Wall clock time and date at job start Tue Mar 31 2020 21:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.46877 * 2 1 4 4 O 1.33490 * 126.82756 * 269.68503 * 3 2 1 5 5 N 1.20660 * 113.15750 * 180.26381 * 4 3 2 6 6 C 1.30013 * 112.29809 * 0.02562 * 5 4 3 7 7 C 1.37353 * 126.82803 * 90.00471 * 3 2 1 8 8 C 1.47400 * 128.56602 * 359.73698 * 7 3 2 9 9 O 1.21605 * 119.99883 * 35.25647 * 8 7 3 10 10 N 1.34780 * 119.99988 * 215.25681 * 8 7 3 11 11 C 1.46923 * 120.63047 * 185.39068 * 10 8 7 12 12 C 1.52768 * 109.00533 * 233.58543 * 11 10 8 13 13 C 1.53043 * 109.38009 * 305.58475 * 12 11 10 14 14 N 1.46504 * 109.44592 * 181.25885 * 13 12 11 15 15 C 1.36937 * 119.99537 * 299.93863 * 14 13 12 16 16 H 1.08002 * 120.00501 * 331.18991 * 15 14 13 17 17 C 1.38810 * 119.99802 * 151.19671 * 15 14 13 18 18 N 1.31618 * 119.99922 * 332.14048 * 17 15 14 19 19 Si 1.86803 * 120.00061 * 152.13832 * 17 15 14 20 20 H 1.48500 * 109.46877 * 59.99893 * 19 17 15 21 21 H 1.48506 * 109.47200 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47306 * 300.00066 * 19 17 15 23 23 C 1.46497 * 120.00187 * 119.94065 * 14 13 12 24 24 C 1.53002 * 109.47000 * 87.13401 * 23 14 13 25 25 O 1.42894 * 109.46888 * 65.00352 * 24 23 14 26 26 C 1.53038 * 109.53683 * 61.24186 * 13 12 11 27 27 C 1.46922 * 120.62910 * 5.66878 * 10 8 7 28 28 H 1.09003 * 109.46742 * 299.99595 * 1 2 3 29 29 H 1.08997 * 109.47142 * 59.99739 * 1 2 3 30 30 H 1.09003 * 109.47016 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46742 * 240.00404 * 2 1 3 32 32 H 1.08989 * 109.47430 * 120.00256 * 2 1 3 33 33 H 1.08002 * 127.33441 * 180.02562 * 6 5 4 34 34 H 1.09005 * 109.58651 * 353.41533 * 11 10 8 35 35 H 1.08996 * 109.58853 * 113.84538 * 11 10 8 36 36 H 1.09001 * 109.56284 * 185.55377 * 12 11 10 37 37 H 1.08993 * 109.36153 * 65.49430 * 12 11 10 38 38 H 1.08995 * 109.45925 * 301.22089 * 13 12 11 39 39 H 0.97005 * 119.99830 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.46872 * 207.13789 * 23 14 13 41 41 H 1.09006 * 109.46969 * 327.13455 * 23 14 13 42 42 H 1.08998 * 109.46936 * 185.00069 * 24 23 14 43 43 H 1.09000 * 109.47261 * 304.99778 * 24 23 14 44 44 H 0.96707 * 114.00062 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.49248 * 178.68057 * 26 13 12 46 46 H 1.09003 * 109.52243 * 58.60177 * 26 13 12 47 47 H 1.09001 * 109.58630 * 246.15448 * 27 10 8 48 48 H 1.08999 * 109.59120 * 6.43606 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.3046 2.1733 -1.0685 5 7 2.6987 3.2775 -0.7833 6 6 2.7615 3.4622 0.5021 7 6 2.3068 2.1971 1.0994 8 6 2.1781 1.8484 2.5258 9 8 2.4177 0.7161 2.8989 10 7 1.7948 2.7845 3.4165 11 6 1.7752 2.4857 4.8548 12 6 0.3919 2.8157 5.4127 13 6 0.0366 4.2634 5.0662 14 7 -1.2769 4.5908 5.6264 15 6 -2.3817 3.8787 5.2424 16 1 -2.4216 3.4319 4.2599 17 6 -3.4505 3.7314 6.1157 18 7 -3.2468 3.7598 7.4157 19 14 -5.1780 3.4927 5.4460 20 1 -5.2212 2.2626 4.6152 21 1 -6.1331 3.3617 6.5755 22 1 -5.5529 4.6648 4.6147 23 6 -1.4084 5.6799 6.5973 24 6 -1.6098 7.0029 5.8556 25 8 -2.8537 6.9704 5.1531 26 6 -0.0013 4.4312 3.5455 27 6 1.3828 4.1212 2.9669 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.0790 4.3547 1.0209 34 1 1.9880 1.4282 5.0113 35 1 2.5253 3.0908 5.3640 36 1 0.3958 2.6913 6.4956 37 1 -0.3451 2.1447 4.9716 38 1 0.7876 4.9322 5.4867 39 1 -3.9938 3.6571 8.0260 40 1 -2.2667 5.4903 7.2419 41 1 -0.5044 5.7372 7.2037 42 1 -1.6188 7.8237 6.5726 43 1 -0.7954 7.1492 5.1460 44 1 -3.0474 7.7787 4.6587 45 1 -0.2773 5.4566 3.2995 46 1 -0.7348 3.7453 3.1216 47 1 2.1003 4.8624 3.3190 48 1 1.3393 4.1433 1.8780 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098489354.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:01 Heat of formation + Delta-G solvation = 5.509729 kcal Electronic energy + Delta-G solvation = -30964.197258 eV Core-core repulsion = 26830.670965 eV Total energy + Delta-G solvation = -4133.526293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.05336 -39.95759 -37.65167 -36.20301 -34.87777 -34.69396 -33.84791 -32.04167 -30.95375 -30.38362 -30.14885 -27.78376 -25.69205 -24.39654 -24.18126 -23.22423 -22.85707 -21.56877 -20.68831 -19.86720 -18.91462 -17.90141 -17.71948 -16.75241 -16.58074 -16.24727 -15.92052 -15.05769 -14.88948 -14.70259 -14.41166 -14.39728 -13.83282 -13.73378 -13.68495 -13.36510 -13.24438 -12.93905 -12.75872 -12.56069 -12.12568 -12.05586 -11.97581 -11.71666 -11.51188 -11.18285 -11.12052 -10.94957 -10.84506 -10.61829 -10.53639 -10.44219 -10.18094 -9.92396 -9.88057 -9.82617 -9.53959 -9.47417 -9.08903 -8.47929 -8.34034 -6.62838 -5.71931 -3.14796 1.02808 1.66589 2.64356 2.86488 3.21983 3.46585 3.52333 3.59728 4.05772 4.17403 4.50481 4.58356 4.70551 4.95024 4.98303 5.04620 5.13352 5.15969 5.26208 5.40315 5.41615 5.48461 5.52921 5.60884 5.65701 5.66116 5.78113 5.84338 5.91473 6.00610 6.03429 6.04629 6.09149 6.19971 6.34767 6.42751 6.56846 6.66232 6.75073 6.77446 7.05523 7.15276 7.46875 7.71333 7.88418 8.00671 8.17323 8.43450 8.60873 9.23775 9.92479 10.41427 11.30839 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.003547 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.833283 B = 7892.793170 C = 8356.999209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.051 4.051 3 C 0.043 3.957 4 O 0.091 5.909 5 N -0.356 5.356 6 C 0.022 3.978 7 C -0.252 4.252 8 C 0.598 3.402 9 O -0.539 6.539 10 N -0.593 5.593 11 C 0.114 3.886 12 C -0.135 4.135 13 C 0.176 3.824 14 N -0.571 5.571 15 C -0.234 4.234 16 H 0.058 0.942 17 C 0.015 3.985 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.288 1.288 21 H -0.295 1.295 22 H -0.283 1.283 23 C 0.135 3.865 24 C 0.061 3.939 25 O -0.542 6.542 26 C -0.139 4.139 27 C 0.101 3.899 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.201 0.799 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.252 0.748 40 H 0.112 0.888 41 H 0.035 0.965 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.348 0.652 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.368 0.292 -10.892 15.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 C -0.021 4.021 4 O 0.031 5.969 5 N -0.062 5.062 6 C -0.160 4.160 7 C -0.260 4.260 8 C 0.385 3.615 9 O -0.418 6.418 10 N -0.325 5.325 11 C -0.008 4.008 12 C -0.175 4.175 13 C 0.068 3.932 14 N -0.290 5.290 15 C -0.363 4.363 16 H 0.076 0.924 17 C -0.184 4.184 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.214 1.214 21 H -0.221 1.221 22 H -0.209 1.209 23 C 0.008 3.992 24 C -0.019 4.019 25 O -0.342 6.342 26 C -0.179 4.179 27 C -0.022 4.022 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.218 0.782 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.129 0.871 41 H 0.053 0.947 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.191 0.809 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.611 -0.194 -11.317 16.215 hybrid contribution -0.967 0.684 0.227 1.206 sum 10.645 0.490 -11.090 15.380 Atomic orbital electron populations 1.21773 0.92761 1.03237 1.02960 1.20404 0.97174 0.85610 1.05750 1.24830 0.96101 0.96100 0.85062 1.84550 1.61291 1.17720 1.33362 1.73653 1.16389 0.98675 1.17464 1.26429 1.01238 0.98986 0.89362 1.22090 1.13226 0.95079 0.95557 1.16823 0.77097 0.84501 0.83092 1.90765 1.51723 1.19874 1.79440 1.47949 1.64192 1.13016 1.07306 1.21720 0.98918 1.02137 0.78071 1.22261 0.94138 0.99923 1.01209 1.20307 0.88541 0.93164 0.91151 1.43819 1.01886 1.34019 1.49270 1.18704 0.93179 1.28231 0.96173 0.92415 1.24730 0.98928 1.00076 0.94620 1.69997 1.30161 1.52100 1.01176 0.86535 0.85403 0.77785 0.78005 1.21420 1.22096 1.20911 1.21162 1.02049 0.83948 0.92053 1.23059 0.85045 0.99957 0.93836 1.86885 1.39096 1.40396 1.67870 1.22361 0.94292 1.01955 0.99296 1.22089 0.97602 0.82877 0.99649 0.91771 0.92083 0.90798 0.89007 0.86835 0.78206 0.89443 0.91896 0.90777 0.91000 0.93407 0.93829 0.87059 0.94686 0.96376 0.96198 0.80942 0.91310 0.91254 0.91580 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.89 37.16 0.37 -1.07 16 2 C -0.05 -0.50 6.35 -27.88 -0.18 -0.68 16 3 C 0.04 0.51 6.80 -34.63 -0.24 0.28 16 4 O 0.09 1.10 11.06 18.66 0.21 1.31 16 5 N -0.36 -4.49 12.01 31.81 0.38 -4.10 16 6 C 0.02 0.25 10.05 -14.73 -0.15 0.11 16 7 C -0.25 -3.30 5.59 -102.89 -0.57 -3.87 16 8 C 0.60 9.05 7.58 -12.53 -0.09 8.96 16 9 O -0.54 -9.47 15.23 5.27 0.08 -9.39 16 10 N -0.59 -8.56 2.98 -174.31 -0.52 -9.08 16 11 C 0.11 1.71 6.41 -3.93 -0.03 1.68 16 12 C -0.14 -2.46 5.29 -26.83 -0.14 -2.60 16 13 C 0.18 3.25 2.60 -67.89 -0.18 3.08 16 14 N -0.57 -12.99 2.39 -165.61 -0.40 -13.39 16 15 C -0.23 -6.08 7.94 -15.06 -0.12 -6.20 16 16 H 0.06 1.54 6.89 -52.49 -0.36 1.18 16 17 C 0.02 0.42 4.85 -17.43 -0.08 0.33 16 18 N -0.89 -25.15 11.32 55.49 0.63 -24.52 16 19 Si 0.89 22.18 29.64 -169.99 -5.04 17.15 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 23 C 0.13 2.98 5.65 -4.04 -0.02 2.96 16 24 C 0.06 1.16 7.39 37.16 0.27 1.44 16 25 O -0.54 -11.16 13.27 -35.23 -0.47 -11.62 16 26 C -0.14 -2.27 5.30 -26.62 -0.14 -2.41 16 27 C 0.10 1.30 5.58 -3.72 -0.02 1.28 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.11 1.25 6.90 -51.94 -0.36 0.89 16 33 H 0.20 1.72 7.29 -52.49 -0.38 1.34 16 34 H 0.09 1.38 7.00 -51.93 -0.36 1.02 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.07 1.52 7.71 -51.93 -0.40 1.12 16 38 H 0.05 0.82 7.83 -51.93 -0.41 0.41 16 39 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.11 2.91 5.17 -51.93 -0.27 2.65 16 41 H 0.03 0.71 7.98 -51.93 -0.41 0.30 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.35 5.24 9.12 45.56 0.42 5.66 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.07 1.31 7.02 -51.93 -0.36 0.95 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 0.93 4.52 -51.93 -0.23 0.70 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -31.88 383.64 -7.16 -39.04 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.50 Total: 5.55 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.32 Total: 3.26 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.10 Total: -51.09 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.18 Total: -19.70 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.04 Total: 17.15 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.88 -7.16 -39.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098489354.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.553 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds