Wall clock time and date at job start Tue Mar 31 2020 20:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30122 * 126.70428 * 2 1 4 4 O 1.20888 * 111.98062 * 180.02562 * 3 2 1 5 5 C 1.34643 * 111.46917 * 0.02562 * 4 3 2 6 6 C 1.47510 * 126.94442 * 179.97438 * 5 4 3 7 7 O 1.21577 * 119.99967 * 185.53310 * 6 5 4 8 8 N 1.34784 * 119.99943 * 5.53027 * 6 5 4 9 9 C 1.46923 * 120.62626 * 173.68425 * 8 6 5 10 10 C 1.53194 * 108.89028 * 233.67885 * 9 8 6 11 11 C 1.53037 * 109.31392 * 305.29481 * 10 9 8 12 12 N 1.46504 * 109.45793 * 181.38548 * 11 10 9 13 13 C 1.36943 * 119.99845 * 299.99960 * 12 11 10 14 14 H 1.07989 * 120.00510 * 318.56499 * 13 12 11 15 15 C 1.38813 * 119.99556 * 138.56448 * 13 12 11 16 16 N 1.31618 * 119.99991 * 342.55445 * 15 13 12 17 17 Si 1.86794 * 120.00113 * 162.55032 * 15 13 12 18 18 H 1.48499 * 109.47218 * 89.99784 * 17 15 13 19 19 H 1.48501 * 109.47448 * 209.99986 * 17 15 13 20 20 H 1.48507 * 109.46893 * 330.00153 * 17 15 13 21 21 C 1.46497 * 119.99772 * 120.00580 * 12 11 10 22 22 C 1.52997 * 109.47378 * 84.35368 * 21 12 11 23 23 O 1.42899 * 109.47609 * 64.99903 * 22 21 12 24 24 C 1.53042 * 109.53717 * 61.36882 * 11 10 9 25 25 C 1.47204 * 120.81237 * 353.83106 * 8 6 5 26 26 C 1.36822 * 106.11142 * 0.23654 * 5 4 3 27 27 C 1.50697 * 128.07752 * 179.75368 * 26 5 4 28 28 H 1.09000 * 109.46825 * 89.97231 * 1 2 3 29 29 H 1.08994 * 109.47006 * 209.97525 * 1 2 3 30 30 H 1.09003 * 109.46991 * 329.97672 * 1 2 3 31 31 H 1.09006 * 109.58382 * 113.82465 * 9 8 6 32 32 H 1.08995 * 109.59140 * 353.54449 * 9 8 6 33 33 H 1.08999 * 109.49483 * 65.24894 * 10 9 8 34 34 H 1.09006 * 109.49479 * 185.31091 * 10 9 8 35 35 H 1.08991 * 109.46345 * 301.35998 * 11 10 9 36 36 H 0.97002 * 119.99882 * 180.02562 * 16 15 13 37 37 H 1.09010 * 109.46783 * 204.35116 * 21 12 11 38 38 H 1.08998 * 109.47544 * 324.34896 * 21 12 11 39 39 H 1.09003 * 109.47049 * 184.99672 * 22 21 12 40 40 H 1.09002 * 109.47102 * 304.99532 * 22 21 12 41 41 H 0.96693 * 114.00600 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.49901 * 58.58087 * 24 11 10 43 43 H 1.08995 * 109.49727 * 178.68194 * 24 11 10 44 44 H 1.09000 * 109.53755 * 6.53160 * 25 8 6 45 45 H 1.09006 * 109.67452 * 246.22428 * 25 8 6 46 46 H 1.09007 * 109.46560 * 90.00396 * 27 26 5 47 47 H 1.08996 * 109.47621 * 210.00256 * 27 26 5 48 48 H 1.08997 * 109.47321 * 330.01328 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2848 1.0432 0.0000 4 8 3.4540 0.7360 -0.0005 5 6 3.6121 -0.6011 -0.0015 6 6 4.8870 -1.3431 -0.0028 7 8 4.8852 -2.5546 -0.1051 8 7 6.0540 -0.6780 0.1093 9 6 7.3213 -1.4082 0.2483 10 6 8.0550 -0.8960 1.4917 11 6 8.2154 0.6229 1.3950 12 7 8.9460 1.1121 2.5669 13 6 8.4381 0.9121 3.8229 14 1 7.3818 1.0426 4.0054 15 6 9.2813 0.5416 4.8615 16 7 10.4745 0.0525 4.5979 17 14 8.7227 0.7374 6.6332 18 1 8.0386 -0.5038 7.0765 19 1 9.9024 0.9888 7.4994 20 1 7.7828 1.8829 6.7321 21 6 10.2196 1.8152 2.3951 22 6 9.9513 3.2943 2.1101 23 8 9.3384 3.8960 3.2522 24 6 6.8347 1.2811 1.3436 25 6 6.0871 0.7936 0.0985 26 6 2.3514 -1.1326 -0.0070 27 6 1.9557 -2.5867 -0.0153 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 7.9381 -1.2409 -0.6348 32 1 7.1192 -2.4738 0.3562 33 1 7.4785 -1.1450 2.3826 34 1 9.0381 -1.3630 1.5522 35 1 8.7704 0.8726 0.4909 36 1 11.0635 -0.2067 5.3237 37 1 10.8117 1.7222 3.3057 38 1 10.7665 1.3777 1.5599 39 1 10.8929 3.7994 1.8947 40 1 9.2861 3.3839 1.2512 41 1 9.1390 4.8357 3.1422 42 1 6.2697 1.0116 2.2359 43 1 6.9495 2.3640 1.2983 44 1 5.0685 1.1813 0.1087 45 1 6.6019 1.1425 -0.7968 46 1 1.8581 -2.9425 1.0104 47 1 1.0028 -2.7011 -0.5318 48 1 2.7203 -3.1683 -0.5302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098401221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:26 Heat of formation + Delta-G solvation = 9.004274 kcal Electronic energy + Delta-G solvation = -30829.388861 eV Core-core repulsion = 26696.014103 eV Total energy + Delta-G solvation = -4133.374758 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.10080 -39.94009 -37.70049 -36.27507 -35.54326 -34.59623 -32.93772 -31.96082 -30.74289 -30.37506 -29.02106 -28.41389 -27.62177 -25.19292 -23.75131 -23.12620 -22.23467 -21.83353 -20.61952 -20.02971 -19.14543 -17.90143 -17.48218 -16.63917 -16.43926 -16.03607 -15.99050 -14.93144 -14.82466 -14.42975 -14.16916 -13.82563 -13.78771 -13.75758 -13.44678 -13.34031 -13.22219 -13.15549 -12.89496 -12.81980 -12.55739 -12.52605 -12.08301 -11.82300 -11.46181 -11.22100 -11.18726 -10.91485 -10.75503 -10.64190 -10.49716 -10.21914 -10.06542 -9.98192 -9.84657 -9.82764 -9.54090 -9.46993 -9.09511 -8.50077 -8.35820 -6.44010 -5.70551 -3.29645 0.75292 1.90971 2.53720 2.98494 3.18217 3.43043 3.50039 3.55843 3.87976 4.21755 4.55027 4.56815 4.74063 4.93686 5.14501 5.19260 5.26247 5.27680 5.35915 5.41212 5.44984 5.47227 5.50536 5.55848 5.65176 5.71632 5.79396 5.83679 5.99409 6.02583 6.07552 6.10186 6.18551 6.26236 6.37988 6.43640 6.59969 6.69137 6.80782 6.82264 7.12136 7.22886 7.36288 7.64654 7.89911 7.92785 8.12387 8.47075 8.67324 9.27950 9.89226 10.47459 11.32276 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.003306 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.065528 B = 8467.471681 C = 8542.002650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.010 3.990 3 N -0.350 5.350 4 O 0.116 5.884 5 C -0.081 4.081 6 C 0.602 3.398 7 O -0.522 6.522 8 N -0.588 5.588 9 C 0.113 3.887 10 C -0.133 4.133 11 C 0.177 3.823 12 N -0.571 5.571 13 C -0.236 4.236 14 H 0.053 0.947 15 C 0.019 3.981 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.278 1.278 21 C 0.150 3.850 22 C 0.058 3.942 23 O -0.545 6.545 24 C -0.138 4.138 25 C 0.095 3.905 26 C -0.123 4.123 27 C -0.085 4.085 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.252 0.748 37 H 0.097 0.903 38 H 0.036 0.964 39 H 0.019 0.981 40 H 0.023 0.977 41 H 0.349 0.651 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.868 0.455 -12.448 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.148 4.148 3 N -0.055 5.055 4 O 0.048 5.952 5 C -0.147 4.147 6 C 0.387 3.613 7 O -0.399 6.399 8 N -0.319 5.319 9 C -0.009 4.009 10 C -0.173 4.173 11 C 0.069 3.931 12 N -0.289 5.289 13 C -0.366 4.366 14 H 0.071 0.929 15 C -0.180 4.180 16 N -0.537 5.537 17 Si 0.725 3.275 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.204 1.204 21 C 0.023 3.977 22 C -0.022 4.022 23 O -0.346 6.346 24 C -0.178 4.178 25 C -0.028 4.028 26 C -0.128 4.128 27 C -0.142 4.142 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.115 0.885 38 H 0.055 0.945 39 H 0.037 0.963 40 H 0.041 0.959 41 H 0.192 0.808 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.090 0.910 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.833 0.431 -12.137 17.669 hybrid contribution -0.242 0.229 0.793 0.860 sum -13.074 0.660 -11.344 17.322 Atomic orbital electron populations 1.20180 0.85497 1.04023 1.03443 1.23468 0.99087 0.88149 1.04115 1.73699 0.90051 1.24686 1.17043 1.85090 1.20465 1.22034 1.67626 1.24072 0.97071 0.83752 1.09758 1.16622 0.80929 0.85956 0.77786 1.90796 1.85615 1.12162 1.51357 1.48158 1.06310 1.07997 1.69470 1.21895 0.82520 0.97082 0.99393 1.22319 1.00441 0.98548 0.96026 1.20328 0.91048 0.91030 0.90691 1.43642 1.21932 1.62129 1.01242 1.18699 0.93158 1.39971 0.84775 0.92950 1.25158 0.97070 0.97350 0.98454 1.69957 1.09401 1.43490 1.30888 0.86443 0.77730 0.77856 0.85504 1.21664 1.21733 1.20364 1.20932 0.89387 0.85704 1.01685 1.23122 0.93455 0.98294 0.87377 1.86847 1.82989 1.25383 1.39348 1.22359 0.98690 1.00595 0.96178 1.22398 1.02420 0.78021 0.99988 1.21449 0.90299 0.98506 1.02568 1.20320 1.02462 0.88020 1.03381 0.90070 0.89845 0.90280 0.91562 0.89447 0.90913 0.90551 0.93482 0.93831 0.88513 0.94542 0.96300 0.95921 0.80773 0.91184 0.91152 0.88815 0.91037 0.90280 0.90968 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.39 36.01 0.37 -0.20 16 2 C 0.01 0.12 7.31 -82.16 -0.60 -0.48 16 3 N -0.35 -4.92 12.04 33.52 0.40 -4.52 16 4 O 0.12 1.67 7.76 15.55 0.12 1.79 16 5 C -0.08 -1.18 7.00 -36.32 -0.25 -1.43 16 6 C 0.60 9.51 7.69 -12.48 -0.10 9.41 16 7 O -0.52 -9.06 14.53 5.30 0.08 -8.98 16 8 N -0.59 -8.97 2.98 -173.78 -0.52 -9.49 16 9 C 0.11 1.74 6.40 -3.71 -0.02 1.71 16 10 C -0.13 -2.49 5.31 -26.61 -0.14 -2.63 16 11 C 0.18 3.36 2.59 -67.89 -0.18 3.18 16 12 N -0.57 -13.17 2.29 -165.62 -0.38 -13.55 16 13 C -0.24 -6.22 7.98 -15.06 -0.12 -6.34 16 14 H 0.05 1.43 6.92 -52.49 -0.36 1.07 16 15 C 0.02 0.53 4.96 -17.43 -0.09 0.44 16 16 N -0.89 -25.32 11.60 55.49 0.64 -24.68 16 17 Si 0.89 22.20 29.59 -169.99 -5.03 17.17 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.15 3.34 5.54 -4.05 -0.02 3.31 16 22 C 0.06 1.09 7.39 37.16 0.27 1.36 16 23 O -0.54 -11.07 13.40 -35.23 -0.47 -11.54 16 24 C -0.14 -2.37 5.30 -26.61 -0.14 -2.51 16 25 C 0.09 1.34 6.36 -3.56 -0.02 1.32 16 26 C -0.12 -1.56 6.36 -103.99 -0.66 -2.22 16 27 C -0.08 -0.86 9.91 36.00 0.36 -0.51 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.38 7.04 -51.93 -0.37 1.01 16 33 H 0.07 1.57 7.71 -51.93 -0.40 1.17 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.05 0.83 7.87 -51.93 -0.41 0.42 16 36 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.10 2.54 5.76 -51.92 -0.30 2.24 16 38 H 0.04 0.76 8.04 -51.93 -0.42 0.34 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.35 5.14 9.12 45.56 0.42 5.56 16 42 H 0.07 1.38 7.10 -51.93 -0.37 1.01 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.09 1.30 3.83 -54.61 -0.21 1.09 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.09 1.06 6.64 -51.93 -0.35 0.72 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -31.79 383.91 -7.26 -39.05 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.55 Total: 4.56 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -1.34 Total: 4.41 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.15 Total: -52.24 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.27 Total: -18.73 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.79 -7.26 -39.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098401221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.053 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds