Wall clock time and date at job start Tue Mar 31 2020 20:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30122 * 126.70428 * 2 1 4 4 O 1.20888 * 111.98062 * 180.02562 * 3 2 1 5 5 C 1.34643 * 111.46917 * 0.02562 * 4 3 2 6 6 C 1.47510 * 126.94442 * 179.97438 * 5 4 3 7 7 O 1.21577 * 119.99967 * 185.53310 * 6 5 4 8 8 N 1.34784 * 119.99943 * 5.53027 * 6 5 4 9 9 C 1.46923 * 120.62626 * 173.68425 * 8 6 5 10 10 C 1.53194 * 108.89028 * 233.67885 * 9 8 6 11 11 C 1.53037 * 109.31392 * 305.29481 * 10 9 8 12 12 N 1.46504 * 109.45793 * 181.38548 * 11 10 9 13 13 C 1.36943 * 119.99845 * 299.99960 * 12 11 10 14 14 H 1.07989 * 120.00510 * 318.56499 * 13 12 11 15 15 C 1.38813 * 119.99556 * 138.56448 * 13 12 11 16 16 N 1.31618 * 119.99991 * 342.55445 * 15 13 12 17 17 Si 1.86794 * 120.00113 * 162.55032 * 15 13 12 18 18 H 1.48499 * 109.47218 * 89.99784 * 17 15 13 19 19 H 1.48501 * 109.47448 * 209.99986 * 17 15 13 20 20 H 1.48507 * 109.46893 * 330.00153 * 17 15 13 21 21 C 1.46497 * 119.99772 * 120.00580 * 12 11 10 22 22 C 1.52997 * 109.47378 * 84.35368 * 21 12 11 23 23 O 1.42899 * 109.47609 * 64.99903 * 22 21 12 24 24 C 1.53042 * 109.53717 * 61.36882 * 11 10 9 25 25 C 1.47204 * 120.81237 * 353.83106 * 8 6 5 26 26 C 1.36822 * 106.11142 * 0.23654 * 5 4 3 27 27 C 1.50697 * 128.07752 * 179.75368 * 26 5 4 28 28 H 1.09000 * 109.46825 * 89.97231 * 1 2 3 29 29 H 1.08994 * 109.47006 * 209.97525 * 1 2 3 30 30 H 1.09003 * 109.46991 * 329.97672 * 1 2 3 31 31 H 1.09006 * 109.58382 * 113.82465 * 9 8 6 32 32 H 1.08995 * 109.59140 * 353.54449 * 9 8 6 33 33 H 1.08999 * 109.49483 * 65.24894 * 10 9 8 34 34 H 1.09006 * 109.49479 * 185.31091 * 10 9 8 35 35 H 1.08991 * 109.46345 * 301.35998 * 11 10 9 36 36 H 0.97002 * 119.99882 * 180.02562 * 16 15 13 37 37 H 1.09010 * 109.46783 * 204.35116 * 21 12 11 38 38 H 1.08998 * 109.47544 * 324.34896 * 21 12 11 39 39 H 1.09003 * 109.47049 * 184.99672 * 22 21 12 40 40 H 1.09002 * 109.47102 * 304.99532 * 22 21 12 41 41 H 0.96693 * 114.00600 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.49901 * 58.58087 * 24 11 10 43 43 H 1.08995 * 109.49727 * 178.68194 * 24 11 10 44 44 H 1.09000 * 109.53755 * 6.53160 * 25 8 6 45 45 H 1.09006 * 109.67452 * 246.22428 * 25 8 6 46 46 H 1.09007 * 109.46560 * 90.00396 * 27 26 5 47 47 H 1.08996 * 109.47621 * 210.00256 * 27 26 5 48 48 H 1.08997 * 109.47321 * 330.01328 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2848 1.0432 0.0000 4 8 3.4540 0.7360 -0.0005 5 6 3.6121 -0.6011 -0.0015 6 6 4.8870 -1.3431 -0.0028 7 8 4.8852 -2.5546 -0.1051 8 7 6.0540 -0.6780 0.1093 9 6 7.3213 -1.4082 0.2483 10 6 8.0550 -0.8960 1.4917 11 6 8.2154 0.6229 1.3950 12 7 8.9460 1.1121 2.5669 13 6 8.4381 0.9121 3.8229 14 1 7.3818 1.0426 4.0054 15 6 9.2813 0.5416 4.8615 16 7 10.4745 0.0525 4.5979 17 14 8.7227 0.7374 6.6332 18 1 8.0386 -0.5038 7.0765 19 1 9.9024 0.9888 7.4994 20 1 7.7828 1.8829 6.7321 21 6 10.2196 1.8152 2.3951 22 6 9.9513 3.2943 2.1101 23 8 9.3384 3.8960 3.2522 24 6 6.8347 1.2811 1.3436 25 6 6.0871 0.7936 0.0985 26 6 2.3514 -1.1326 -0.0070 27 6 1.9557 -2.5867 -0.0153 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 7.9381 -1.2409 -0.6348 32 1 7.1192 -2.4738 0.3562 33 1 7.4785 -1.1450 2.3826 34 1 9.0381 -1.3630 1.5522 35 1 8.7704 0.8726 0.4909 36 1 11.0635 -0.2067 5.3237 37 1 10.8117 1.7222 3.3057 38 1 10.7665 1.3777 1.5599 39 1 10.8929 3.7994 1.8947 40 1 9.2861 3.3839 1.2512 41 1 9.1390 4.8357 3.1422 42 1 6.2697 1.0116 2.2359 43 1 6.9495 2.3640 1.2983 44 1 5.0685 1.1813 0.1087 45 1 6.6019 1.1425 -0.7968 46 1 1.8581 -2.9425 1.0104 47 1 1.0028 -2.7011 -0.5318 48 1 2.7203 -3.1683 -0.5302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098401221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:25 Heat of formation + Delta-G solvation = -12.784392 kcal Electronic energy + Delta-G solvation = -30830.333688 eV Core-core repulsion = 26696.014103 eV Total energy + Delta-G solvation = -4134.319585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.09055 -41.21022 -39.17253 -37.74274 -36.60768 -36.10610 -34.10801 -33.58976 -32.15706 -31.92303 -29.85918 -29.51397 -29.08679 -26.75058 -25.31100 -24.47806 -23.50811 -22.82724 -22.15078 -21.48377 -20.47102 -18.92482 -18.71023 -18.15293 -18.03083 -17.44319 -17.12674 -16.71662 -16.22962 -16.02503 -15.58844 -15.33075 -14.97656 -14.69963 -14.57923 -14.47314 -14.43548 -14.22499 -14.06001 -13.91157 -13.74094 -13.68248 -13.25361 -13.16387 -13.02851 -12.99155 -12.75411 -12.58187 -12.38211 -12.16980 -12.06483 -11.82690 -11.61144 -11.48719 -11.31583 -11.09938 -10.97083 -10.60488 -10.56177 -10.40152 -9.75316 -8.37963 -7.73609 -5.35446 -0.32804 0.98110 1.41434 1.42229 1.44955 1.53632 1.81030 2.04371 2.55026 3.02417 3.20185 3.37006 3.55782 3.58566 3.79223 3.86051 3.99253 4.13866 4.16022 4.20908 4.38523 4.44148 4.59070 4.60702 4.63713 4.68343 4.69605 4.72278 4.75562 4.80058 4.87681 4.88221 4.93277 4.96920 5.08073 5.10988 5.14328 5.21729 5.30191 5.39341 5.61891 5.63070 5.76050 5.84328 6.13555 6.58856 6.72908 7.06270 7.23433 7.31927 7.98251 8.49036 9.22991 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.003306 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.065528 B = 8467.471681 C = 8542.002650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.017 3.983 3 N -0.370 5.370 4 O 0.103 5.897 5 C -0.106 4.106 6 C 0.601 3.399 7 O -0.543 6.543 8 N -0.591 5.591 9 C 0.124 3.876 10 C -0.122 4.122 11 C 0.173 3.827 12 N -0.583 5.583 13 C -0.223 4.223 14 H 0.037 0.963 15 C -0.028 4.028 16 N -0.919 5.919 17 Si 0.939 3.061 18 H -0.290 1.290 19 H -0.294 1.294 20 H -0.280 1.280 21 C 0.144 3.856 22 C 0.067 3.933 23 O -0.578 6.578 24 C -0.125 4.125 25 C 0.104 3.896 26 C -0.119 4.119 27 C -0.084 4.084 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.033 0.967 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.246 0.754 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.375 0.625 42 H 0.035 0.965 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.084 0.916 47 H 0.105 0.895 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.814 1.175 -14.515 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.141 4.141 3 N -0.078 5.078 4 O 0.037 5.963 5 C -0.171 4.171 6 C 0.387 3.613 7 O -0.422 6.422 8 N -0.322 5.322 9 C 0.002 3.998 10 C -0.162 4.162 11 C 0.066 3.934 12 N -0.303 5.303 13 C -0.354 4.354 14 H 0.054 0.946 15 C -0.225 4.225 16 N -0.564 5.564 17 Si 0.769 3.231 18 H -0.217 1.217 19 H -0.220 1.220 20 H -0.206 1.206 21 C 0.018 3.982 22 C -0.013 4.013 23 O -0.383 6.383 24 C -0.165 4.165 25 C -0.019 4.019 26 C -0.124 4.124 27 C -0.141 4.141 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.221 0.779 42 H 0.054 0.946 43 H 0.093 0.907 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.103 0.897 47 H 0.124 0.876 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.777 1.182 -14.222 20.543 hybrid contribution 0.269 0.028 1.401 1.427 sum -14.507 1.210 -12.822 19.399 Atomic orbital electron populations 1.20423 0.82398 1.05317 1.05120 1.24134 1.00854 0.87117 1.02042 1.73685 0.90183 1.25677 1.18243 1.85035 1.20865 1.21835 1.68519 1.23976 0.97141 0.84206 1.11734 1.16783 0.81408 0.85826 0.77251 1.90778 1.86053 1.13015 1.52345 1.48205 1.06163 1.08453 1.69381 1.21743 0.82750 0.96632 0.98663 1.22122 0.99255 0.98611 0.96190 1.20530 0.91837 0.90977 0.90024 1.43808 1.22316 1.62880 1.01316 1.18686 0.92346 1.37942 0.86454 0.94555 1.25638 0.97529 0.98427 1.00899 1.70060 1.10122 1.45289 1.30957 0.85736 0.77035 0.77473 0.82859 1.21683 1.21991 1.20553 1.20896 0.88660 0.88429 1.00199 1.22917 0.95162 0.95835 0.87387 1.86765 1.83316 1.27734 1.40452 1.22157 0.97287 1.00672 0.96385 1.22401 1.02791 0.77256 0.99432 1.21899 0.89790 0.99882 1.00850 1.20414 1.03592 0.86107 1.03952 0.88049 0.87671 0.89893 0.88515 0.89973 0.94844 0.92298 0.90932 0.94512 0.92675 0.93298 0.93682 0.93819 0.77914 0.94598 0.90690 0.88184 0.87907 0.89717 0.87601 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.39 71.24 0.74 -0.17 16 2 C 0.02 0.38 7.31 43.56 0.32 0.70 16 3 N -0.37 -9.90 12.04 -48.87 -0.59 -10.49 16 4 O 0.10 2.87 7.76 65.81 0.51 3.38 16 5 C -0.11 -2.98 7.00 24.38 0.17 -2.81 16 6 C 0.60 18.68 7.69 86.69 0.67 19.35 16 7 O -0.54 -18.72 14.53 -3.96 -0.06 -18.78 16 8 N -0.59 -17.46 2.98 -821.97 -2.45 -19.91 16 9 C 0.12 3.71 6.40 86.36 0.55 4.26 16 10 C -0.12 -4.62 5.31 30.67 0.16 -4.45 16 11 C 0.17 6.45 2.59 45.02 0.12 6.57 16 12 N -0.58 -27.11 2.29 -677.90 -1.55 -28.66 16 13 C -0.22 -12.06 7.98 84.03 0.67 -11.39 16 14 H 0.04 2.07 6.92 -2.92 -0.02 2.05 16 15 C -0.03 -1.60 4.96 84.86 0.42 -1.18 16 16 N -0.92 -53.75 11.60 21.65 0.25 -53.50 16 17 Si 0.94 46.86 29.59 68.60 2.03 48.89 16 18 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 19 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 20 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 21 C 0.14 6.40 5.54 86.38 0.48 6.88 16 22 C 0.07 2.38 7.39 71.98 0.53 2.91 16 23 O -0.58 -22.78 13.40 -148.98 -2.00 -24.78 16 24 C -0.12 -4.20 5.30 30.67 0.16 -4.04 16 25 C 0.10 2.75 6.36 86.31 0.55 3.30 16 26 C -0.12 -2.83 6.36 -19.45 -0.12 -2.95 16 27 C -0.08 -1.53 9.91 71.23 0.71 -0.82 16 28 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 29 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.08 2.57 7.04 -2.39 -0.02 2.56 16 33 H 0.03 1.50 7.71 -2.39 -0.02 1.48 16 34 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 35 H 0.07 2.36 7.87 -2.39 -0.02 2.34 16 36 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 37 H 0.06 2.95 5.76 -2.38 -0.01 2.94 16 38 H 0.05 1.99 8.04 -2.39 -0.02 1.97 16 39 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.37 10.30 9.12 -74.06 -0.68 9.63 16 42 H 0.04 1.44 7.10 -2.39 -0.02 1.42 16 43 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.10 2.64 3.83 -44.85 -0.17 2.47 16 45 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 46 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.08 1.67 6.64 -2.39 -0.02 1.66 16 Total: -1.00 -71.70 383.91 2.41 -69.29 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.15 Total: 18.43 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 6.12 Total: 16.14 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -4.34 Total: -112.56 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -1.54 Total: -40.18 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -71.70 2.41 -69.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098401221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.502 kcal (2) G-P(sol) polarization free energy of solvation -71.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds