Wall clock time and date at job start Tue Mar 31 2020 21:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50709 * 109.46883 * 2 1 4 4 O 1.33491 * 126.83108 * 270.02337 * 3 2 1 5 5 N 1.20653 * 113.15577 * 180.02562 * 4 3 2 6 6 C 1.30012 * 112.30613 * 359.97438 * 5 4 3 7 7 C 1.50691 * 127.33899 * 180.02562 * 6 5 4 8 8 C 1.37360 * 126.82514 * 89.71120 * 3 2 1 9 9 C 1.47396 * 128.56761 * 359.96442 * 8 3 2 10 10 O 1.21612 * 120.00182 * 89.99500 * 9 8 3 11 11 N 1.34780 * 119.99621 * 269.99995 * 9 8 3 12 12 C 1.46500 * 119.99604 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47020 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.46941 * 304.99949 * 13 12 11 15 15 C 1.54807 * 109.47048 * 185.00746 * 13 12 11 16 16 N 1.45118 * 109.53723 * 172.11029 * 15 13 12 17 17 C 1.36942 * 118.76024 * 269.28986 * 16 15 13 18 18 H 1.08000 * 119.99526 * 26.09602 * 17 16 15 19 19 C 1.38808 * 120.00190 * 206.09760 * 17 16 15 20 20 N 1.31617 * 120.00100 * 15.46550 * 19 17 16 21 21 Si 1.86800 * 119.99960 * 195.46394 * 19 17 16 22 22 H 1.48505 * 109.47068 * 89.99990 * 21 19 17 23 23 H 1.48498 * 109.47417 * 209.99864 * 21 19 17 24 24 H 1.48498 * 109.47481 * 330.00490 * 21 19 17 25 25 C 1.47513 * 122.48555 * 89.29177 * 16 15 13 26 26 C 1.53572 * 111.02339 * 318.37255 * 25 16 15 27 27 C 1.51534 * 109.58217 * 320.01726 * 26 25 16 28 28 O 1.38013 * 109.46782 * 65.00012 * 13 12 11 29 29 H 1.08995 * 109.47294 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47424 * 299.99884 * 1 2 3 31 31 H 1.09009 * 109.47457 * 60.00083 * 1 2 3 32 32 H 1.08997 * 109.47067 * 120.00031 * 2 1 3 33 33 H 1.08996 * 109.47522 * 240.00455 * 2 1 3 34 34 H 1.08995 * 109.47687 * 89.97811 * 7 6 5 35 35 H 1.09006 * 109.47238 * 209.97669 * 7 6 5 36 36 H 1.09007 * 109.47103 * 329.97309 * 7 6 5 37 37 H 0.96996 * 120.00189 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.47165 * 299.99655 * 12 11 9 39 39 H 1.08998 * 109.47704 * 59.99993 * 12 11 9 40 40 H 1.08994 * 109.45911 * 292.12983 * 15 13 12 41 41 H 1.09004 * 109.45727 * 52.09137 * 15 13 12 42 42 H 0.96999 * 120.00144 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.16286 * 197.97331 * 25 16 15 44 44 H 1.08994 * 109.12485 * 78.74099 * 25 16 15 45 45 H 1.09009 * 109.45034 * 199.99044 * 26 25 16 46 46 H 1.08992 * 109.45696 * 80.05724 * 26 25 16 47 47 H 1.08997 * 109.59404 * 331.62055 * 27 26 25 48 48 H 1.09001 * 109.59428 * 211.18568 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2985 2.1755 -1.0685 5 7 2.6898 3.2806 -0.7832 6 6 2.7552 3.4644 0.5022 7 6 3.1960 4.7105 1.2260 8 6 2.3014 2.1990 1.0995 9 6 2.1701 1.8512 2.5258 10 8 3.1086 1.3561 3.1199 11 7 1.0097 2.0817 3.1715 12 6 0.8793 1.7365 4.5893 13 6 -0.5257 2.0981 5.0751 14 1 -0.7241 3.1488 4.8636 15 6 -0.6238 1.8515 6.6003 16 7 -1.8872 2.3662 7.0949 17 6 -1.9431 3.6605 7.5385 18 1 -1.2469 4.3926 7.1567 19 6 -2.8943 4.0316 8.4788 20 7 -3.5340 3.1098 9.1669 21 14 -3.2667 5.8391 8.7677 22 1 -4.3583 6.2712 7.8583 23 1 -3.6889 6.0385 10.1774 24 1 -2.0490 6.6448 8.4970 25 6 -3.1138 1.5478 7.1379 26 6 -3.2583 0.7043 5.8627 27 6 -2.8397 1.5259 4.6602 28 8 -1.4544 1.3139 4.4215 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 2.3335 5.3537 1.4006 35 1 3.6441 4.4365 2.1812 36 1 3.9294 5.2425 0.6200 37 1 0.2612 2.4769 2.6977 38 1 1.0452 0.6671 4.7196 39 1 1.6175 2.2919 5.1679 40 1 -0.5645 0.7816 6.7996 41 1 0.1979 2.3606 7.1040 42 1 -4.1985 3.3690 9.8243 43 1 -3.9788 2.2042 7.2329 44 1 -3.0708 0.8852 8.0023 45 1 -4.2974 0.3956 5.7475 46 1 -2.6239 -0.1788 5.9377 47 1 -3.0188 2.5825 4.8592 48 1 -3.4129 1.2141 3.7871 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073886474.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:30 Heat of formation + Delta-G solvation = -24.715156 kcal Electronic energy + Delta-G solvation = -30267.738203 eV Core-core repulsion = 26132.901261 eV Total energy + Delta-G solvation = -4134.836942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.95695 -40.97968 -40.15712 -37.00171 -35.98235 -35.83571 -35.58069 -33.63687 -33.40251 -31.43879 -30.20138 -29.73559 -27.50479 -27.10059 -25.74344 -24.66105 -24.02146 -22.31516 -21.90540 -21.32386 -20.80753 -19.10467 -18.86764 -18.81348 -17.65694 -17.50282 -17.36620 -16.79725 -16.51110 -16.24469 -15.93365 -15.52599 -15.38206 -15.10190 -14.74731 -14.46631 -14.37330 -14.31291 -14.19362 -13.89061 -13.72426 -13.61061 -13.44570 -13.11986 -13.00337 -12.78935 -12.53830 -12.50420 -12.48333 -12.40655 -12.06685 -11.85018 -11.76236 -11.50195 -11.40692 -11.30661 -10.97271 -10.53349 -10.48883 -10.27478 -10.21214 -8.72345 -7.89291 -5.36506 0.24466 0.81007 1.25900 1.45716 1.47522 1.55509 1.72697 2.20231 2.49490 2.75802 3.06717 3.19060 3.26116 3.56832 3.69306 3.85146 4.05153 4.12537 4.14769 4.22934 4.24634 4.29720 4.37454 4.48011 4.54125 4.55615 4.59056 4.65806 4.68852 4.75896 4.79506 4.84413 4.92443 4.99584 5.04738 5.07227 5.15668 5.19992 5.24087 5.29786 5.35122 5.48222 5.62108 5.76470 6.35110 6.37669 6.74713 7.01519 7.14665 7.14741 7.87129 8.27742 9.16264 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015231 B = 0.002907 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.904923 B = 9629.656382 C =10510.648197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C 0.039 3.961 4 O 0.094 5.906 5 N -0.375 5.375 6 C 0.051 3.949 7 C -0.080 4.080 8 C -0.273 4.273 9 C 0.607 3.393 10 O -0.567 6.567 11 N -0.694 5.694 12 C 0.142 3.858 13 C 0.087 3.913 14 H 0.045 0.955 15 C 0.123 3.877 16 N -0.605 5.605 17 C -0.269 4.269 18 H 0.069 0.931 19 C -0.045 4.045 20 N -0.934 5.934 21 Si 0.963 3.037 22 H -0.284 1.284 23 H -0.298 1.298 24 H -0.269 1.269 25 C 0.185 3.815 26 C -0.164 4.164 27 C 0.092 3.908 28 O -0.389 6.389 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.413 0.587 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.249 0.751 43 H 0.045 0.955 44 H -0.007 1.007 45 H 0.083 0.917 46 H 0.062 0.938 47 H 0.038 0.962 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.758 -4.406 -19.735 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.025 4.025 4 O 0.034 5.966 5 N -0.084 5.084 6 C -0.111 4.111 7 C -0.137 4.137 8 C -0.280 4.280 9 C 0.392 3.608 10 O -0.446 6.446 11 N -0.344 5.344 12 C 0.018 3.982 13 C 0.025 3.975 14 H 0.062 0.938 15 C -0.005 4.005 16 N -0.327 5.327 17 C -0.399 4.399 18 H 0.086 0.914 19 C -0.240 4.240 20 N -0.580 5.580 21 Si 0.791 3.209 22 H -0.211 1.211 23 H -0.225 1.225 24 H -0.194 1.194 25 C 0.060 3.940 26 C -0.203 4.203 27 C 0.016 3.984 28 O -0.308 6.308 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.249 0.751 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.011 0.989 45 H 0.102 0.898 46 H 0.081 0.919 47 H 0.057 0.943 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.601 -4.143 -20.327 22.093 hybrid contribution -0.869 1.082 1.691 2.187 sum 6.732 -3.061 -18.636 20.050 Atomic orbital electron populations 1.21787 0.91727 1.04287 1.02692 1.20472 0.97826 0.83994 1.06316 1.25195 0.96088 0.96910 0.84325 1.84505 1.61597 1.17303 1.33148 1.73599 1.18560 0.99315 1.16896 1.25156 0.99745 0.97206 0.88971 1.20355 1.03191 0.90662 0.99536 1.21858 1.14959 0.96462 0.94769 1.16908 0.82362 0.77314 0.84245 1.90812 1.40072 1.45366 1.68346 1.45811 1.14412 1.62587 1.11588 1.21316 0.94718 1.01740 0.80462 1.22281 0.87477 0.93866 0.93885 0.93752 1.21567 0.88501 0.97494 0.92949 1.44034 1.04878 1.10995 1.72838 1.19519 1.16417 0.86595 1.17343 0.91367 1.25741 1.01064 1.00995 0.96239 1.70224 1.29047 1.33077 1.25628 0.85340 0.78313 0.80855 0.76374 1.21100 1.22465 1.19375 1.20777 0.88564 0.91960 0.92698 1.22618 1.02004 0.99270 0.96370 1.22061 0.80316 0.98773 0.97221 1.86096 1.15706 1.61369 1.67670 0.89211 0.92944 0.91360 0.88628 0.86200 0.88146 0.89910 0.88774 0.75118 0.90632 0.89744 0.93659 0.92981 0.94155 0.93666 0.98908 0.89824 0.91907 0.94319 0.87374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.89 71.98 0.71 -1.00 16 2 C -0.05 -0.63 6.38 29.85 0.19 -0.44 16 3 C 0.04 0.75 6.80 25.48 0.17 0.93 16 4 O 0.09 2.01 11.06 77.01 0.85 2.86 16 5 N -0.38 -8.95 12.01 -44.78 -0.54 -9.49 16 6 C 0.05 1.17 7.59 45.16 0.34 1.51 16 7 C -0.08 -1.39 10.49 71.23 0.75 -0.64 16 8 C -0.27 -6.36 6.24 -18.74 -0.12 -6.48 16 9 C 0.61 16.00 7.61 86.65 0.66 16.66 16 10 O -0.57 -19.01 17.11 -4.07 -0.07 -19.08 16 11 N -0.69 -16.50 5.49 -466.39 -2.56 -19.06 16 12 C 0.14 3.79 5.34 86.38 0.46 4.25 16 13 C 0.09 2.70 2.68 31.21 0.08 2.78 16 14 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 15 C 0.12 4.75 5.12 87.25 0.45 5.19 16 16 N -0.61 -28.42 2.23 -698.16 -1.55 -29.98 16 17 C -0.27 -13.93 9.46 84.03 0.80 -13.13 16 18 H 0.07 3.45 7.88 -2.91 -0.02 3.42 16 19 C -0.04 -2.39 4.89 84.86 0.41 -1.98 16 20 N -0.93 -53.47 11.00 21.65 0.24 -53.23 16 21 Si 0.96 43.28 29.58 68.60 2.03 45.31 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 C 0.18 8.50 4.70 86.38 0.41 8.91 16 26 C -0.16 -5.59 5.78 30.31 0.18 -5.41 16 27 C 0.09 2.82 6.37 71.50 0.46 3.28 16 28 O -0.39 -11.76 9.38 -117.84 -1.11 -12.87 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.10 1.40 8.11 -2.39 -0.02 1.38 16 33 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.41 8.68 8.44 -92.71 -0.78 7.90 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.05 1.73 8.11 -2.39 -0.02 1.71 16 41 H 0.05 2.03 7.98 -2.39 -0.02 2.01 16 42 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 43 H 0.04 2.33 6.37 -2.39 -0.02 2.32 16 44 H -0.01 -0.37 8.04 -2.39 -0.02 -0.39 16 45 H 0.08 2.48 8.14 -2.38 -0.02 2.47 16 46 H 0.06 2.11 8.01 -2.39 -0.02 2.09 16 47 H 0.04 1.38 7.40 -2.39 -0.02 1.37 16 48 H 0.11 2.56 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -66.95 394.89 3.42 -63.53 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.18 Total: 17.57 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 5.95 Total: 14.43 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -4.41 Total: -111.76 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.32 Total: -29.08 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -66.95 3.42 -63.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073886474.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.816 kcal (2) G-P(sol) polarization free energy of solvation -66.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds