Wall clock time and date at job start Tue Mar 31 2020 20:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33698 * 126.26662 * 2 1 4 4 C 1.30621 * 108.98583 * 180.25817 * 3 2 1 5 5 C 1.50710 * 125.41876 * 179.74494 * 4 3 2 6 6 C 1.53001 * 109.47060 * 300.02522 * 5 4 3 7 7 C 1.52998 * 109.46682 * 60.02125 * 5 4 3 8 8 O 1.33658 * 109.16113 * 359.76442 * 4 3 2 9 9 C 1.35352 * 107.68414 * 0.02562 * 8 4 3 10 10 C 1.46713 * 126.64306 * 179.97438 * 9 8 4 11 11 O 1.21691 * 119.99528 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00283 * 0.02562 * 10 9 8 13 13 C 1.46507 * 119.99780 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.46177 * 34.97940 * 13 12 10 15 15 C 1.53039 * 109.46029 * 275.00311 * 13 12 10 16 16 C 1.53194 * 109.31275 * 178.63070 * 15 13 12 17 17 N 1.46934 * 108.77480 * 54.63368 * 16 15 13 18 18 C 1.36939 * 120.62884 * 126.11394 * 17 16 15 19 19 H 1.07992 * 120.00044 * 332.70780 * 18 17 16 20 20 C 1.38807 * 119.99712 * 152.70003 * 18 17 16 21 21 N 1.31624 * 120.00086 * 159.47722 * 20 18 17 22 22 Si 1.86803 * 120.00386 * 339.48000 * 20 18 17 23 23 H 1.48500 * 109.47214 * 93.00133 * 22 20 18 24 24 H 1.48499 * 109.47277 * 213.00605 * 22 20 18 25 25 H 1.48503 * 109.46657 * 333.00776 * 22 20 18 26 26 C 1.46924 * 118.73496 * 306.39588 * 17 16 15 27 27 C 1.53040 * 109.44366 * 154.94578 * 13 12 10 28 28 H 1.08997 * 109.50336 * 61.39576 * 27 13 12 29 29 O 1.42904 * 109.49839 * 301.32509 * 27 13 12 30 30 H 1.09007 * 109.47229 * 270.13329 * 1 2 3 31 31 H 1.08997 * 109.47519 * 30.13346 * 1 2 3 32 32 H 1.09001 * 109.47054 * 150.13809 * 1 2 3 33 33 H 1.08997 * 109.47006 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.46740 * 179.97438 * 6 5 4 35 35 H 1.09007 * 109.47069 * 300.00053 * 6 5 4 36 36 H 1.08997 * 109.47164 * 59.99521 * 6 5 4 37 37 H 1.09005 * 109.47363 * 60.00618 * 7 5 4 38 38 H 1.09009 * 109.46685 * 179.97438 * 7 5 4 39 39 H 1.08997 * 109.47592 * 299.99876 * 7 5 4 40 40 H 0.96998 * 119.99923 * 0.02562 * 12 10 9 41 41 H 1.08995 * 109.50155 * 58.67949 * 15 13 12 42 42 H 1.09004 * 109.49604 * 298.57960 * 15 13 12 43 43 H 1.08997 * 109.58226 * 294.84905 * 16 15 13 44 44 H 1.09000 * 109.70496 * 174.49130 * 16 15 13 45 45 H 0.96994 * 120.00377 * 180.02562 * 21 20 18 46 46 H 1.09007 * 109.58128 * 173.39637 * 26 17 16 47 47 H 1.08999 * 109.58395 * 293.81316 * 26 17 16 48 48 H 0.96692 * 113.99947 * 180.02562 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0780 0.0000 4 6 3.5451 0.6900 -0.0056 5 6 4.7439 1.6033 -0.0130 6 6 4.7060 2.4845 -1.2631 7 6 4.7189 2.4876 1.2353 8 8 3.5890 -0.6459 -0.0041 9 6 2.3136 -1.0992 0.0021 10 6 1.8828 -2.5016 0.0052 11 8 0.6967 -2.7736 0.0104 12 7 2.8005 -3.4886 0.0024 13 6 2.3702 -4.8890 0.0060 14 1 1.4560 -4.9895 -0.5789 15 6 2.1065 -5.3376 1.4453 16 6 1.6240 -6.7915 1.4424 17 7 2.6068 -7.6145 0.7242 18 6 3.1498 -8.7253 1.3129 19 1 3.2307 -8.7816 2.3883 20 6 3.5962 -9.7790 0.5272 21 7 4.4609 -10.6432 1.0148 22 14 2.9699 -9.9704 -1.2222 23 1 3.8994 -9.2884 -2.1582 24 1 2.8922 -11.4132 -1.5651 25 1 1.6199 -9.3617 -1.3340 26 6 3.0003 -7.2195 -0.6351 27 6 3.4674 -5.7608 -0.6089 28 1 4.3748 -5.6795 -0.0105 29 8 3.7344 -5.3215 -1.9423 30 1 -0.3634 0.0024 1.0277 31 1 -0.3634 0.8887 -0.5159 32 1 -0.3633 -0.8912 -0.5117 33 1 5.6557 1.0060 -0.0170 34 1 5.5728 3.1453 -1.2682 35 1 4.7237 1.8544 -2.1525 36 1 3.7942 3.0817 -1.2591 37 1 4.7460 1.8598 2.1260 38 1 5.5863 3.1479 1.2302 39 1 3.8072 3.0849 1.2393 40 1 3.7459 -3.2717 -0.0014 41 1 1.3416 -4.7013 1.8904 42 1 3.0266 -5.2607 2.0246 43 1 0.6582 -6.8550 0.9412 44 1 1.5278 -7.1488 2.4677 45 1 4.7732 -11.3793 0.4657 46 1 3.8140 -7.8576 -0.9798 47 1 2.1467 -7.3180 -1.3057 48 1 4.4210 -5.8308 -2.3940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090639628.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:53 Heat of formation + Delta-G solvation = -75.696271 kcal Electronic energy + Delta-G solvation = -30033.864604 eV Core-core repulsion = 25896.816955 eV Total energy + Delta-G solvation = -4137.047649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.60963 -41.20688 -39.62699 -37.08531 -36.94687 -36.44492 -35.80135 -34.14154 -32.37932 -31.73274 -30.78445 -28.97803 -28.11598 -26.97003 -25.38085 -24.64649 -23.61715 -22.79252 -21.84955 -21.39498 -21.37228 -19.51585 -18.74365 -18.34896 -18.10926 -17.82782 -17.28475 -16.81748 -16.15544 -15.98701 -15.83918 -15.62106 -15.23326 -15.13521 -15.06661 -14.66505 -14.34904 -14.34262 -14.14791 -14.07955 -14.00100 -13.72444 -13.35527 -13.11318 -13.09194 -12.73962 -12.73333 -12.54245 -12.39040 -12.33219 -12.21248 -12.05403 -11.99468 -11.82745 -11.75174 -11.49747 -11.28248 -11.14947 -10.71741 -10.37933 -9.88799 -9.04181 -8.19892 -5.54184 -0.35630 1.20117 1.24287 1.25125 1.41558 1.49240 1.88821 1.94679 2.37004 2.73819 2.85113 3.10057 3.29558 3.52543 3.56129 3.71644 3.91043 3.93874 4.01498 4.02070 4.07485 4.20412 4.30552 4.35902 4.40922 4.49009 4.64393 4.65035 4.71101 4.75146 4.78487 4.79115 4.84806 4.87694 4.89267 4.91381 4.98926 5.05986 5.16913 5.24707 5.29128 5.29991 5.37736 5.80738 6.09515 6.18718 6.48294 6.67314 6.84960 6.87474 7.54397 7.93945 8.99357 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.020292 B = 0.002637 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.554369 B =10616.834829 C =11037.335353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.077 3.923 3 N -0.499 5.499 4 C 0.232 3.768 5 C -0.003 4.003 6 C -0.140 4.140 7 C -0.140 4.140 8 O -0.191 6.191 9 C -0.139 4.139 10 C 0.610 3.390 11 O -0.541 6.541 12 N -0.694 5.694 13 C 0.168 3.832 14 H 0.078 0.922 15 C -0.128 4.128 16 C 0.145 3.855 17 N -0.614 5.614 18 C -0.251 4.251 19 H 0.060 0.940 20 C -0.029 4.029 21 N -0.951 5.951 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.311 1.311 25 H -0.268 1.268 26 C 0.098 3.902 27 C 0.096 3.904 28 H 0.069 0.931 29 O -0.571 6.571 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.412 0.588 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.036 0.964 44 H 0.070 0.930 45 H 0.263 0.737 46 H 0.066 0.934 47 H 0.035 0.965 48 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 27.934 -3.911 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.047 4.047 3 N -0.229 5.229 4 C 0.027 3.973 5 C -0.022 4.022 6 C -0.198 4.198 7 C -0.198 4.198 8 O -0.079 6.079 9 C -0.194 4.194 10 C 0.396 3.604 11 O -0.420 6.420 12 N -0.343 5.343 13 C 0.063 3.937 14 H 0.096 0.904 15 C -0.168 4.168 16 C 0.020 3.980 17 N -0.340 5.340 18 C -0.380 4.380 19 H 0.077 0.923 20 C -0.225 4.225 21 N -0.597 5.597 22 Si 0.769 3.231 23 H -0.193 1.193 24 H -0.240 1.240 25 H -0.193 1.193 26 C -0.028 4.028 27 C 0.035 3.965 28 H 0.087 0.913 29 O -0.378 6.378 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.079 0.921 40 H 0.248 0.752 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.054 0.946 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.053 0.947 48 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 0.089 28.604 -3.786 28.854 hybrid contribution 0.832 -2.029 -0.780 2.328 sum 0.921 26.575 -4.567 26.980 Atomic orbital electron populations 1.20411 0.84261 1.04482 1.04303 1.22438 0.99240 0.86462 0.96551 1.70327 1.00861 1.30722 1.20980 1.27586 0.96572 0.78975 0.94171 1.20156 0.89413 0.93001 0.99661 1.21855 1.04285 0.99272 0.94384 1.21855 1.04269 0.99253 0.94413 1.84452 1.29234 1.24454 1.69726 1.22712 0.81985 0.95863 1.18856 1.16398 0.85599 0.81775 0.76609 1.90837 1.16565 1.82331 1.52315 1.45770 1.10076 1.05385 1.73035 1.20846 0.97364 0.78622 0.96840 0.90382 1.22268 1.02397 0.97270 0.94887 1.21094 0.90806 0.89084 0.97046 1.44420 1.47455 1.28152 1.13928 1.18866 1.33365 0.93490 0.92282 0.92263 1.25863 0.98699 0.96142 1.01752 1.69946 1.32312 1.18122 1.39318 0.86026 0.79869 0.75428 0.81791 1.19304 1.24008 1.19254 1.22055 0.98650 0.94749 0.87319 1.22422 0.97299 0.92900 0.83892 0.91270 1.86429 1.62997 1.61119 1.27217 0.89128 0.88993 0.89749 0.86171 0.88004 0.92758 0.92134 0.92712 0.88023 0.92127 0.75237 0.90078 0.91148 0.94643 0.91140 0.92777 0.91563 0.94667 0.75528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 9.87 71.24 0.70 -0.98 16 2 C 0.08 1.99 7.16 41.83 0.30 2.28 16 3 N -0.50 -11.83 11.26 -291.05 -3.28 -15.11 16 4 C 0.23 4.74 6.82 88.29 0.60 5.35 16 5 C 0.00 -0.03 3.39 -11.54 -0.04 -0.07 16 6 C -0.14 -1.30 9.18 71.98 0.66 -0.64 16 7 C -0.14 -1.29 9.17 71.98 0.66 -0.63 16 8 O -0.19 -4.56 10.57 -7.12 -0.08 -4.64 16 9 C -0.14 -3.79 7.18 24.04 0.17 -3.62 16 10 C 0.61 18.30 7.75 86.46 0.67 18.97 16 11 O -0.54 -18.51 14.46 -4.32 -0.06 -18.57 16 12 N -0.69 -19.46 4.91 -446.33 -2.19 -21.65 16 13 C 0.17 5.33 2.12 45.02 0.10 5.42 16 14 H 0.08 2.78 7.57 -2.39 -0.02 2.76 16 15 C -0.13 -4.09 5.65 30.67 0.17 -3.91 16 16 C 0.14 5.47 6.52 86.36 0.56 6.03 16 17 N -0.61 -27.67 2.77 -699.09 -1.93 -29.60 16 18 C -0.25 -13.63 10.03 84.03 0.84 -12.79 16 19 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 20 C -0.03 -1.64 5.23 84.86 0.44 -1.20 16 21 N -0.95 -57.78 13.97 21.65 0.30 -57.48 16 22 Si 0.94 44.84 24.35 68.60 1.67 46.51 16 23 H -0.27 -11.61 6.63 99.48 0.66 -10.95 16 24 H -0.31 -15.28 7.11 99.48 0.71 -14.57 16 25 H -0.27 -12.58 6.63 99.48 0.66 -11.92 16 26 C 0.10 3.96 3.83 86.36 0.33 4.29 16 27 C 0.10 3.12 3.14 30.67 0.10 3.22 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 O -0.57 -16.40 13.16 -148.98 -1.96 -18.36 16 30 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 2.05 6.47 -2.39 -0.02 2.03 16 33 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 37 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.41 10.13 8.40 -92.71 -0.78 9.35 16 41 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 45 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 46 H 0.07 2.84 4.49 -2.38 -0.01 2.83 16 47 H 0.04 1.45 7.09 -2.39 -0.02 1.43 16 48 H 0.39 8.49 9.08 -74.06 -0.67 7.81 16 Total: -1.00 -70.33 386.11 -1.81 -72.14 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.55 Total: 25.02 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 6.28 Total: 21.73 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -7.10 Total: -123.84 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -2.10 Total: -41.57 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.67 Total: 46.51 kcal Total: -70.33 -1.81 -72.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090639628.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.556 kcal (2) G-P(sol) polarization free energy of solvation -70.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds