Wall clock time and date at job start Tue Mar 31 2020 21:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50709 * 109.46883 * 2 1 4 4 O 1.33491 * 126.83108 * 270.02337 * 3 2 1 5 5 N 1.20653 * 113.15577 * 180.02562 * 4 3 2 6 6 C 1.30012 * 112.30613 * 359.97438 * 5 4 3 7 7 C 1.50691 * 127.33899 * 180.02562 * 6 5 4 8 8 C 1.37360 * 126.82514 * 89.71120 * 3 2 1 9 9 C 1.47396 * 128.56761 * 359.96442 * 8 3 2 10 10 O 1.21612 * 120.00182 * 89.99500 * 9 8 3 11 11 N 1.34780 * 119.99621 * 269.99995 * 9 8 3 12 12 C 1.46500 * 119.99604 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47020 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.46941 * 304.99949 * 13 12 11 15 15 C 1.54807 * 109.47048 * 185.00746 * 13 12 11 16 16 N 1.45118 * 109.53723 * 172.11029 * 15 13 12 17 17 C 1.36942 * 118.76024 * 269.28986 * 16 15 13 18 18 H 1.08000 * 119.99526 * 26.09602 * 17 16 15 19 19 C 1.38808 * 120.00190 * 206.09760 * 17 16 15 20 20 N 1.31617 * 120.00100 * 15.46550 * 19 17 16 21 21 Si 1.86800 * 119.99960 * 195.46394 * 19 17 16 22 22 H 1.48505 * 109.47068 * 89.99990 * 21 19 17 23 23 H 1.48498 * 109.47417 * 209.99864 * 21 19 17 24 24 H 1.48498 * 109.47481 * 330.00490 * 21 19 17 25 25 C 1.47513 * 122.48555 * 89.29177 * 16 15 13 26 26 C 1.53572 * 111.02339 * 318.37255 * 25 16 15 27 27 C 1.51534 * 109.58217 * 320.01726 * 26 25 16 28 28 O 1.38013 * 109.46782 * 65.00012 * 13 12 11 29 29 H 1.08995 * 109.47294 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47424 * 299.99884 * 1 2 3 31 31 H 1.09009 * 109.47457 * 60.00083 * 1 2 3 32 32 H 1.08997 * 109.47067 * 120.00031 * 2 1 3 33 33 H 1.08996 * 109.47522 * 240.00455 * 2 1 3 34 34 H 1.08995 * 109.47687 * 89.97811 * 7 6 5 35 35 H 1.09006 * 109.47238 * 209.97669 * 7 6 5 36 36 H 1.09007 * 109.47103 * 329.97309 * 7 6 5 37 37 H 0.96996 * 120.00189 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.47165 * 299.99655 * 12 11 9 39 39 H 1.08998 * 109.47704 * 59.99993 * 12 11 9 40 40 H 1.08994 * 109.45911 * 292.12983 * 15 13 12 41 41 H 1.09004 * 109.45727 * 52.09137 * 15 13 12 42 42 H 0.96999 * 120.00144 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.16286 * 197.97331 * 25 16 15 44 44 H 1.08994 * 109.12485 * 78.74099 * 25 16 15 45 45 H 1.09009 * 109.45034 * 199.99044 * 26 25 16 46 46 H 1.08992 * 109.45696 * 80.05724 * 26 25 16 47 47 H 1.08997 * 109.59404 * 331.62055 * 27 26 25 48 48 H 1.09001 * 109.59428 * 211.18568 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2985 2.1755 -1.0685 5 7 2.6898 3.2806 -0.7832 6 6 2.7552 3.4644 0.5022 7 6 3.1960 4.7105 1.2260 8 6 2.3014 2.1990 1.0995 9 6 2.1701 1.8512 2.5258 10 8 3.1086 1.3561 3.1199 11 7 1.0097 2.0817 3.1715 12 6 0.8793 1.7365 4.5893 13 6 -0.5257 2.0981 5.0751 14 1 -0.7241 3.1488 4.8636 15 6 -0.6238 1.8515 6.6003 16 7 -1.8872 2.3662 7.0949 17 6 -1.9431 3.6605 7.5385 18 1 -1.2469 4.3926 7.1567 19 6 -2.8943 4.0316 8.4788 20 7 -3.5340 3.1098 9.1669 21 14 -3.2667 5.8391 8.7677 22 1 -4.3583 6.2712 7.8583 23 1 -3.6889 6.0385 10.1774 24 1 -2.0490 6.6448 8.4970 25 6 -3.1138 1.5478 7.1379 26 6 -3.2583 0.7043 5.8627 27 6 -2.8397 1.5259 4.6602 28 8 -1.4544 1.3139 4.4215 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 2.3335 5.3537 1.4006 35 1 3.6441 4.4365 2.1812 36 1 3.9294 5.2425 0.6200 37 1 0.2612 2.4769 2.6977 38 1 1.0452 0.6671 4.7196 39 1 1.6175 2.2919 5.1679 40 1 -0.5645 0.7816 6.7996 41 1 0.1979 2.3606 7.1040 42 1 -4.1985 3.3690 9.8243 43 1 -3.9788 2.2042 7.2329 44 1 -3.0708 0.8852 8.0023 45 1 -4.2974 0.3956 5.7475 46 1 -2.6239 -0.1788 5.9377 47 1 -3.0188 2.5825 4.8592 48 1 -3.4129 1.2141 3.7871 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073886474.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:31 Heat of formation + Delta-G solvation = -6.044338 kcal Electronic energy + Delta-G solvation = -30266.928576 eV Core-core repulsion = 26132.901261 eV Total energy + Delta-G solvation = -4134.027315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.06477 -39.75532 -38.79611 -35.33585 -35.08762 -34.72855 -34.69142 -32.19860 -31.54754 -30.60115 -29.08462 -28.60169 -26.02923 -25.48437 -24.55180 -23.85450 -22.62846 -21.01880 -20.78413 -19.96021 -19.58550 -18.08705 -17.93575 -17.05712 -16.56233 -16.28121 -16.02460 -15.40050 -15.18592 -15.02241 -14.53664 -14.46970 -14.06440 -13.76150 -13.65209 -13.49693 -13.36466 -13.20390 -13.03732 -12.79365 -12.72652 -12.32699 -12.15609 -11.89482 -11.77615 -11.46630 -11.25876 -11.14917 -11.04764 -10.94907 -10.71085 -10.35669 -10.23390 -10.07242 -9.92184 -9.82451 -9.75927 -9.60464 -9.08246 -8.88919 -8.49150 -6.82045 -5.89540 -3.34832 1.10127 1.71208 2.32897 2.61519 3.21330 3.29771 3.37472 3.38243 3.90655 4.00775 4.08705 4.39220 4.59567 4.62506 4.81688 4.89286 5.00304 5.11860 5.21678 5.24227 5.29560 5.38567 5.46339 5.48487 5.51563 5.54192 5.63597 5.64150 5.79190 5.81491 5.89092 5.90480 5.95561 6.09782 6.18418 6.28370 6.40615 6.49475 6.64526 6.68480 6.75898 7.29559 7.42668 7.57828 7.71243 8.01636 8.07887 8.13874 8.33445 9.11302 9.75886 10.21709 11.17919 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015231 B = 0.002907 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.904923 B = 9629.656382 C =10510.648197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.048 4.048 3 C 0.022 3.978 4 O 0.096 5.904 5 N -0.358 5.358 6 C 0.055 3.945 7 C -0.079 4.079 8 C -0.248 4.248 9 C 0.597 3.403 10 O -0.530 6.530 11 N -0.705 5.705 12 C 0.131 3.869 13 C 0.067 3.933 14 H 0.052 0.948 15 C 0.128 3.872 16 N -0.591 5.591 17 C -0.267 4.267 18 H 0.067 0.933 19 C 0.008 3.992 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.177 3.823 26 C -0.176 4.176 27 C 0.088 3.912 28 O -0.396 6.396 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.405 0.595 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.255 0.745 43 H 0.075 0.925 44 H 0.027 0.973 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.630 -4.267 -17.469 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.086 4.086 3 C -0.041 4.041 4 O 0.034 5.966 5 N -0.065 5.065 6 C -0.107 4.107 7 C -0.137 4.137 8 C -0.255 4.255 9 C 0.380 3.620 10 O -0.407 6.407 11 N -0.355 5.355 12 C 0.008 3.992 13 C 0.005 3.995 14 H 0.070 0.930 15 C -0.001 4.001 16 N -0.312 5.312 17 C -0.397 4.397 18 H 0.084 0.916 19 C -0.191 4.191 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C 0.052 3.948 26 C -0.216 4.216 27 C 0.012 3.988 28 O -0.315 6.315 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.239 0.761 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.046 0.954 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.467 -4.002 -18.013 19.906 hybrid contribution -0.859 1.100 0.995 1.714 sum 6.608 -2.901 -17.019 18.486 Atomic orbital electron populations 1.21801 0.92538 1.03378 1.03144 1.20282 0.97309 0.85722 1.05275 1.24693 0.98042 0.96300 0.85096 1.84520 1.61650 1.17409 1.32990 1.73607 1.17533 0.98712 1.16605 1.24762 1.00351 0.96593 0.89008 1.20248 1.02360 0.91277 0.99787 1.21962 1.12744 0.95486 0.95299 1.16855 0.82969 0.78284 0.83866 1.90830 1.38896 1.43604 1.67389 1.45975 1.14259 1.63048 1.12251 1.21526 0.96312 1.01753 0.79629 1.22635 0.86282 0.94185 0.96447 0.93004 1.21400 0.90180 0.97697 0.90849 1.43835 1.03447 1.11451 1.72489 1.19224 1.16959 0.85368 1.18128 0.91553 1.25044 1.00619 0.97531 0.95936 1.70065 1.28245 1.31470 1.24738 0.86297 0.78372 0.84956 0.77172 1.21396 1.21659 1.20375 1.21002 0.89754 0.92801 0.91261 1.22768 1.00307 1.00072 0.98405 1.22013 0.79993 1.00362 0.96389 1.86062 1.15716 1.61557 1.68172 0.90779 0.91501 0.91941 0.88181 0.88748 0.89470 0.89605 0.89936 0.76083 0.90602 0.89905 0.93753 0.92580 0.93517 0.90625 0.95441 0.92105 0.92357 0.92056 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.15 0.37 -0.71 16 2 C -0.05 -0.37 6.38 -27.88 -0.18 -0.55 16 3 C 0.02 0.24 6.80 -34.62 -0.24 0.00 16 4 O 0.10 1.10 11.06 18.66 0.21 1.31 16 5 N -0.36 -4.50 12.01 34.78 0.42 -4.08 16 6 C 0.06 0.66 7.59 -79.77 -0.61 0.05 16 7 C -0.08 -0.74 10.49 36.00 0.38 -0.36 16 8 C -0.25 -3.05 6.24 -102.89 -0.64 -3.69 16 9 C 0.60 8.22 7.61 -12.53 -0.10 8.12 16 10 O -0.53 -9.09 17.11 5.27 0.09 -9.00 16 11 N -0.70 -8.95 5.49 -61.39 -0.34 -9.29 16 12 C 0.13 1.85 5.34 -4.04 -0.02 1.83 16 13 C 0.07 1.08 2.68 -25.78 -0.07 1.01 16 14 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 15 C 0.13 2.50 5.12 -3.83 -0.02 2.48 16 16 N -0.59 -13.74 2.23 -172.02 -0.38 -14.12 16 17 C -0.27 -6.87 9.46 -15.06 -0.14 -7.02 16 18 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 19 C 0.01 0.21 4.89 -17.43 -0.09 0.12 16 20 N -0.90 -25.05 11.00 55.49 0.61 -24.44 16 21 Si 0.90 20.84 29.58 -169.99 -5.03 15.81 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 C 0.18 3.99 4.70 -3.19 -0.02 3.97 16 26 C -0.18 -3.14 5.78 -27.18 -0.16 -3.29 16 27 C 0.09 1.46 6.37 36.42 0.23 1.69 16 28 O -0.40 -6.44 9.38 -26.53 -0.25 -6.69 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 32 H 0.10 0.83 8.11 -51.93 -0.42 0.41 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.40 4.67 8.44 -40.82 -0.34 4.32 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.04 0.86 8.11 -51.93 -0.42 0.43 16 41 H 0.06 1.09 7.98 -51.93 -0.41 0.68 16 42 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.08 1.90 6.37 -51.93 -0.33 1.57 16 44 H 0.03 0.68 8.04 -51.93 -0.42 0.27 16 45 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 46 H 0.06 1.03 8.01 -51.93 -0.42 0.62 16 47 H 0.06 1.14 7.40 -51.93 -0.38 0.76 16 48 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 394.89 15.07 5.95 5.95 Total: -1.00 -30.60 394.89 -7.78 -38.39 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.77 Total: 2.52 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.29 Total: 3.66 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.31 Total: -51.94 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.05 Total: -14.38 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.60 -7.78 -38.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073886474.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.341 kcal (2) G-P(sol) polarization free energy of solvation -30.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds