4.35171 4.41554 4.45060 4.61483 4.62902 4.67585 4.70191 4.73084 4.80125 4.82851 4.88659 4.95313 4.98347 5.01698 5.11383 5.14915 5.20236 5.26761 5.39645 5.46213 5.73848 5.88371 5.94947 6.22056 6.36478 6.89287 6.95837 7.16975 7.58080 8.52051 9.24592 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.016664 B = 0.003769 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.859404 B = 7426.511441 C = 8128.240663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.101 4.101 3 C -0.114 4.114 4 C 0.539 3.461 5 O -0.582 6.582 6 N -0.602 5.602 7 C 0.060 3.940 8 C 0.037 3.963 9 O -0.358 6.358 10 C 0.082 3.918 11 C 0.158 3.842 12 N -0.633 5.633 13 C -0.235 4.235 14 H 0.085 0.915 15 C -0.063 4.063 16 N -0.952 5.952 17 Si 0.977 3.023 18 H -0.283 1.283 19 H -0.295 1.295 20 H -0.269 1.269 21 C 0.131 3.869 22 C 0.108 3.892 23 C -0.131 4.131 24 C 0.092 3.908 25 N -0.722 5.722 26 C 0.536 3.464 27 O -0.556 6.556 28 H 0.028 0.972 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.005 0.995 39 H 0.248 0.752 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.146 0.854 46 H 0.127 0.873 47 H 0.053 0.947 48 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 -18.102 -9.795 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.138 4.138 3 C -0.120 4.120 4 C 0.327 3.673 5 O -0.461 6.461 6 N -0.334 5.334 7 C -0.061 4.061 8 C -0.040 4.040 9 O -0.276 6.276 10 C 0.040 3.960 11 C 0.032 3.968 12 N -0.359 5.359 13 C -0.363 4.363 14 H 0.102 0.898 15 C -0.256 4.256 16 N -0.601 5.601 17 Si 0.805 3.195 18 H -0.210 1.210 19 H -0.222 1.222 20 H -0.194 1.194 21 C 0.006 3.994 22 C -0.016 4.016 23 C -0.168 4.168 24 C -0.031 4.031 25 N -0.376 5.376 26 C 0.321 3.679 27 O -0.434 6.434 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.023 0.977 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.115 0.885 44 H 0.119 0.881 45 H 0.164 0.836 46 H 0.145 0.855 47 H 0.071 0.929 48 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -2.156 -17.569 -9.816 20.240 hybrid contribution 0.385 2.039 -0.168 2.081 sum -1.771 -15.530 -9.984 18.547 Atomic orbital electron populations 1.21865 0.96093 1.02281 1.01503 1.21790 0.96275 0.89630 1.06154 1.21740 0.99758 0.99310 0.91231 1.20249 0.80189 0.83038 0.83794 1.90736 1.38191 1.32333 1.84840 1.48074 1.51662 1.29239 1.04425 1.23174 0.93158 0.87162 1.02648 1.23288 0.95013 0.98452 0.87260 1.87907 1.69148 1.38882 1.31711 1.23033 0.91091 0.85919 0.95944 1.22435 0.96809 0.91092 0.86428 1.46138 1.22948 1.60948 1.05901 1.19404 1.05856 1.20803 0.90216 0.89760 1.25608 1.00945 1.01744 0.97272 1.70005 1.32406 1.45928 1.11715 0.85094 0.78606 0.78080 0.77763 1.21011 1.22178 1.19405 1.22712 0.89681 0.90782 0.96208 1.21942 0.96090 0.97230 0.86321 1.23240 0.89274 1.01529 1.02765 1.22330 0.90318 0.98541 0.91943 1.46166 1.14041 1.51817 1.25623 1.20377 0.83188 0.78465 0.85915 1.90664 1.25848 1.63396 1.63498 0.95305 0.93193 0.89820 0.87987 0.86679 0.87550 0.84667 0.84132 0.93837 0.93786 0.97745 0.94266 0.91778 0.91360 0.90572 0.88455 0.88146 0.83590 0.85520 0.92860 0.74161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 9.39 71.98 0.68 -2.77 16 2 C -0.10 -1.55 4.63 30.60 0.14 -1.41 16 3 C -0.11 -2.49 0.29 -52.93 -0.02 -2.50 16 4 C 0.54 16.39 4.93 87.66 0.43 16.82 16 5 O -0.58 -24.13 15.65 -3.03 -0.05 -24.18 16 6 N -0.60 -15.96 2.97 -818.66 -2.43 -18.39 16 7 C 0.06 1.01 4.38 86.33 0.38 1.39 16 8 C 0.04 0.83 6.69 72.06 0.48 1.31 16 9 O -0.36 -12.07 10.52 -148.98 -1.57 -13.64 16 10 C 0.08 3.02 1.21 -10.63 -0.01 3.01 16 11 C 0.16 7.63 6.54 86.31 0.56 8.20 16 12 N -0.63 -33.02 3.70 -729.26 -2.70 -35.72 16 13 C -0.23 -13.34 10.69 84.03 0.90 -12.44 16 14 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 15 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 16 N -0.95 -57.29 11.53 21.65 0.25 -57.04 16 17 Si 0.98 45.75 29.56 68.60 2.03 47.78 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 C 0.13 5.33 8.33 86.30 0.72 6.05 16 22 C 0.11 3.39 5.73 86.04 0.49 3.89 16 23 C -0.13 -1.83 4.85 31.65 0.15 -1.68 16 24 C 0.09 1.54 7.78 86.83 0.68 2.21 16 25 N -0.72 -15.48 6.24 -459.80 -2.87 -18.35 16 26 C 0.54 15.01 6.45 87.90 0.57 15.57 16 27 O -0.56 -20.01 15.68 -3.02 -0.05 -20.05 16 28 H 0.03 0.75 6.83 -2.39 -0.02 0.74 16 29 H 0.05 1.38 6.14 -2.38 -0.01 1.36 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.12 1.02 5.28 -2.39 -0.01 1.00 16 33 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.14 1.38 3.12 -2.39 -0.01 1.37 16 35 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.04 1.16 6.30 -2.39 -0.02 1.15 16 37 H 0.04 2.33 6.53 -2.39 -0.02 2.31 16 38 H 0.00 0.25 7.92 -2.39 -0.02 0.24 16 39 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.06 2.43 8.09 -2.39 -0.02 2.41 16 41 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.08 2.82 6.93 -2.39 -0.02 2.80 16 43 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 44 H 0.10 1.55 4.85 -2.39 -0.01 1.53 16 45 H 0.15 0.71 7.92 -2.39 -0.02 0.69 16 46 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.42 7.67 8.96 -92.71 -0.83 6.84 16 Total: -1.00 -87.13 364.70 -0.59 -87.72 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.17 Total: 17.32 kcal Atomic # 6 Polarization: 27.92 SS G_CDS: 6.62 Total: 34.54 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -7.75 Total: -129.50 kcal Atomic # 8 Polarization: -56.20 SS G_CDS: -1.66 Total: -57.87 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -87.13 -0.59 -87.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053292215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.819 kcal (2) G-P(sol) polarization free energy of solvation -87.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds